Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002339

Physical Location & Seq

Genomic Coordinates Forward (+)

30158923 .. 30161829

Gene Structure 2907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G80190.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGTACGGGAGAAAAGGGTATCAGCTTATCAAAGATTTTGCCACCGGAGAGAAGGGTCAGCTCAAACCTTTCAACAGCAAACTCTTTGATGAAACAATCGAAGAGTGTGACCAGAATCACCATCTTATCCAGTCCTTGATAAGGAAAATGCAACAAGAAGGTTTGGATGTTCAGAACAACAGAAACGCTGACCACTATGGAGCACTAATTCACCACCTTGCTTTGATCCGGAACAAGCGCTGCCTCATGGCTTATGTGTACAACCGAGCAGAAATTGTGCGTGATTTGGCATGGAGAGTAGGGCTTGAACTTCTCGACCTTCCCTCTGAAATCCAAGAGAAGCTCACTACACTAGAGAAGGAATACTTCAAAAACCATTCGGTTGCTCTAAAATCATACATGGGAAAAGTAGGAATCGAGTTGAATGTCGATATGGTCCCTCCTAAAGATCCTTATATCAAGGTCAGAATTTTGGATGATATTGATGAAGGAATCGTGCTGAGTGACAAAACAACAAATTTTGCCCGTCATTCTATGCATTTCCTCAAACGTACTGATGCGGAACCATACATTGCTCGGGGCCAAATGGAGGAGCTGACAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sld5

Protein Analysis

201

Amino Acids

23.32

Weight (kDa)

6.45

Isoelectric Point (pI)

