Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0006011

Physical Location & Seq

Genomic Coordinates Forward (+)

10819230 .. 10819784

Gene Structure 555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1030500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGTCCCTCGTGAGGAAAACTTTATCCCTTTGTTCTTCGTACCCGACTCCGCCGTTAACCAACTACAAAAACTACGGCCCTTTCTCTTTTCTCGGCGAAGACATCTCTCTGCACGTGCAGCAGCAACAGTTCGACGTCGACCATCTCATTTCCCAACACATGGAGAATGTGAGATTGGAAGTCGAAGAAAAGAGGAAGCGGCATGCGCGGTGGATAATGGAGGCGATTGAGGTCGGGATGGCGAAGCGGCTGAGGGATAAAAAGGAAGAGATTGAAAAAATAAGGAAGCTGAATTGGGCGCTGGTCAAGTCATTGTGCGTAGAAAACCAAGTATGGCATAACCTGGCTCAGACTAACGAAGCCACCACCAATGCCCTCCGCATCAACCTCGAGCAGGTCCTGGCTCACCAGGCCAAGGATGACGACAGCCGGCAGAGCGACGCCAACGCCGTCGTACTAATGGACGACGCCCAGTCATGCTGCGGAAGCAGCGGCAGGGACGAAGGTCGAAACGACGGAGTTGGGGAGTTAGACAGGAGGCGCACTGTCTACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0004857 GO:0004866 GO:0004869 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0006915 GO:0008150 GO:0008152 GO:0008219 GO:0009892 GO:0009987 GO:0010466 GO:0010605 GO:0010941 GO:0010951 GO:0012501 GO:0016567 GO:0019222 GO:0019538 GO:0030162 GO:0030234 GO:0030414 GO:0031323 GO:0031324 GO:0032268 GO:0032269 GO:0032446 GO:0036211 GO:0042981 GO:0043027 GO:0043028 GO:0043066 GO:0043067 GO:0043069 GO:0043086 GO:0043154 GO:0043170 GO:0043281 GO:0043412 GO:0044092 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045861 GO:0048519 GO:0048523 GO:0050789 GO:0050790 GO:0050794 GO:0051171 GO:0051172 GO:0051246 GO:0051248 GO:0051336 GO:0051346 GO:0051865 GO:0052547 GO:0052548 GO:0060255 GO:0060548 GO:0061134 GO:0061135 GO:0065007 GO:0065009 GO:0070647 GO:0071704 GO:0080090 GO:0098772 GO:1901564 GO:2000116 GO:2000117

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

185

Amino Acids

21.17

Weight (kDa)

6.31

Isoelectric Point (pI)

