Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002339

Physical Location & Seq

Genomic Coordinates Forward (+)

40798720 .. 40800787

Gene Structure 2068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0330800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 645 bp

ATGTCGTTGATCCCCAGAACCACACTCACACTCACACTGCCCAGAACACTCCTCGCCCTTCGATCCTTCTCCTGCAAAATGTCATCCGACCCGCCACCGTTGACTCACTCCCTCACTCTCCCGAGTCAACTCGCCGCCGAGCCCGTCCAGATCGTCGCCGCCCCCCACATCTCCTCCTCCCAGTTCAGGAGCGCTATTGATTCGTCTTTGTTTAAGCAGTGGCTGAAGAACATGGAGAGTGAAACTGGGATTCTAAGCGACGGTTCTTTGGCTCTGAAACGAGTTCTAATTCAGAGGATTGGGTTTCTGAAGTTTGAAGCAGATGTGATTGATAAAGAAACAGGGGAAAAGGTTCCAGGTATTGTGTTTGCACGCGGACCGGCTGTAGCTGTGCTTATACTTTTGGAATCGGAGGGCAAGGCTTATGCTGTTCTTACTGAACAGGTTAGAGTACCTGTTGGAAGGATCATACTGGAGTTGCCTGCTGGAATGTTGGATGATGACAAGGGTGATTTTCTCGGCACCACAATCCGTGAGGTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCAATATGTATATATAGCAGGACATAAGTTAGAAGCTGCTATTTATCGATATTACTGGCAAAGTAGCTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sld5

Protein Analysis

214

Amino Acids

23.44

Weight (kDa)

6.84

Isoelectric Point (pI)