38.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sld5	PF05916	46 - 137	7.3e-13	GINS complex protein helical bundle domain
PSF1_C	PF24997	149 - 200	3.5e-28	PSF1 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80190 AT1G80190 AT1G80190 AT1G80190 AT1G80190 AT1G80190
fragaria_vesca	FvH4_1g25440 FvH4_1g25440 FvH4_1g25440 FvH4_1g25440 FvH4_1g25440 FvH4_6g30230
malus_domestica	MD17G1206800.v1.1
prunus_persica	Prupe.3G081400_v2.0.a1 Prupe.3G081400_v2.0.a1 Prupe.3G081400_v2.0.a1 Prupe.3G081400_v2.0.a1 Prupe.3G081400_v2.0.a1
pyrus_communis	pycom17g20960
rosa_chinensis	RchiOBHm_Chr2g0123461 RchiOBHm_Chr2g0136471
rosa_laevigata	RLG00000018757 RLG00000019534
rosa_multiflora	Rmu_co8456461.1_g000001 Rmu_sc0001998.1_g000001 Rmu_sc0005876.1_g000002 Rmu_sc0038680.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108260 Rroxscaffold_2G00120610
rosa_rugosa	Rorug02G0246000 Rorug02G0330800 Rorug02G0330900
rosa_samantha	Rh2AG304600 Rh2AG381800 Rh2BG312700 Rh2BG388500 Rh2CG291100 Rh2CG368200 Rh2DG328600 Rh2DG405000
rosa_wichuraiana	Rw2G024410 Rw2G031210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	228
AciI	CCGC	1 cut(s)	560
AclWI	GGATC	2 cut(s)	220, 443
AcsI	RAATTY	2 cut(s)	468, 517
AfaI	GTAC	3 cut(s)	5, 260, 553
AfeI	AGCGCT	1 cut(s)	239
AfiI	CCNNNNNNNGG	2 cut(s)	141, 589
AgsI	TTSAA	4 cut(s)	73, 308, 370, 424
AluBI	AGCT	4 cut(s)	25, 61, 343, 595
AluI	AGCT	4 cut(s)	25, 61, 343, 595
Alw21I	GWGCWC	1 cut(s)	205
AlwI	GGATC	2 cut(s)	220, 443
Ama87I	CYCGRG	1 cut(s)	576
Aor13HI	TCCGGA	1 cut(s)	228
Aor51HI	AGCGCT	1 cut(s)	239
AoxI	GGCC	1 cut(s)	580
ApeKI	GCWGC	1 cut(s)	240
ApoI	RAATTY	2 cut(s)	468, 517
AspLEI	GCGC	1 cut(s)	240
AspS9I	GGNCC	2 cut(s)	436, 580
AsuHPI	GGTGA	2 cut(s)	110, 203
AvaI	CYCGRG	1 cut(s)	576
AvaII	GGWCC	1 cut(s)	436
Bbv12I	GWGCWC	1 cut(s)	205
BbvI	GCAGC	1 cut(s)	227
BccI	CCATC	1 cut(s)	129
BfaI	CTAG	1 cut(s)	353
BfoI	RGCGCY	1 cut(s)	241
BisI	GCNGC	1 cut(s)	241
BlsI	GCNGC	1 cut(s)	242
Bme18I	GGWCC	1 cut(s)	436
BmeT110I	CYCGRG	1 cut(s)	576
BmgT120I	GGNCC	2 cut(s)	436, 580
BmiI	GGNNCC	3 cut(s)	438, 564, 581
BmsI	GCATC	1 cut(s)	547
BsaWI	WCCGGW	2 cut(s)	44, 228
Bsc4I	CCNNNNNNNGG	2 cut(s)	141, 589
Bse1I	ACTGG	1 cut(s)	130
Bse3DI	GCAATG	1 cut(s)	570
BseAI	TCCGGA	1 cut(s)	228
BseGI	GGATG	2 cut(s)	172, 481
BseLI	CCNNNNNNNGG	2 cut(s)	141, 589
BseMI	GCAATG	1 cut(s)	570
BseMII	CTCAG	1 cut(s)	491
BseNI	ACTGG	1 cut(s)	130
BseRI	GAGGAG	1 cut(s)	605
BseXI	GCAGC	1 cut(s)	227
BshFI	GGCC	1 cut(s)	582
BsiHKAI	GWGCWC	1 cut(s)	205
BsiHKCI	CYCGRG	1 cut(s)	576
BsiSI	CCGG	2 cut(s)	45, 229
BslFI	GGGAC	1 cut(s)	422
BslI	CCNNNNNNNGG	2 cut(s)	141, 589
BsmFI	GGGAC	1 cut(s)	422
BsnI	GGCC	1 cut(s)	582
BsoBI	CYCGRG	1 cut(s)	576
Bsp1286I	GDGCHC	1 cut(s)	205
Bsp13I	TCCGGA	1 cut(s)	228
Bsp1407I	TGTACA	1 cut(s)	258
Bsp143I	GATC	2 cut(s)	225, 448
BspACI	CCGC	1 cut(s)	560
BspANI	GGCC	1 cut(s)	582
BspCNI	CTCAG	1 cut(s)	492
BspEI	TCCGGA	1 cut(s)	228
BspLI	GGNNCC	3 cut(s)	438, 564, 581
BspPI	GGATC	2 cut(s)	220, 443
BsrDI	GCAATG	1 cut(s)	570
BsrGI	TGTACA	1 cut(s)	258
BsrI	ACTGG	1 cut(s)	130
BssMI	GATC	2 cut(s)	225, 448
Bst6I	CTCTTC	1 cut(s)	96
BstAUI	TGTACA	1 cut(s)	258
BstDEI	CTNAG	1 cut(s)	500
BstENI	CCTNNNNNAGG	1 cut(s)	139
BstF5I	GGATG	2 cut(s)	172, 481
BstH2I	RGCGCY	1 cut(s)	241
BstHHI	GCGC	1 cut(s)	240
