Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0002339

Physical Location & Seq

Genomic Coordinates Reverse (-)

35411062 .. 35415496

Gene Structure 4435 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018757

Sequence Viewer

CDS Protein Promoter (2k)

Length: 819 bp

ATGCGTTTTGACAGCCTGGCTCTCGAAAAGAGATCAAAGGAATTGGCCCAAAAGATTGCAATGGAGGATGAGTCTGTGGTTCGAAGGTCTACTCGTGTGCGTGCTCCGCCAAGCAAAAATCCTGCCAATGCTTTCCTTGAGGTGAGAGTAGCAAGTCATCTCAATTATATTAGCGAGTTAGTAATATGCTCACTCGGTCTCCGGCTTTTCGGTTTGAACATGTACGGGAGAAAGGCCTCCCAATTGGTCAAAGAAATCGCAAGCACCGAAAAGGGGCAGCTCACCCCTTTCAGTAGTGACCTGTTTGATCAAGTGATTGAAGAATGTAAACAGCACTATCACGAGCTTGAATGCTTGATAAGGAGAATGGAAGAACAAGGATTAAATGTCGAAACAGCTAAAAATGAGGACCACTATGGAGCACTCATCCACCACCTCTCTTTAGTTCGCAATAAACGCTGCTTAATGGCATATGTGTACAACCGAGCAGAAATTTTACGAACTCTGATGTGGAAGGTAGGGTCTGTAATTCCTGAAGAAATTAAAGAGAAACTCAGTTACTCAGAGAAAGAGTACATTACAAAACATTCAGCATCTCTGAAAAAATATATGTCAAGCGTGGAACTCGATTTGGAAGTGGATATGGTACCACCAAAAGATCCCTACATCAAGGTGAGAGTCCTCGATGACTTGGGTGGAGAGATACTACTCAGTGATGATAAGAAAGCAAATTTTACTCGTCACTCAATGCATTTTCTTAAACGAACTGATGCCGAGCAGCTCATCTCACAGGGCAAGATGGAGGAGCTCAAAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sld5

Protein Analysis

273

Amino Acids

31.39

Weight (kDa)

7.13

Isoelectric Point (pI)