49.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80190 AT1G80190 AT1G80190 AT1G80190 AT1G80190 AT1G80190
fragaria_vesca	FvH4_1g25440 FvH4_1g25440 FvH4_1g25440 FvH4_1g25440 FvH4_1g25440 FvH4_6g30230
malus_domestica	MD17G1206800.v1.1
prunus_persica	Prupe.3G081400_v2.0.a1 Prupe.3G081400_v2.0.a1 Prupe.3G081400_v2.0.a1 Prupe.3G081400_v2.0.a1 Prupe.3G081400_v2.0.a1
pyrus_communis	pycom17g20960
rosa_chinensis	RchiOBHm_Chr2g0123461 RchiOBHm_Chr2g0136471
rosa_laevigata	RLG00000018757 RLG00000019534
rosa_multiflora	Rmu_co8456461.1_g000001 Rmu_sc0001998.1_g000001 Rmu_sc0005876.1_g000002 Rmu_sc0038680.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108260 Rroxscaffold_2G00120610
rosa_rugosa	Rorug02G0246000 Rorug02G0330800 Rorug02G0330900
rosa_samantha	Rh2AG304600 Rh2AG381800 Rh2BG312700 Rh2BG388500 Rh2CG291100 Rh2CG368200 Rh2DG328600 Rh2DG405000
rosa_wichuraiana	Rw2G024410 Rw2G031210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	521
AccII	CGCG	1 cut(s)	375
AciI	CCGC	4 cut(s)	92, 135, 159, 375
AclWI	GGATC	3 cut(s)	4, 57, 473
AcuI	CTGAAG	2 cut(s)	245, 329
AfaI	GTAC	1 cut(s)	453
AfeI	AGCGCT	1 cut(s)	193
AfiI	CCNNNNNNNGG	1 cut(s)	186
AgsI	TTSAA	1 cut(s)	317
AjnI	CCWGG	1 cut(s)	355
AluBI	AGCT	3 cut(s)	389, 608, 639
AluI	AGCT	3 cut(s)	389, 608, 639
Alw26I	GTCTC	1 cut(s)	544
AlwI	GGATC	3 cut(s)	4, 57, 473
AlwNI	CAGNNNCTG	1 cut(s)	223
Ama87I	CYCGRG	1 cut(s)	121
Aor51HI	AGCGCT	1 cut(s)	193
ApeKI	GCWGC	1 cut(s)	608
Asp700I	GAANNNNTTC	1 cut(s)	351
AspLEI	GCGC	1 cut(s)	194
AspS9I	GGNCC	1 cut(s)	377
AsuHPI	GGTGA	1 cut(s)	521
AvaI	CYCGRG	1 cut(s)	121
AvaII	GGWCC	1 cut(s)	377
BanI	GGYRCC	1 cut(s)	521
BanII	GRGCYC	1 cut(s)	144
BbvI	GCAGC	1 cut(s)	595
BciT130I	CCWGG	1 cut(s)	357
BcoDI	GTCTC	1 cut(s)	544
BfmI	CTRYAG	1 cut(s)	384
BfoI	RGCGCY	1 cut(s)	195
BisI	GCNGC	3 cut(s)	135, 159, 609
BlsI	GCNGC	3 cut(s)	136, 160, 610
Bme1390I	CCNGG	1 cut(s)	357
Bme18I	GGWCC	1 cut(s)	377
BmeT110I	CYCGRG	1 cut(s)	121
BmgT120I	GGNCC	1 cut(s)	377
BmiI	GGNNCC	2 cut(s)	354, 523
BmrFI	CCNGG	1 cut(s)	357
BmrI	ACTGGG	2 cut(s)	175, 255
BmuI	ACTGGG	2 cut(s)	175, 255
BpmI	CTGGAG	1 cut(s)	494
Bsa29I	ATCGAT	1 cut(s)	619
BsaI	GGTCTC	1 cut(s)	544
BsaXI	ACNNNNNCTCC	2 cut(s)	158, 188
Bsc4I	CCNNNNNNNGG	1 cut(s)	186
Bse118I	RCCGGY	1 cut(s)	379
Bse1I	ACTGG	4 cut(s)	181, 250, 477, 632
BseBI	CCWGG	1 cut(s)	357
BseCI	ATCGAT	1 cut(s)	619
BseGI	GGATG	2 cut(s)	83, 502
BseLI	CCNNNNNNNGG	1 cut(s)	186
BseNI	ACTGG	4 cut(s)	181, 250, 477, 632
