Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0006011

Physical Location & Seq

Genomic Coordinates Reverse (-)

20012413 .. 20014548

Gene Structure 2136 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG182400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGAACCCGGTTCAGGGAAACGGGGGCATGTATAGTACCCAGATTGGGTACGGCGTGCCATTGATGACCGGCGGCGTGGTGGCGACGGAGGCTCTGGTTCCGTCGTATAATAATTCTGTGATGAACGATTCGATGCTTCCGAAAACGACGCCGTGCGCGGCGGCTATGCAGTCGGACAGTGGGCTCACCTACAACGTCCCGATCAGTACGACTGTCCCAAGAAAGCGCTCCCGGGTCGACTTGATCAACCCGAACCCGAACCTGTTCTCGTACCCGACTGCTCCGACGAGCCATCATTACAAGAACAACAACGACAACAACTCATTCTCGTTCCTCGGCGAGGACATTTCAATGCAAATCCAGCAGCAGCAGTTCGACATCGACCGCCTCATTTCGCAACACATGGAGAAGGTGAGGTTGGAGATTGAAGAAAAGCGAAAGAGGCAAGCGAGGAGGATAATCGAGTCCATAGAAATGGGGGTGATGAAGCGGCTGAGAGCCAAAGAGGTCGAGATCGAGAAAATCGGGAAGATGAATTGGGCTCTGGAAGAGAAGGTGAAGTCACTCTGCATAGAGAATCAAATATGGCGCGACTTGGCCCAGACCAACGAGGCCACCGCTAATGCTCTCCGGACCAACCTCGAACAAGTCCTGGCCCAGGTGAAAGTCGAGCCCAACAACAACCATCACAACCAAAACGACGCCGTGGCGGCGGCGCTGATGGACGACGCGCAGTCGTGCTGCGGGAGCAGCGGCGGAAACGACGAGGTAGGGTGGCGGGCGGTGAAGGGGGAGGAAGGGACAAGCGGGTCGGGTACAGCAAGTGGGAGTAGGTGGTGCAGGAATTGCGGGAAGGAGGAATCGTGTGTGTTGCTGTTGCCGTGTAGGCACCTGTGCTTGTGTACGGTCTGTGGGTCATCCCTCCACACTTGCCCAGTCTGTAAATCCACCAAGAACGCTAGTGTGCATGTTAACATGTCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0006915 GO:0008150 GO:0008152 GO:0008219 GO:0009892 GO:0009987 GO:0010466 GO:0010605 GO:0010941 GO:0010951 GO:0012501 GO:0016567 GO:0019222 GO:0019538 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0032446 GO:0036211 GO:0042981 GO:0043027 GO:0043028 GO:0043066 GO:0043067 GO:0043069 GO:0043086 GO:0043154 GO:0043170 GO:0043281 GO:0043412 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051865 GO:0052547 GO:0052548 GO:0060255 GO:0060548 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0070647 GO:0071704 GO:0080090 GO:0098772 GO:1901564 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

327

Amino Acids

35.98

Weight (kDa)

7.05

Isoelectric Point (pI)