BstKTI	GATC	2 cut(s)	228, 451
BstMBI	GATC	2 cut(s)	225, 448
BstV1I	GCAGC	1 cut(s)	227
BstX2I	RGATCY	1 cut(s)	448
BstYI	RGATCY	1 cut(s)	448
BsuRI	GGCC	1 cut(s)	582
BtsCI	GGATG	2 cut(s)	172, 481
CfoI	GCGC	1 cut(s)	240
Cfr13I	GGNCC	2 cut(s)	436, 580
Csp6I	GTAC	3 cut(s)	4, 259, 552
CviAII	CATG	3 cut(s)	247, 291, 400
CviJI	RGCY	7 cut(s)	25, 61, 251, 304, 343, 582, 595
CviKI_1	RGCY	7 cut(s)	25, 61, 251, 304, 343, 582, 595
CviQI	GTAC	3 cut(s)	4, 259, 552
DdeI	CTNAG	1 cut(s)	500
DpnI	GATC	2 cut(s)	227, 450
DpnII	GATC	2 cut(s)	225, 448
Eam1104I	CTCTTC	1 cut(s)	96
EarI	CTCTTC	1 cut(s)	96
Eco47I	GGWCC	1 cut(s)	436
Eco47III	AGCGCT	1 cut(s)	239
Eco88I	CYCGRG	1 cut(s)	576
EcoNI	CCTNNNNNAGG	1 cut(s)	139
EcoT22I	ATGCAT	1 cut(s)	540
FaeI	CATG	3 cut(s)	250, 294, 403
FalI	AAGNNNNNCTT	2 cut(s)	350, 382
FaqI	GGGAC	1 cut(s)	422
FatI	CATG	3 cut(s)	246, 290, 399
Fnu4HI	GCNGC	1 cut(s)	241
FokI	GGATG	2 cut(s)	179, 488
Fsp4HI	GCNGC	1 cut(s)	241
FspBI	CTAG	1 cut(s)	353
GlaI	GCGC	1 cut(s)	239
GluI	GCNGC	1 cut(s)	241
HaeII	RGCGCY	1 cut(s)	241
HaeIII	GGCC	1 cut(s)	582
HapII	CCGG	2 cut(s)	45, 229
HhaI	GCGC	1 cut(s)	240
Hin1II	CATG	3 cut(s)	250, 294, 403
Hin6I	GCGC	1 cut(s)	238
HinP1I	GCGC	1 cut(s)	238
HinfI	GANTC	3 cut(s)	115, 414, 492
HpaII	CCGG	2 cut(s)	45, 229
HphI	GGTGA	2 cut(s)	110, 203
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	3 cut(s)	174, 328, 467
Hpy188III	TCNNGA	2 cut(s)	229, 314
Hpy8I	GTNNAC	1 cut(s)	259
HpyAV	CCTTC	5 cut(s)	46, 152, 329, 352, 482
HpyCH4IV	ACGT	1 cut(s)	550
HpyCH4V	TGCA	2 cut(s)	151, 538
HpyF3I	CTNAG	1 cut(s)	500
HpySE526I	ACGT	1 cut(s)	550
Hsp92II	CATG	3 cut(s)	250, 294, 403
HspAI	GCGC	1 cut(s)	238
Kpn2I	TCCGGA	1 cut(s)	228
Kzo9I	GATC	2 cut(s)	225, 448
LmnI	GCTCC	2 cut(s)	200, 592
LpnPI	CCDG	5 cut(s)	58, 125, 143, 242, 585
Lsp1109I	GCAGC	1 cut(s)	227
LweI	GCATC	1 cut(s)	547
MaeI	CTAG	1 cut(s)	353
MaeII	ACGT	1 cut(s)	550
MaeIII	GTNAC	2 cut(s)	107, 503
MalI	GATC	2 cut(s)	227, 450
MboI	GATC	2 cut(s)	225, 448
MboII	GAAGA	1 cut(s)	113
MflI	RGATCY	1 cut(s)	448
MhlI	GDGCHC	1 cut(s)	205
MluCI	AATT	4 cut(s)	207, 273, 468, 517
MnlI	CCTC	5 cut(s)	254, 334, 450, 554, 583
Mph1103I	ATGCAT	1 cut(s)	540
MroI	TCCGGA	1 cut(s)	228
MspI	CCGG	2 cut(s)	45, 229
NdeII	GATC	2 cut(s)	225, 448
NlaIII	CATG	3 cut(s)	250, 294, 403
NlaIV	GGNNCC	3 cut(s)	438, 564, 581
NmuCI	GTSAC	2 cut(s)	107, 503
NsiI	ATGCAT	1 cut(s)	540
PfeI	GAWTC	3 cut(s)	115, 414, 492
PkrI	GCNGC	1 cut(s)	242
PspN4I	GGNNCC	3 cut(s)	438, 564, 581
PspPI	GGNCC	2 cut(s)	436, 580
PsuI	RGATCY	1 cut(s)	448
RsaI	GTAC	3 cut(s)	5, 260, 553
RsaNI	GTAC	3 cut(s)	4, 259, 552
SatI	GCNGC	1 cut(s)	241
Sau3AI	GATC	2 cut(s)	225, 448
Sau96I	GGNCC	2 cut(s)	436, 580
SduI	GDGCHC	1 cut(s)	205
SfaNI	GCATC	1 cut(s)	547
SinI	GGWCC	1 cut(s)	436
Sse9I	AATT	4 cut(s)	207, 273, 468, 517
SsiI	CCGC	1 cut(s)	560
SspMI	CTAG	1 cut(s)	353
TaiI	ACGT	1 cut(s)	553
TaqI	TCGA	4 cut(s)	99, 315, 417, 429
TasI	AATT	4 cut(s)	207, 273, 468, 517
TatI	WGTACW	1 cut(s)	258
TfiI	GAWTC	3 cut(s)	115, 414, 492
TseFI	GTSAC	2 cut(s)	107, 503
TseI	GCWGC	1 cut(s)	240
Tsp45I	GTSAC	2 cut(s)	107, 503
TspDTI	ATGAA	2 cut(s)	105, 501
VpaK11BI	GGWCC	1 cut(s)	436
XagI	CCTNNNNNAGG	1 cut(s)	139
XapI	RAATTY	2 cut(s)	468, 517
XspI	CTAG	1 cut(s)	353
Zsp2I	ATGCAT	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.