BseRI	GAGGAG	3 cut(s)	41, 163, 166
BseXI	GCAGC	1 cut(s)	595
Bsh1236I	CGCG	1 cut(s)	375
BshNI	GGYRCC	1 cut(s)	521
BshVI	ATCGAT	1 cut(s)	619
BsiHKCI	CYCGRG	1 cut(s)	121
BsiSI	CCGG	1 cut(s)	380
BslI	CCNNNNNNNGG	1 cut(s)	186
BsmAI	GTCTC	1 cut(s)	544
Bso31I	GGTCTC	1 cut(s)	544
BsoBI	CYCGRG	1 cut(s)	121
Bsp1286I	GDGCHC	1 cut(s)	144
Bsp143I	GATC	4 cut(s)	9, 62, 150, 465
BspACI	CCGC	4 cut(s)	92, 135, 159, 375
BspDI	ATCGAT	1 cut(s)	619
BspFNI	CGCG	1 cut(s)	375
BspLI	GGNNCC	2 cut(s)	354, 523
BspPI	GGATC	3 cut(s)	4, 57, 473
BspT107I	GGYRCC	1 cut(s)	521
BspTNI	GGTCTC	1 cut(s)	544
BsrFI	RCCGGY	1 cut(s)	379
BsrI	ACTGG	4 cut(s)	181, 250, 477, 632
BssAI	RCCGGY	1 cut(s)	379
BssMI	GATC	4 cut(s)	9, 62, 150, 465
Bst2UI	CCWGG	1 cut(s)	357
Bst4CI	ACNGT	2 cut(s)	99, 263
BstC8I	GCNNGC	2 cut(s)	373, 483
BstDEI	CTNAG	1 cut(s)	254
BstF5I	GGATG	2 cut(s)	83, 502
BstFNI	CGCG	1 cut(s)	375
BstH2I	RGCGCY	1 cut(s)	195
BstHHI	GCGC	1 cut(s)	194
BstKTI	GATC	4 cut(s)	12, 65, 153, 468
BstMAI	GTCTC	1 cut(s)	544
BstMBI	GATC	4 cut(s)	9, 62, 150, 465
BstNI	CCWGG	1 cut(s)	357
BstSCI	CCNGG	1 cut(s)	355
BstSFI	CTRYAG	1 cut(s)	384
BstUI	CGCG	1 cut(s)	375
BstV1I	GCAGC	1 cut(s)	595
Bsu15I	ATCGAT	1 cut(s)	619
BsuTUI	ATCGAT	1 cut(s)	619
BtsCI	GGATG	2 cut(s)	83, 502
BtsI	GCAGTG	2 cut(s)	35, 224
BtsIMutI	CAGTG	2 cut(s)	35, 224
Cac8I	GCNNGC	2 cut(s)	373, 483
CaiI	CAGNNNCTG	1 cut(s)	223
CfoI	GCGC	1 cut(s)	194
Cfr10I	RCCGGY	1 cut(s)	379
Cfr13I	GGNCC	1 cut(s)	377
ClaI	ATCGAT	1 cut(s)	619
CpoI	CGGWCCG	1 cut(s)	377
Csp6I	GTAC	1 cut(s)	452
CspI	CGGWCCG	1 cut(s)	377
CviAII	CATG	1 cut(s)	232
CviJI	RGCY	8 cut(s)	142, 223, 272, 383, 389, 422, 608, 639
CviKI_1	RGCY	8 cut(s)	142, 223, 272, 383, 389, 422, 608, 639
CviQI	GTAC	1 cut(s)	452
DdeI	CTNAG	1 cut(s)	254
DpnI	GATC	4 cut(s)	11, 64, 152, 467
DpnII	GATC	4 cut(s)	9, 62, 150, 465
Eco24I	GRGCYC	1 cut(s)	144
Eco31I	GGTCTC	1 cut(s)	544
Eco47I	GGWCC	1 cut(s)	377
Eco47III	AGCGCT	1 cut(s)	193
Eco57I	CTGAAG	2 cut(s)	245, 329
Eco88I	CYCGRG	1 cut(s)	121
EcoRII	CCWGG	1 cut(s)	355
EcoT38I	GRGCYC	1 cut(s)	144
FaeI	CATG	1 cut(s)	235
FaiI	YATR	9 cut(s)	233, 398, 426, 470, 579, 583, 585, 587, 597
FalI	AAGNNNNNCTT	1 cut(s)	625
FatI	CATG	1 cut(s)	231
FauI	CCCGC	1 cut(s)	99
Fnu4HI	GCNGC	3 cut(s)	135, 159, 609
FokI	GGATG	2 cut(s)	70, 509
FriOI	GRGCYC	1 cut(s)	144
Fsp4HI	GCNGC	3 cut(s)	135, 159, 609
GlaI	GCGC	1 cut(s)	193
GluI	GCNGC	3 cut(s)	135, 159, 609
GsuI	CTGGAG	1 cut(s)	494
HaeII	RGCGCY	1 cut(s)	195
HapII	CCGG	1 cut(s)	380