52.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	280 - 317	1.2e-08	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79110 AT1G79110 AT1G79110 AT3G12920
fragaria_vesca	FvH4_3g15670 FvH4_3g15670
malus_domestica	MD01G1028600.v1.1 MD01G1030500.v1.1 MD05G1220500.v1.1 MD10G1202900.v1.1
prunus_persica	Prupe.4G139400_v2.0.a1 Prupe.4G139400_v2.0.a1
pyrus_communis	pycom05g20390 pycom05g20400 pycom10g17350
rosa_chinensis	RchiOBHm_Chr5g0026341
rosa_laevigata	RLG00000032922
rosa_multiflora	Rmu_co8156202.1_g000001 Rmu_sc0005764.1_g000002 Rmu_sc0025146.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053010
rosa_rugosa	Rorug05G0092400.1
rosa_samantha	Rh5AG185600 Rh5BG182400 Rh5CG201800 Rh5DG184200
rosa_wichuraiana	Rw5G016830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	808
AccB1I	GGYRCC	1 cut(s)	888
AccI	GTMKAC	1 cut(s)	237
AccII	CGCG	3 cut(s)	158, 591, 731
AccIII	TCCGGA	1 cut(s)	630
AcyI	GRCGYC	2 cut(s)	149, 702
AfaI	GTAC	6 cut(s)	37, 50, 208, 272, 817, 904
AfeI	AGCGCT	1 cut(s)	227
AfiI	CCNNNNNNNGG	5 cut(s)	13, 14, 45, 340, 658
AflIII	ACRYGT	1 cut(s)	975
AgsI	TTSAA	2 cut(s)	351, 428
AhdI	GACNNNNNGTC	1 cut(s)	733
AjnI	CCWGG	2 cut(s)	651, 657
AjuI	GAANNNNNNNTTGG	2 cut(s)	401, 433
Ama87I	CYCGRG	1 cut(s)	231
Aor13HI	TCCGGA	1 cut(s)	630
Aor51HI	AGCGCT	1 cut(s)	227
AoxI	GGCC	3 cut(s)	597, 612, 654
ApeKI	GCWGC	4 cut(s)	364, 367, 741, 750
Asp700I	GAANNNNTTC	1 cut(s)	263
AspLEI	GCGC	5 cut(s)	158, 228, 591, 718, 733
AspS9I	GGNCC	3 cut(s)	598, 633, 655
AsuC2I	CCSGG	3 cut(s)	8, 232, 233
AsuHPI	GGTGA	6 cut(s)	178, 424, 493, 568, 673, 796
AvaI	CYCGRG	1 cut(s)	231
AvaII	GGWCC	1 cut(s)	633
BanI	GGYRCC	1 cut(s)	888
BanII	GRGCYC	3 cut(s)	186, 544, 675
BbvI	GCAGC	4 cut(s)	376, 379, 728, 762
BccI	CCATC	3 cut(s)	300, 693, 715
BceAI	ACGGC	4 cut(s)	67, 136, 689, 865
BciT130I	CCWGG	2 cut(s)	653, 659
BclI	TGATCA	1 cut(s)	243
BcnI	CCSGG	3 cut(s)	8, 232, 233
BfaI	CTAG	1 cut(s)	960
BfoI	RGCGCY	2 cut(s)	229, 719
BglI	GCCNNNNNGGC	2 cut(s)	710, 886
Bme1390I	CCNGG	5 cut(s)	8, 232, 233, 653, 659
Bme18I	GGWCC	1 cut(s)	633
BmeRI	GACNNNNNGTC	1 cut(s)	733
BmeT110I	CYCGRG	1 cut(s)	231
BmgT120I	GGNCC	3 cut(s)	598, 633, 655
BmiI	GGNNCC	2 cut(s)	99, 890
BmrFI	CCNGG	5 cut(s)	8, 232, 233, 653, 659
BmrI	ACTGGG	1 cut(s)	929
BmsI	GCATC	1 cut(s)	123
BmuI	ACTGGG	1 cut(s)	929
BpuMI	CCSGG	3 cut(s)	8, 232, 233
BsaHI	GRCGYC	2 cut(s)	149, 702
BsaJI	CCNNGG	4 cut(s)	231, 334, 657, 705
BsaWI	WCCGGW	1 cut(s)	630
BsaXI	ACNNNNNCTCC	2 cut(s)	848, 878