53.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006011)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79110 AT1G79110 AT1G79110 AT3G12920
fragaria_vesca	FvH4_3g15670 FvH4_3g15670
malus_domestica	MD01G1028600.v1.1 MD01G1030500.v1.1 MD05G1220500.v1.1 MD10G1202900.v1.1
prunus_persica	Prupe.4G139400_v2.0.a1 Prupe.4G139400_v2.0.a1
pyrus_communis	pycom05g20390 pycom05g20400 pycom10g17350
rosa_chinensis	RchiOBHm_Chr5g0026341
rosa_laevigata	RLG00000032922
rosa_multiflora	Rmu_co8156202.1_g000001 Rmu_sc0005764.1_g000002 Rmu_sc0025146.1_g000001
rosa_roxburghii	Rroxscaffold_1G00053010
rosa_rugosa	Rorug05G0092400.1
rosa_samantha	Rh5AG185600 Rh5BG182400 Rh5CG201800 Rh5DG184200
rosa_wichuraiana	Rw5G016830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	138
Acc36I	ACCTGC	1 cut(s)	385
AccB7I	CCANNNNNTGG	1 cut(s)	160
AccI	GTMKAC	2 cut(s)	138, 549
AccII	CGCG	1 cut(s)	208
AciI	CCGC	7 cut(s)	50, 199, 208, 247, 379, 483, 492
AcvI	CACGTG	1 cut(s)	115
AcyI	GRCGYC	3 cut(s)	135, 441, 468
AfaI	GTAC	2 cut(s)	41, 456
AfiI	CCNNNNNNNGG	4 cut(s)	12, 160, 394, 415
AgsI	TTSAA	1 cut(s)	275
AhdI	GACNNNNNGTC	1 cut(s)	472
AjnI	CCWGG	3 cut(s)	342, 399, 408
AjuI	GAANNNNNNNTTGG	2 cut(s)	158, 190
AluBI	AGCT	1 cut(s)	289
AluI	AGCT	1 cut(s)	289
AlwNI	CAGNNNCTG	1 cut(s)	400
Ama87I	CYCGRG	1 cut(s)	389
AoxI	GGCC	2 cut(s)	76, 411
ApeKI	GCWGC	4 cut(s)	118, 121, 480, 489
AspLEI	GCGC	3 cut(s)	208, 301, 543
AspS9I	GGNCC	2 cut(s)	77, 397
AsuHPI	GGTGA	1 cut(s)	398
AvaI	CYCGRG	1 cut(s)	389
AvaII	GGWCC	1 cut(s)	397
BauI	CACGAG	1 cut(s)	8
BbrPI	CACGTG	1 cut(s)	115
BbsI	GAAGAC	1 cut(s)	105
BbvCI	CCTCAGC	1 cut(s)	251
BbvI	GCAGC	4 cut(s)	130, 133, 467, 501
BccI	CCATC	2 cut(s)	150, 232
BceAI	ACGGC	3 cut(s)	37, 91, 434
BcgI	CGANNNNNNTGC	2 cut(s)	370, 404
BciT130I	CCWGG	3 cut(s)	344, 401, 410
BfaI	CTAG	1 cut(s)	553
BfoI	RGCGCY	1 cut(s)	302
BfuAI	ACCTGC	1 cut(s)	385
BisI	GCNGC	7 cut(s)	119, 122, 200, 248, 481, 490, 493
BlsI	GCNGC	7 cut(s)	120, 123, 201, 249, 482, 491, 494
Bme1390I	CCNGG	3 cut(s)	344, 401, 410
Bme18I	GGWCC	1 cut(s)	397
BmeRI	GACNNNNNGTC	1 cut(s)	472
BmeT110I	CYCGRG	1 cut(s)	389
BmgT120I	GGNCC	2 cut(s)	77, 397
BmrFI	CCNGG	3 cut(s)	344, 401, 410
BmrI	ACTGGG	1 cut(s)	466
BmsI	GCATC	1 cut(s)	390
BmuI	ACTGGG	1 cut(s)	466