HhaI	GCGC	1 cut(s)	194
Hin1II	CATG	1 cut(s)	235
Hin6I	GCGC	1 cut(s)	192
HinP1I	GCGC	1 cut(s)	192
HincII	GTYRAC	2 cut(s)	102, 128
HindII	GTYRAC	2 cut(s)	102, 128
HinfI	GANTC	5 cut(s)	103, 124, 200, 250, 407
HpaII	CCGG	1 cut(s)	380
HphI	GGTGA	1 cut(s)	521
Hpy166II	GTNNAC	2 cut(s)	102, 128
Hpy188I	TCNGA	5 cut(s)	88, 276, 294, 309, 412
Hpy188III	TCNNGA	4 cut(s)	121, 148, 187, 642
Hpy8I	GTNNAC	2 cut(s)	102, 128
Hpy99I	CGWCG	2 cut(s)	158, 263
HpyAV	CCTTC	3 cut(s)	68, 76, 456
HpyCH4III	ACNGT	2 cut(s)	99, 263
HpyCH4V	TGCA	2 cut(s)	75, 371
HpyF3I	CTNAG	1 cut(s)	254
Hsp92II	CATG	1 cut(s)	235
HspAI	GCGC	1 cut(s)	192
Kzo9I	GATC	4 cut(s)	9, 62, 150, 465
LmnI	GCTCC	1 cut(s)	189
Lsp1109I	GCAGC	1 cut(s)	595
MalI	GATC	4 cut(s)	11, 64, 152, 467
MboI	GATC	4 cut(s)	9, 62, 150, 465
MboII	GAAGA	1 cut(s)	238
MhlI	GDGCHC	1 cut(s)	144
MluCI	AATT	1 cut(s)	288
MlyI	GAGTC	2 cut(s)	97, 133
MmeI	TCCRAC	3 cut(s)	111, 439, 474
MnlI	CCTC	7 cut(s)	62, 122, 184, 187, 288, 406, 529
MroXI	GAANNNNTTC	1 cut(s)	351
MseI	TTAA	1 cut(s)	213
MspI	CCGG	1 cut(s)	380
MspR9I	CCNGG	1 cut(s)	357
MvaI	CCWGG	1 cut(s)	357
MvnI	CGCG	1 cut(s)	375
NdeII	GATC	4 cut(s)	9, 62, 150, 465
NlaIII	CATG	1 cut(s)	235
NlaIV	GGNNCC	2 cut(s)	354, 523
NmeAIII	GCCGAG	2 cut(s)	163, 498
PdmI	GAANNNNTTC	1 cut(s)	351
PfeI	GAWTC	3 cut(s)	200, 250, 407
PkrI	GCNGC	3 cut(s)	136, 160, 610
PleI	GAGTC	2 cut(s)	97, 132
PpsI	GAGTC	2 cut(s)	97, 132
Psp6I	CCWGG	1 cut(s)	355
PspGI	CCWGG	1 cut(s)	355
PspN4I	GGNNCC	2 cut(s)	354, 523
PspPI	GGNCC	1 cut(s)	377
PstNI	CAGNNNCTG	1 cut(s)	223
RsaI	GTAC	1 cut(s)	453
RsaNI	GTAC	1 cut(s)	452
Rsr2I	CGGWCCG	1 cut(s)	377
RsrII	CGGWCCG	1 cut(s)	377
SaqAI	TTAA	1 cut(s)	213
SatI	GCNGC	3 cut(s)	135, 159, 609
Sau3AI	GATC	4 cut(s)	9, 62, 150, 465
Sau96I	GGNCC	1 cut(s)	377
SchI	GAGTC	2 cut(s)	97, 133
ScrFI	CCNGG	1 cut(s)	357
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	8 cut(s)	354, 361, 391, 447, 457, 540, 610, 641
SfcI	CTRYAG	1 cut(s)	384
SinI	GGWCC	1 cut(s)	377
Sse9I	AATT	1 cut(s)	288
SsiI	CCGC	4 cut(s)	92, 135, 159, 375
StyD4I	CCNGG	1 cut(s)	355
TaaI	ACNGT	2 cut(s)	99, 263
TaqI	TCGA	2 cut(s)	61, 619
TasI	AATT	1 cut(s)	288
TauI	GCSGC	2 cut(s)	137, 161
TfiI	GAWTC	3 cut(s)	200, 250, 407
Tru1I	TTAA	1 cut(s)	213
Tru9I	TTAA	1 cut(s)	213
TscAI	CASTG	2 cut(s)	42, 224
TseI	GCWGC	1 cut(s)	608
TspGWI	ACGGA	1 cut(s)	521
TspRI	CASTG	2 cut(s)	42, 224
VpaK11BI	GGWCC	1 cut(s)	377
XmnI	GAANNNNTTC	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.