Bsc4I	CCNNNNNNNGG	5 cut(s)	13, 14, 45, 340, 658
Bse118I	RCCGGY	1 cut(s)	68
Bse1I	ACTGG	1 cut(s)	935
BseAI	TCCGGA	1 cut(s)	630
BseBI	CCWGG	2 cut(s)	653, 659
BseDI	CCNNGG	4 cut(s)	231, 334, 657, 705
BseGI	GGATG	1 cut(s)	917
BseLI	CCNNNNNNNGG	5 cut(s)	13, 14, 45, 340, 658
BseMII	CTCAG	1 cut(s)	485
BseNI	ACTGG	1 cut(s)	935
BseRI	GAGGAG	1 cut(s)	466
BseXI	GCAGC	4 cut(s)	376, 379, 728, 762
BsgI	GTGCAG	1 cut(s)	859
Bsh1236I	CGCG	3 cut(s)	158, 591, 731
Bsh1285I	CGRYCG	1 cut(s)	385
BshFI	GGCC	3 cut(s)	599, 614, 656
BshNI	GGYRCC	1 cut(s)	888
BsiEI	CGRYCG	1 cut(s)	385
BsiHKCI	CYCGRG	1 cut(s)	231
BsiSI	CCGG	4 cut(s)	8, 69, 232, 631
BslFI	GGGAC	3 cut(s)	182, 200, 814
BslI	CCNNNNNNNGG	5 cut(s)	13, 14, 45, 340, 658
BsmFI	GGGAC	3 cut(s)	182, 200, 814
BsnI	GGCC	3 cut(s)	599, 614, 656
BsoBI	CYCGRG	1 cut(s)	231
Bsp1286I	GDGCHC	3 cut(s)	186, 544, 675
Bsp13I	TCCGGA	1 cut(s)	630
Bsp143I	GATC	3 cut(s)	201, 243, 513
BspANI	GGCC	3 cut(s)	599, 614, 656
BspCNI	CTCAG	1 cut(s)	486
BspEI	TCCGGA	1 cut(s)	630
BspFNI	CGCG	3 cut(s)	158, 591, 731
BspLI	GGNNCC	2 cut(s)	99, 890
BspT107I	GGYRCC	1 cut(s)	888
BsrFI	RCCGGY	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	935
BssAI	RCCGGY	1 cut(s)	68
BssECI	CCNNGG	4 cut(s)	231, 334, 657, 705
BssMI	GATC	3 cut(s)	201, 243, 513
BssNI	GRCGYC	2 cut(s)	149, 702
Bst2UI	CCWGG	2 cut(s)	653, 659
Bst4CI	ACNGT	3 cut(s)	179, 214, 907
Bst6I	CTCTTC	1 cut(s)	543
BstACI	GRCGYC	2 cut(s)	149, 702
BstAPI	GCANNNNNTGC	1 cut(s)	846
BstC8I	GCNNGC	3 cut(s)	56, 447, 780
BstDEI	CTNAG	2 cut(s)	494, 981
BstDSI	CCRYGG	1 cut(s)	705
BstENI	CCTNNNNNAGG	2 cut(s)	338, 656
BstF5I	GGATG	1 cut(s)	917
BstFNI	CGCG	3 cut(s)	158, 591, 731
BstH2I	RGCGCY	2 cut(s)	229, 719
BstHHI	GCGC	5 cut(s)	158, 228, 591, 718, 733
BstKTI	GATC	3 cut(s)	204, 246, 516
BstMBI	GATC	3 cut(s)	201, 243, 513
BstMCI	CGRYCG	1 cut(s)	385
BstMWI	GCNNNNNNNGC	8 cut(s)	89, 361, 442, 710, 747, 750, 846, 886
BstNI	CCWGG	2 cut(s)	653, 659
BstNSI	RCATGY	3 cut(s)	31, 971, 979
BstSCI	CCNGG	5 cut(s)	6, 230, 231, 651, 657
BstUI	CGCG	3 cut(s)	158, 591, 731
BstV1I	GCAGC	4 cut(s)	376, 379, 728, 762
BstXI	CCANNNNNNTGG	1 cut(s)	475
BsuRI	GGCC	3 cut(s)	599, 614, 656
BtgI	CCRYGG	1 cut(s)	705
BtsCI	GGATG	1 cut(s)	917
BtsIMutI	CAGTG	1 cut(s)	184
Cac8I	GCNNGC	3 cut(s)	56, 447, 780
CfoI	GCGC	5 cut(s)	158, 228, 591, 718, 733
Cfr10I	RCCGGY	1 cut(s)	68
Cfr13I	GGNCC	3 cut(s)	598, 633, 655
Cfr9I	CCCGGG	1 cut(s)	231
CseI	GACGC	3 cut(s)	157, 710, 737
Csp6I	GTAC	6 cut(s)	36, 49, 207, 271, 816, 903