BoxI	GACNNNNGTC	1 cut(s)	504
BpiI	GAAGAC	1 cut(s)	105
Bpu10I	CCTNAGC	1 cut(s)	251
BsaAI	YACGTR	1 cut(s)	115
BsaHI	GRCGYC	3 cut(s)	135, 441, 468
BsaJI	CCNNGG	1 cut(s)	414
Bsc4I	CCNNNNNNNGG	4 cut(s)	12, 160, 394, 415
Bse118I	RCCGGY	1 cut(s)	429
Bse1I	ACTGG	1 cut(s)	472
BseBI	CCWGG	3 cut(s)	344, 401, 410
BseDI	CCNNGG	1 cut(s)	414
BseGI	GGATG	2 cut(s)	243, 424
BseLI	CCNNNNNNNGG	4 cut(s)	12, 160, 394, 415
BseMII	CTCAG	2 cut(s)	242, 362
BseNI	ACTGG	1 cut(s)	472
BseXI	GCAGC	4 cut(s)	130, 133, 467, 501
BsgI	GTGCAG	2 cut(s)	95, 137
Bsh1236I	CGCG	1 cut(s)	208
BshFI	GGCC	2 cut(s)	78, 413
BsiHKCI	CYCGRG	1 cut(s)	389
BsiSI	CCGG	1 cut(s)	430
BslFI	GGGAC	1 cut(s)	512
BslI	CCNNNNNNNGG	4 cut(s)	12, 160, 394, 415
BsmFI	GGGAC	1 cut(s)	512
BsnI	GGCC	2 cut(s)	78, 413
BsoBI	CYCGRG	1 cut(s)	389
BspACI	CCGC	7 cut(s)	50, 199, 208, 247, 379, 483, 492
BspANI	GGCC	2 cut(s)	78, 413
BspCNI	CTCAG	2 cut(s)	243, 361
BspFNI	CGCG	1 cut(s)	208
BspMI	ACCTGC	1 cut(s)	385
BsrFI	RCCGGY	1 cut(s)	429
BsrI	ACTGG	1 cut(s)	472
BssAI	RCCGGY	1 cut(s)	429
BssECI	CCNNGG	1 cut(s)	414
BssNI	GRCGYC	3 cut(s)	135, 441, 468
BssSI	CACGAG	1 cut(s)	8
BssT1I	CCWWGG	1 cut(s)	414
Bst2BI	CACGAG	1 cut(s)	8
Bst2UI	CCWGG	3 cut(s)	344, 401, 410
Bst4CI	ACNGT	2 cut(s)	129, 547
Bst6I	CTCTTC	1 cut(s)	261
BstACI	GRCGYC	3 cut(s)	135, 441, 468
BstBAI	YACGTR	1 cut(s)	115
BstC8I	GCNNGC	2 cut(s)	204, 431
BstDEI	CTNAG	2 cut(s)	251, 348
BstENI	CCTNNNNNAGG	1 cut(s)	392
BstF5I	GGATG	2 cut(s)	243, 424
BstFNI	CGCG	1 cut(s)	208
BstH2I	RGCGCY	1 cut(s)	302
BstHHI	GCGC	3 cut(s)	208, 301, 543
BstMWI	GCNNNNNNNGC	6 cut(s)	118, 205, 410, 435, 486, 489
BstNI	CCWGG	3 cut(s)	344, 401, 410
BstNSI	RCATGY	1 cut(s)	206
BstPAI	GACNNNNGTC	1 cut(s)	504
BstSCI	CCNGG	3 cut(s)	342, 399, 408
BstUI	CGCG	1 cut(s)	208
BstV1I	GCAGC	4 cut(s)	130, 133, 467, 501
BstV2I	GAAGAC	1 cut(s)	105
BsuRI	GGCC	2 cut(s)	78, 413
BtsCI	GGATG	2 cut(s)	243, 424
BtsIMutI	CAGTG	1 cut(s)	543
BveI	ACCTGC	1 cut(s)	385
Cac8I	GCNNGC	2 cut(s)	204, 431
CaiI	CAGNNNCTG	1 cut(s)	400
CfoI	GCGC	3 cut(s)	208, 301, 543
Cfr10I	RCCGGY	1 cut(s)	429
Cfr13I	GGNCC	2 cut(s)	77, 397
CseI	GACGC	2 cut(s)	449, 476
Csp6I	GTAC	2 cut(s)	40, 455
CviAII	CATG	3 cut(s)	160, 203, 477
CviJI	RGCY	8 cut(s)	78, 250, 289, 347, 362, 404, 413, 429