60.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sld5	PF05916	136 - 207	3.3e-13	GINS complex protein helical bundle domain
PSF1_C	PF24997	219 - 271	3.2e-29	PSF1 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80190 AT1G80190 AT1G80190 AT1G80190 AT1G80190 AT1G80190
fragaria_vesca	FvH4_1g25440 FvH4_1g25440 FvH4_1g25440 FvH4_1g25440 FvH4_1g25440 FvH4_6g30230
malus_domestica	MD17G1206800.v1.1
prunus_persica	Prupe.3G081400_v2.0.a1 Prupe.3G081400_v2.0.a1 Prupe.3G081400_v2.0.a1 Prupe.3G081400_v2.0.a1 Prupe.3G081400_v2.0.a1
pyrus_communis	pycom17g20960
rosa_chinensis	RchiOBHm_Chr2g0123461 RchiOBHm_Chr2g0136471
rosa_laevigata	RLG00000018757 RLG00000019534
rosa_multiflora	Rmu_co8456461.1_g000001 Rmu_sc0001998.1_g000001 Rmu_sc0005876.1_g000002 Rmu_sc0038680.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108260 Rroxscaffold_2G00120610
rosa_rugosa	Rorug02G0246000 Rorug02G0330800 Rorug02G0330900
rosa_samantha	Rh2AG304600 Rh2AG381800 Rh2BG312700 Rh2BG388500 Rh2CG291100 Rh2CG368200 Rh2DG328600 Rh2DG405000
rosa_wichuraiana	Rw2G024410 Rw2G031210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	646
AccB1I	GGYRCC	1 cut(s)	646
AccI	GTMKAC	1 cut(s)	89
AciI	CCGC	1 cut(s)	107
AclWI	GGATC	1 cut(s)	653
AcsI	RAATTY	2 cut(s)	492, 730
AcuI	CTGAAG	1 cut(s)	555
AfaI	GTAC	4 cut(s)	224, 479, 575, 648
AfiI	CCNNNNNNNGG	1 cut(s)	273
AflIII	ACRYGT	1 cut(s)	219
AgsI	TTSAA	3 cut(s)	217, 320, 350
AjnI	CCWGG	1 cut(s)	15
AluBI	AGCT	5 cut(s)	280, 346, 398, 781, 808
AluI	AGCT	5 cut(s)	280, 346, 398, 781, 808
Alw21I	GWGCWC	3 cut(s)	106, 424, 810
Alw26I	GTCTC	1 cut(s)	203
AlwI	GGATC	1 cut(s)	653
AoxI	GGCC	2 cut(s)	45, 234
ApeKI	GCWGC	3 cut(s)	277, 459, 778
ApoI	RAATTY	2 cut(s)	492, 730
Asp718I	GGTACC	1 cut(s)	646
AspS9I	GGNCC	2 cut(s)	46, 409
AsuHPI	GGTGA	3 cut(s)	154, 274, 685
AsuII	TTCGAA	1 cut(s)	82
AvaII	GGWCC	1 cut(s)	409
BanI	GGYRCC	1 cut(s)	646
BanII	GRGCYC	1 cut(s)	810
BauI	CACGAG	2 cut(s)	93, 341
Bbv12I	GWGCWC	3 cut(s)	106, 424, 810
BbvI	GCAGC	3 cut(s)	289, 446, 790
BccI	CCATC	1 cut(s)	793
BciT130I	CCWGG	1 cut(s)	17
BclI	TGATCA	1 cut(s)	307
BcoDI	GTCTC	1 cut(s)	203
BisI	GCNGC	3 cut(s)	278, 460, 779
BlsI	GCNGC	3 cut(s)	279, 461, 780
Bme1390I	CCNGG	1 cut(s)	17
Bme18I	GGWCC	1 cut(s)	409
BmgT120I	GGNCC	2 cut(s)	46, 409
BmiI	GGNNCC	1 cut(s)	648
BmrFI	CCNGG	1 cut(s)	17
BmsI	GCATC	2 cut(s)	602, 760
Bpu14I	TTCGAA	1 cut(s)	82
BpuEI	CTTGAG	1 cut(s)	158
BsaI	GGTCTC	1 cut(s)	203
BsaXI	ACNNNNNCTCC	4 cut(s)	56, 86, 183, 213
Bsc4I	CCNNNNNNNGG	1 cut(s)	273
Bse3DI	GCAATG	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	17
BseGI	GGATG	2 cut(s)	73, 426
BseLI	CCNNNNNNNGG	1 cut(s)	273
BseMI	GCAATG	1 cut(s)	66
BseMII	CTCAG	3 cut(s)	568, 576, 724
BseRI	GAGGAG	1 cut(s)	818
BseXI	GCAGC	3 cut(s)	289, 446, 790