CviAII	CATG	4 cut(s)	28, 403, 968, 976
CviQI	GTAC	6 cut(s)	36, 49, 207, 271, 816, 903
DdeI	CTNAG	2 cut(s)	494, 981
DpnI	GATC	3 cut(s)	203, 245, 515
DpnII	GATC	3 cut(s)	201, 243, 513
DrdI	GACNNNNNNGTC	1 cut(s)	808
DriI	GACNNNNNGTC	1 cut(s)	733
DseDI	GACNNNNNNGTC	1 cut(s)	808
Eam1104I	CTCTTC	1 cut(s)	543
Eam1105I	GACNNNNNGTC	1 cut(s)	733
EarI	CTCTTC	1 cut(s)	543
EciI	GGCGGA	1 cut(s)	771
Eco24I	GRGCYC	3 cut(s)	186, 544, 675
Eco47I	GGWCC	1 cut(s)	633
Eco47III	AGCGCT	1 cut(s)	227
Eco88I	CYCGRG	1 cut(s)	231
EcoNI	CCTNNNNNAGG	2 cut(s)	338, 656
EcoRII	CCWGG	2 cut(s)	651, 657
EcoT38I	GRGCYC	3 cut(s)	186, 544, 675
FaeI	CATG	4 cut(s)	31, 406, 971, 979
FaqI	GGGAC	3 cut(s)	182, 200, 814
FatI	CATG	4 cut(s)	27, 402, 967, 975
FauI	CCCGC	4 cut(s)	737, 771, 800, 842
FbaI	TGATCA	1 cut(s)	243
FblI	GTMKAC	1 cut(s)	237
FokI	GGATG	1 cut(s)	904
FriOI	GRGCYC	3 cut(s)	186, 544, 675
FspBI	CTAG	1 cut(s)	960
GlaI	GCGC	5 cut(s)	157, 227, 590, 717, 732
HaeII	RGCGCY	2 cut(s)	229, 719
HaeIII	GGCC	3 cut(s)	599, 614, 656
HapII	CCGG	4 cut(s)	8, 69, 232, 631
HgaI	GACGC	3 cut(s)	157, 710, 737
HhaI	GCGC	5 cut(s)	158, 228, 591, 718, 733
Hin1I	GRCGYC	2 cut(s)	149, 702
Hin1II	CATG	4 cut(s)	31, 406, 971, 979
Hin6I	GCGC	5 cut(s)	156, 226, 589, 716, 731
HinP1I	GCGC	5 cut(s)	156, 226, 589, 716, 731
HincII	GTYRAC	2 cut(s)	238, 973
HindII	GTYRAC	2 cut(s)	238, 973
HinfI	GANTC	4 cut(s)	128, 464, 577, 860
HpaI	GTTAAC	1 cut(s)	973
HpaII	CCGG	4 cut(s)	8, 69, 232, 631
HphI	GGTGA	6 cut(s)	178, 424, 493, 568, 673, 796
Hpy166II	GTNNAC	3 cut(s)	238, 903, 973
Hpy188I	TCNGA	3 cut(s)	141, 175, 285
Hpy188III	TCNNGA	6 cut(s)	199, 511, 517, 526, 545, 631
Hpy8I	GTNNAC	3 cut(s)	238, 903, 973
Hpy99I	CGWCG	7 cut(s)	88, 106, 151, 289, 704, 731, 767
HpyAV	CCTTC	5 cut(s)	403, 547, 781, 791, 847
HpyCH4III	ACNGT	3 cut(s)	179, 214, 907
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	5 cut(s)	169, 355, 570, 840, 967
HpyF10VI	GCNNNNNNNGC	8 cut(s)	89, 361, 442, 710, 747, 750, 846, 886
HpyF3I	CTNAG	2 cut(s)	494, 981
HpySE526I	ACGT	1 cut(s)	195
Hsp92I	GRCGYC	2 cut(s)	149, 702
Hsp92II	CATG	4 cut(s)	31, 406, 971, 979
HspAI	GCGC	5 cut(s)	156, 226, 589, 716, 731
Kpn2I	TCCGGA	1 cut(s)	630
Ksp22I	TGATCA	1 cut(s)	243
KspAI	GTTAAC	1 cut(s)	973
Kzo9I	GATC	3 cut(s)	201, 243, 513
LmnI	GCTCC	3 cut(s)	233, 286, 747
Lsp1109I	GCAGC	4 cut(s)	376, 379, 728, 762
LweI	GCATC	1 cut(s)	123
MaeI	CTAG	1 cut(s)	960
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	1 cut(s)	561
MalI	GATC	3 cut(s)	203, 245, 515