CviKI_1	RGCY	8 cut(s)	78, 250, 289, 347, 362, 404, 413, 429
CviQI	GTAC	2 cut(s)	40, 455
DdeI	CTNAG	2 cut(s)	251, 348
DriI	GACNNNNNGTC	1 cut(s)	472
Eam1104I	CTCTTC	1 cut(s)	261
Eam1105I	GACNNNNNGTC	1 cut(s)	472
EarI	CTCTTC	1 cut(s)	261
EciI	GGCGGA	1 cut(s)	39
Eco130I	CCWWGG	1 cut(s)	414
Eco47I	GGWCC	1 cut(s)	397
Eco72I	CACGTG	1 cut(s)	115
Eco88I	CYCGRG	1 cut(s)	389
EcoNI	CCTNNNNNAGG	1 cut(s)	392
EcoO109I	RGGNCCY	1 cut(s)	397
EcoRII	CCWGG	3 cut(s)	342, 399, 408
EcoT14I	CCWWGG	1 cut(s)	414
ErhI	CCWWGG	1 cut(s)	414
FaeI	CATG	3 cut(s)	163, 206, 480
FaiI	YATR	5 cut(s)	161, 204, 334, 339, 478
FaqI	GGGAC	1 cut(s)	512
FatI	CATG	3 cut(s)	159, 202, 476
FblI	GTMKAC	2 cut(s)	138, 549
Fnu4HI	GCNGC	7 cut(s)	119, 122, 200, 248, 481, 490, 493
FokI	GGATG	2 cut(s)	250, 431
Fsp4HI	GCNGC	7 cut(s)	119, 122, 200, 248, 481, 490, 493
FspBI	CTAG	1 cut(s)	553
GlaI	GCGC	3 cut(s)	207, 300, 542
GluI	GCNGC	7 cut(s)	119, 122, 200, 248, 481, 490, 493
HaeII	RGCGCY	1 cut(s)	302
HaeIII	GGCC	2 cut(s)	78, 413
HapII	CCGG	1 cut(s)	430
HgaI	GACGC	2 cut(s)	449, 476
HhaI	GCGC	3 cut(s)	208, 301, 543
Hin1I	GRCGYC	3 cut(s)	135, 441, 468
Hin1II	CATG	3 cut(s)	163, 206, 480
Hin6I	GCGC	3 cut(s)	206, 299, 541
HinP1I	GCGC	3 cut(s)	206, 299, 541
HincII	GTYRAC	2 cut(s)	57, 139
HindII	GTYRAC	2 cut(s)	57, 139
HinfI	GANTC	1 cut(s)	46
HpaI	GTTAAC	1 cut(s)	57
HpaII	CCGG	1 cut(s)	430
HphI	GGTGA	1 cut(s)	398
Hpy166II	GTNNAC	3 cut(s)	57, 139, 550
Hpy188I	TCNGA	1 cut(s)	351
Hpy188III	TCNNGA	2 cut(s)	10, 235
Hpy8I	GTNNAC	3 cut(s)	57, 139, 550
Hpy99I	CGWCG	6 cut(s)	137, 140, 443, 455, 470, 518
HpyAV	CCTTC	1 cut(s)	497
HpyCH4III	ACNGT	2 cut(s)	129, 547
HpyCH4IV	ACGT	2 cut(s)	114, 135
HpyCH4V	TGCA	2 cut(s)	112, 118
HpyF10VI	GCNNNNNNNGC	6 cut(s)	118, 205, 410, 435, 486, 489
HpyF3I	CTNAG	2 cut(s)	251, 348
HpySE526I	ACGT	2 cut(s)	114, 135
Hsp92I	GRCGYC	3 cut(s)	135, 441, 468
Hsp92II	CATG	3 cut(s)	163, 206, 480
HspAI	GCGC	3 cut(s)	206, 299, 541
KroI	GCCGGC	1 cut(s)	429
KroNI	GCCGGC	1 cut(s)	431
KspAI	GTTAAC	1 cut(s)	57
Lsp1109I	GCAGC	4 cut(s)	130, 133, 467, 501
LweI	GCATC	1 cut(s)	390
MaeI	CTAG	1 cut(s)	553
MaeII	ACGT	2 cut(s)	114, 135
MboII	GAAGA	4 cut(s)	27, 110, 197, 278
MluCI	AATT	1 cut(s)	292
MlyI	GAGTC	1 cut(s)	40
MnlI	CCTC	9 cut(s)	6, 17, 186, 214, 223, 246, 386, 398, 531