BshFI	GGCC	2 cut(s)	47, 236
BshNI	GGYRCC	1 cut(s)	646
BsiHKAI	GWGCWC	3 cut(s)	106, 424, 810
BsiSI	CCGG	1 cut(s)	202
BslI	CCNNNNNNNGG	1 cut(s)	273
BsmAI	GTCTC	1 cut(s)	203
BsmI	GAATGC	1 cut(s)	356
BsnI	GGCC	2 cut(s)	47, 236
Bso31I	GGTCTC	1 cut(s)	203
Bsp119I	TTCGAA	1 cut(s)	82
Bsp1286I	GDGCHC	3 cut(s)	106, 424, 810
Bsp1407I	TGTACA	1 cut(s)	477
Bsp143I	GATC	3 cut(s)	32, 307, 658
BspACI	CCGC	1 cut(s)	107
BspANI	GGCC	2 cut(s)	47, 236
BspCNI	CTCAG	3 cut(s)	567, 575, 723
BspLI	GGNNCC	1 cut(s)	648
BspPI	GGATC	1 cut(s)	653
BspT104I	TTCGAA	1 cut(s)	82
BspT107I	GGYRCC	1 cut(s)	646
BspTNI	GGTCTC	1 cut(s)	203
BsrDI	GCAATG	1 cut(s)	66
BsrGI	TGTACA	1 cut(s)	477
BssMI	GATC	3 cut(s)	32, 307, 658
BssSI	CACGAG	2 cut(s)	93, 341
Bst2BI	CACGAG	2 cut(s)	93, 341
Bst2UI	CCWGG	1 cut(s)	17
BstAUI	TGTACA	1 cut(s)	477
BstBI	TTCGAA	1 cut(s)	82
BstC8I	GCNNGC	2 cut(s)	102, 262
BstDEI	CTNAG	3 cut(s)	554, 562, 710
BstF5I	GGATG	2 cut(s)	73, 426
BstKTI	GATC	3 cut(s)	35, 310, 661
BstMAI	GTCTC	1 cut(s)	203
BstMBI	GATC	3 cut(s)	32, 307, 658
BstMWI	GCNNNNNNNGC	2 cut(s)	106, 456
BstNI	CCWGG	1 cut(s)	17
BstNSI	RCATGY	1 cut(s)	223
BstSCI	CCNGG	1 cut(s)	15
BstV1I	GCAGC	3 cut(s)	289, 446, 790
BstX2I	RGATCY	1 cut(s)	658
BstYI	RGATCY	1 cut(s)	658
BsuRI	GGCC	2 cut(s)	47, 236
BtsCI	GGATG	2 cut(s)	73, 426
BtsIMutI	CAGTG	1 cut(s)	718
Cac8I	GCNNGC	2 cut(s)	102, 262
Cfr13I	GGNCC	2 cut(s)	46, 409
Csp6I	GTAC	4 cut(s)	223, 478, 574, 647
CviAII	CATG	1 cut(s)	220
CviQI	GTAC	4 cut(s)	223, 478, 574, 647
DdeI	CTNAG	3 cut(s)	554, 562, 710
DpnI	GATC	3 cut(s)	34, 309, 660
DpnII	GATC	3 cut(s)	32, 307, 658
EciI	GGCGGA	1 cut(s)	96
Ecl136II	GAGCTC	1 cut(s)	808
Eco147I	AGGCCT	1 cut(s)	236
Eco24I	GRGCYC	1 cut(s)	810
Eco31I	GGTCTC	1 cut(s)	203
Eco47I	GGWCC	1 cut(s)	409
Eco53kI	GAGCTC	1 cut(s)	808
Eco57I	CTGAAG	1 cut(s)	555
EcoICRI	GAGCTC	1 cut(s)	808
EcoRII	CCWGG	1 cut(s)	15
EcoT22I	ATGCAT	1 cut(s)	753
EcoT38I	GRGCYC	1 cut(s)	810
FaeI	CATG	1 cut(s)	223
FaiI	YATR	9 cut(s)	168, 187, 221, 417, 472, 474, 609, 611, 644
FatI	CATG	1 cut(s)	219
FauNDI	CATATG	1 cut(s)	472
FbaI	TGATCA	1 cut(s)	307
FblI	GTMKAC	1 cut(s)	89
Fnu4HI	GCNGC	3 cut(s)	278, 460, 779
FokI	GGATG	2 cut(s)	80, 413
FriOI	GRGCYC	1 cut(s)	810
Fsp4HI	GCNGC	3 cut(s)	278, 460, 779
GluI	GCNGC	3 cut(s)	278, 460, 779
HaeIII	GGCC	2 cut(s)	47, 236
HapII	CCGG	1 cut(s)	202
Hin1II	CATG	1 cut(s)	223
HinfI	GANTC	2 cut(s)	71, 678
HpaII	CCGG	1 cut(s)	202
HphI	GGTGA	3 cut(s)	154, 274, 685
Hpy166II	GTNNAC	3 cut(s)	90, 329, 478
Hpy188I	TCNGA	3 cut(s)	507, 565, 600
Hpy188III	TCNNGA	3 cut(s)	23, 341, 533
Hpy8I	GTNNAC	3 cut(s)	90, 329, 478
HpyAV	CCTTC	2 cut(s)	78, 508
HpyCH4V	TGCA	2 cut(s)	59, 751
HpyF10VI	GCNNNNNNNGC	2 cut(s)	106, 456
HpyF3I	CTNAG	3 cut(s)	554, 562, 710
Hsp92II	CATG	1 cut(s)	223