MboI	GATC	3 cut(s)	201, 243, 513
MboII	GAAGA	3 cut(s)	440, 541, 560
MhlI	GDGCHC	3 cut(s)	186, 544, 675
MluCI	AATT	3 cut(s)	112, 535, 844
MlyI	GAGTC	1 cut(s)	473
MmeI	TCCRAC	3 cut(s)	153, 308, 399
MroI	TCCGGA	1 cut(s)	630
MroXI	GAANNNNTTC	1 cut(s)	263
MseI	TTAA	1 cut(s)	972
MslI	CAYNNNNRTG	2 cut(s)	350, 473
MspA1I	CMGCKG	1 cut(s)	753
MspI	CCGG	4 cut(s)	8, 69, 232, 631
MspR9I	CCNGG	5 cut(s)	8, 232, 233, 653, 659
MvaI	CCWGG	2 cut(s)	653, 659
MvnI	CGCG	3 cut(s)	158, 591, 731
MwoI	GCNNNNNNNGC	8 cut(s)	89, 361, 442, 710, 747, 750, 846, 886
NciI	CCSGG	3 cut(s)	8, 232, 233
NdeII	GATC	3 cut(s)	201, 243, 513
NlaIII	CATG	4 cut(s)	31, 406, 971, 979
NlaIV	GGNNCC	2 cut(s)	99, 890
NmeAIII	GCCGAG	1 cut(s)	315
NmuCI	GTSAC	1 cut(s)	561
NspI	RCATGY	3 cut(s)	31, 971, 979
PciI	ACATGT	1 cut(s)	975
PcsI	WCGNNNNNNNCGW	1 cut(s)	137
PdmI	GAANNNNTTC	1 cut(s)	263
PfeI	GAWTC	3 cut(s)	128, 577, 860
PleI	GAGTC	1 cut(s)	472
PpsI	GAGTC	1 cut(s)	472
PscI	ACATGT	1 cut(s)	975
Psp6I	CCWGG	2 cut(s)	651, 657
PspGI	CCWGG	2 cut(s)	651, 657
PspN4I	GGNNCC	2 cut(s)	99, 890
PspPI	GGNCC	3 cut(s)	598, 633, 655
RsaI	GTAC	6 cut(s)	37, 50, 208, 272, 817, 904
RsaNI	GTAC	6 cut(s)	36, 49, 207, 271, 816, 903
RseI	CAYNNNNRTG	2 cut(s)	350, 473
SalI	GTCGAC	1 cut(s)	236
SaqAI	TTAA	1 cut(s)	972
Sau3AI	GATC	3 cut(s)	201, 243, 513
Sau96I	GGNCC	3 cut(s)	598, 633, 655
SchI	GAGTC	1 cut(s)	473
ScrFI	CCNGG	5 cut(s)	8, 232, 233, 653, 659
SduI	GDGCHC	3 cut(s)	186, 544, 675
SfaNI	GCATC	1 cut(s)	123
SinI	GGWCC	1 cut(s)	633
SmaI	CCCGGG	1 cut(s)	233
SmiMI	CAYNNNNRTG	2 cut(s)	350, 473
Sse9I	AATT	3 cut(s)	112, 535, 844
SspMI	CTAG	1 cut(s)	960
StyD4I	CCNGG	5 cut(s)	6, 230, 231, 651, 657
TaaI	ACNGT	3 cut(s)	179, 214, 907
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	9 cut(s)	131, 237, 375, 381, 462, 510, 516, 642, 669
TasI	AATT	3 cut(s)	112, 535, 844
TauI	GCSGC	7 cut(s)	75, 161, 164, 493, 713, 716, 756
TfiI	GAWTC	3 cut(s)	128, 577, 860
Tru1I	TTAA	1 cut(s)	972
Tru9I	TTAA	1 cut(s)	972
TscAI	CASTG	1 cut(s)	184
TseFI	GTSAC	1 cut(s)	561
TseI	GCWGC	4 cut(s)	364, 367, 741, 750
Tsp45I	GTSAC	1 cut(s)	561
TspDTI	ATGAA	4 cut(s)	17, 137, 500, 548
TspGWI	ACGGA	2 cut(s)	90, 101
TspMI	CCCGGG	1 cut(s)	231
TspRI	CASTG	1 cut(s)	184
VpaK11BI	GGWCC	1 cut(s)	633
XagI	CCTNNNNNAGG	2 cut(s)	338, 656
XceI	RCATGY	3 cut(s)	31, 971, 979
XmaI	CCCGGG	1 cut(s)	231
XmiI	GTMKAC	1 cut(s)	237
XmnI	GAANNNNTTC	1 cut(s)	263
XspI	CTAG	1 cut(s)	960

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.