MroNI	GCCGGC	1 cut(s)	429
MseI	TTAA	1 cut(s)	56
MspA1I	CMGCKG	1 cut(s)	492
MspI	CCGG	1 cut(s)	430
MspR9I	CCNGG	3 cut(s)	344, 401, 410
MvaI	CCWGG	3 cut(s)	344, 401, 410
MvnI	CGCG	1 cut(s)	208
MwoI	GCNNNNNNNGC	6 cut(s)	118, 205, 410, 435, 486, 489
NaeI	GCCGGC	1 cut(s)	431
NgoMIV	GCCGGC	1 cut(s)	429
NlaIII	CATG	3 cut(s)	163, 206, 480
NmeAIII	GCCGAG	1 cut(s)	72
NspI	RCATGY	1 cut(s)	206
PaeI	GCATGC	1 cut(s)	206
PaeR7I	CTCGAG	1 cut(s)	389
PcsI	WCGNNNNNNNCGW	1 cut(s)	447
PdiI	GCCGGC	1 cut(s)	431
PflMI	CCANNNNNTGG	1 cut(s)	160
PkrI	GCNGC	7 cut(s)	120, 123, 201, 249, 482, 491, 494
PleI	GAGTC	1 cut(s)	40
PmaCI	CACGTG	1 cut(s)	115
PmlI	CACGTG	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	40
Ppu21I	YACGTR	1 cut(s)	115
PpuMI	RGGWCCY	1 cut(s)	397
PshAI	GACNNNNGTC	1 cut(s)	504
Psp5II	RGGWCCY	1 cut(s)	397
Psp6I	CCWGG	3 cut(s)	342, 399, 408
PspCI	CACGTG	1 cut(s)	115
PspGI	CCWGG	3 cut(s)	342, 399, 408
PspPI	GGNCC	2 cut(s)	77, 397
PspPPI	RGGWCCY	1 cut(s)	397
PspXI	VCTCGAGB	1 cut(s)	389
PstNI	CAGNNNCTG	1 cut(s)	400
RsaI	GTAC	2 cut(s)	41, 456
RsaNI	GTAC	2 cut(s)	40, 455
SalI	GTCGAC	1 cut(s)	137
SaqAI	TTAA	1 cut(s)	56
SatI	GCNGC	7 cut(s)	119, 122, 200, 248, 481, 490, 493
Sau96I	GGNCC	2 cut(s)	77, 397
SchI	GAGTC	1 cut(s)	40
ScrFI	CCNGG	3 cut(s)	344, 401, 410
SetI	ASST	8 cut(s)	117, 138, 234, 291, 345, 390, 399, 508
SfaNI	GCATC	1 cut(s)	390
Sfr274I	CTCGAG	1 cut(s)	389
SinI	GGWCC	1 cut(s)	397
SlaI	CTCGAG	1 cut(s)	389
SmlI	CTYRAG	1 cut(s)	389
SmoI	CTYRAG	1 cut(s)	389
SphI	GCATGC	1 cut(s)	206
Sse9I	AATT	1 cut(s)	292
SsiI	CCGC	7 cut(s)	50, 199, 208, 247, 379, 483, 492
SspMI	CTAG	1 cut(s)	553
StyD4I	CCNGG	3 cut(s)	342, 399, 408
StyI	CCWWGG	1 cut(s)	414
TaaI	ACNGT	2 cut(s)	129, 547
TaiI	ACGT	2 cut(s)	117, 138
TaqI	TCGA	5 cut(s)	132, 138, 183, 390, 508
TasI	AATT	1 cut(s)	292
TauI	GCSGC	3 cut(s)	202, 250, 495
Tru1I	TTAA	1 cut(s)	56
Tru9I	TTAA	1 cut(s)	56
TscAI	CASTG	1 cut(s)	550
TseI	GCWGC	4 cut(s)	118, 121, 480, 489
TspGWI	ACGGA	1 cut(s)	531
TspRI	CASTG	1 cut(s)	550
Van91I	CCANNNNNTGG	1 cut(s)	160
VpaK11BI	GGWCC	1 cut(s)	397
XagI	CCTNNNNNAGG	1 cut(s)	392
XceI	RCATGY	1 cut(s)	206
XhoI	CTCGAG	1 cut(s)	389
XmiI	GTMKAC	2 cut(s)	138, 549
XspI	CTAG	1 cut(s)	553
ZraI	GACGTC	1 cut(s)	136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.