KpnI	GGTACC	1 cut(s)	650
Ksp22I	TGATCA	1 cut(s)	307
Kzo9I	GATC	3 cut(s)	32, 307, 658
LmnI	GCTCC	3 cut(s)	109, 419, 805
LpnPI	CCDG	7 cut(s)	2, 29, 135, 215, 314, 546, 776
Lsp1109I	GCAGC	3 cut(s)	289, 446, 790
LweI	GCATC	2 cut(s)	602, 760
MaeIII	GTNAC	3 cut(s)	296, 557, 740
MalI	GATC	3 cut(s)	34, 309, 660
MboI	GATC	3 cut(s)	32, 307, 658
MboII	GAAGA	3 cut(s)	332, 383, 548
MfeI	CAATTG	1 cut(s)	242
MflI	RGATCY	1 cut(s)	658
MhlI	GDGCHC	3 cut(s)	106, 424, 810
MluCI	AATT	7 cut(s)	41, 163, 242, 492, 528, 540, 730
MlyI	GAGTC	2 cut(s)	80, 687
MnlI	CCTC	7 cut(s)	58, 133, 247, 400, 446, 692, 796
Mph1103I	ATGCAT	1 cut(s)	753
MseI	TTAA	4 cut(s)	383, 464, 543, 759
MslI	CAYNNNNRTG	1 cut(s)	671
MspI	CCGG	1 cut(s)	202
MspR9I	CCNGG	1 cut(s)	17
MunI	CAATTG	1 cut(s)	242
Mva1269I	GAATGC	1 cut(s)	356
MvaI	CCWGG	1 cut(s)	17
MwoI	GCNNNNNNNGC	2 cut(s)	106, 456
NdeI	CATATG	1 cut(s)	472
NdeII	GATC	3 cut(s)	32, 307, 658
NlaIII	CATG	1 cut(s)	223
NlaIV	GGNNCC	1 cut(s)	648
NmeAIII	GCCGAG	1 cut(s)	799
NmuCI	GTSAC	2 cut(s)	296, 740
NsiI	ATGCAT	1 cut(s)	753
NspI	RCATGY	1 cut(s)	223
NspV	TTCGAA	1 cut(s)	82
PceI	AGGCCT	1 cut(s)	236
PciI	ACATGT	1 cut(s)	219
PcsI	WCGNNNNNNNCGW	1 cut(s)	264
PctI	GAATGC	1 cut(s)	356
PkrI	GCNGC	3 cut(s)	279, 461, 780
PleI	GAGTC	2 cut(s)	79, 686
PpsI	GAGTC	2 cut(s)	79, 686
PscI	ACATGT	1 cut(s)	219
Psp124BI	GAGCTC	1 cut(s)	810
Psp6I	CCWGG	1 cut(s)	15
PspGI	CCWGG	1 cut(s)	15
PspN4I	GGNNCC	1 cut(s)	648
PspPI	GGNCC	2 cut(s)	46, 409
PsuI	RGATCY	1 cut(s)	658
RsaI	GTAC	4 cut(s)	224, 479, 575, 648
RsaNI	GTAC	4 cut(s)	223, 478, 574, 647
RseI	CAYNNNNRTG	1 cut(s)	671
SacI	GAGCTC	1 cut(s)	810
SaqAI	TTAA	4 cut(s)	383, 464, 543, 759
SatI	GCNGC	3 cut(s)	278, 460, 779
Sau3AI	GATC	3 cut(s)	32, 307, 658
Sau96I	GGNCC	2 cut(s)	46, 409
SchI	GAGTC	2 cut(s)	80, 687
ScrFI	CCNGG	1 cut(s)	17
SduI	GDGCHC	3 cut(s)	106, 424, 810
SfaNI	GCATC	2 cut(s)	602, 760
SfuI	TTCGAA	1 cut(s)	82
SinI	GGWCC	1 cut(s)	409
SmiMI	CAYNNNNRTG	1 cut(s)	671
SmlI	CTYRAG	1 cut(s)	137
SmoI	CTYRAG	1 cut(s)	137
Sse9I	AATT	7 cut(s)	41, 163, 242, 492, 528, 540, 730
SseBI	AGGCCT	1 cut(s)	236
SsiI	CCGC	1 cut(s)	107
SstI	GAGCTC	1 cut(s)	810
StuI	AGGCCT	1 cut(s)	236
StyD4I	CCNGG	1 cut(s)	15
TaqI	TCGA	5 cut(s)	24, 82, 390, 627, 684
TaqII	GACCGA	1 cut(s)	185
TasI	AATT	7 cut(s)	41, 163, 242, 492, 528, 540, 730
TatI	WGTACW	2 cut(s)	477, 573
Tru1I	TTAA	4 cut(s)	383, 464, 543, 759
Tru9I	TTAA	4 cut(s)	383, 464, 543, 759
TscAI	CASTG	1 cut(s)	718
TseFI	GTSAC	2 cut(s)	296, 740
TseI	GCWGC	3 cut(s)	277, 459, 778
Tsp45I	GTSAC	2 cut(s)	296, 740
TspRI	CASTG	1 cut(s)	718
VpaK11BI	GGWCC	1 cut(s)	409
XapI	RAATTY	2 cut(s)	492, 730
XceI	RCATGY	1 cut(s)	223
XmiI	GTMKAC	1 cut(s)	89
Zsp2I	ATGCAT	1 cut(s)	753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.