FvH4_6g30230

DNA replication complex GINS protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0002339
Physical Location & Seq
Forward (+)
23340841 .. 23343191
2351 bp
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UTR
Exon/CDS
Intron
FvH4_6g30230.t1

Sequence Viewer

Length: 417 bp
ATGTATGGAAGAAAAGCCTGCCAATTGGTCAAAGAAATTGCAAGTGCTGAAAAAGGCCAGCTCACGCCTTTCAGTAGTGACCTATGTGATGAAGTAATTGAAGAATGTAAACAGCATTATCATGAGCTTGAATGCTTGATAAGCCACTGCTACTTTACAATCTGTCTGAAACTCACAGTTAAGATGTGCCAACTGAAGGATTTGAAATATGCCTATTGTTTAGTAGATGCTCCAAGGGATATGGTGCCACCAAAAGATCCTTACATCAAGGTGCGAGTTCTTGATGACATGGGTGGAGATATACTACTCAGCGATGATAAGAAAGCAAATTTTACTCGTCACTCAATGCATTTTCTTAAACGAACTGATGCTGAACAGCTCATCTCACAGGGCAAGATGGAGGAGCTCAAAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sld5

Protein Analysis

139

Amino Acids

15.94

Weight (kDa)

5.95

Isoelectric Point (pI)

55.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PSF1_C PF24997 85 - 137 1.3e-29 PSF1 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 244
AclWI GGATC 1 cut(s) 251
AcsI RAATTY 1 cut(s) 328
AcuI CTGAAG 1 cut(s) 215
AfiI CCNNNNNNNGG 1 cut(s) 196
AgsI TTSAA 3 cut(s) 101, 131, 205
AluBI AGCT 4 cut(s) 61, 127, 379, 406
AluI AGCT 4 cut(s) 61, 127, 379, 406
Alw21I GWGCWC 1 cut(s) 408
AlwI GGATC 1 cut(s) 251
AoxI GGCC 1 cut(s) 55
ApoI RAATTY 1 cut(s) 328
BanI GGYRCC 1 cut(s) 244
BanII GRGCYC 1 cut(s) 408
Bbv12I GWGCWC 1 cut(s) 408
BccI CCATC 1 cut(s) 391
BmiI GGNNCC 1 cut(s) 246
BmsI GCATC 2 cut(s) 217, 358
BsaJI CCNNGG 1 cut(s) 233
Bsc4I CCNNNNNNNGG 1 cut(s) 196
BseDI CCNNGG 1 cut(s) 233
BseLI CCNNNNNNNGG 1 cut(s) 196
BseMII CTCAG 1 cut(s) 322
BseRI GAGGAG 1 cut(s) 416
BshFI GGCC 1 cut(s) 57
BshNI GGYRCC 1 cut(s) 244
BsiHKAI GWGCWC 1 cut(s) 408
BslI CCNNNNNNNGG 1 cut(s) 196
BsmI GAATGC 1 cut(s) 137
BsnI GGCC 1 cut(s) 57
Bsp1286I GDGCHC 1 cut(s) 408
Bsp143I GATC 1 cut(s) 256
BspANI GGCC 1 cut(s) 57
BspCNI CTCAG 1 cut(s) 321
BspHI TCATGA 1 cut(s) 121
BspLI GGNNCC 1 cut(s) 246
BspPI GGATC 1 cut(s) 251
BspT107I GGYRCC 1 cut(s) 244
BssECI CCNNGG 1 cut(s) 233
BssMI GATC 1 cut(s) 256
BssT1I CCWWGG 1 cut(s) 233
Bst4CI ACNGT 1 cut(s) 178
BstC8I GCNNGC 2 cut(s) 19, 59
BstDEI CTNAG 1 cut(s) 308
BstKTI GATC 1 cut(s) 259
BstMBI GATC 1 cut(s) 256
BstMWI GCNNNNNNNGC 1 cut(s) 141
BstX2I RGATCY 1 cut(s) 256
BstYI RGATCY 1 cut(s) 256
BsuRI GGCC 1 cut(s) 57
BtgZI GCGATG 1 cut(s) 327
BtsI GCAGTG 1 cut(s) 145
BtsIMutI CAGTG 1 cut(s) 145
Cac8I GCNNGC 2 cut(s) 19, 59
CciI TCATGA 1 cut(s) 121
CviAII CATG 2 cut(s) 122, 289
CviJI RGCY 7 cut(s) 17, 57, 61, 127, 144, 379, 406
CviKI_1 RGCY 7 cut(s) 17, 57, 61, 127, 144, 379, 406
DdeI CTNAG 1 cut(s) 308
DpnI GATC 1 cut(s) 258
DpnII GATC 1 cut(s) 256
Ecl136II GAGCTC 1 cut(s) 406
Eco130I CCWWGG 1 cut(s) 233
Eco24I GRGCYC 1 cut(s) 408
Eco53kI GAGCTC 1 cut(s) 406
Eco57I CTGAAG 1 cut(s) 215
EcoICRI GAGCTC 1 cut(s) 406
EcoT14I CCWWGG 1 cut(s) 233
EcoT22I ATGCAT 1 cut(s) 351
EcoT38I GRGCYC 1 cut(s) 408
ErhI CCWWGG 1 cut(s) 233
FaeI CATG 2 cut(s) 125, 292
FaiI YATR 7 cut(s) 6, 85, 123, 210, 242, 290, 302
FatI CATG 2 cut(s) 121, 288
FriOI GRGCYC 1 cut(s) 408
HaeIII GGCC 1 cut(s) 57
Hin1II CATG 2 cut(s) 125, 292
Hpy166II GTNNAC 1 cut(s) 110
Hpy188I TCNGA 1 cut(s) 168
Hpy188III TCNNGA 2 cut(s) 122, 281
Hpy8I GTNNAC 1 cut(s) 110
HpyAV CCTTC 1 cut(s) 190
HpyCH4III ACNGT 1 cut(s) 178
HpyCH4V TGCA 2 cut(s) 41, 349
HpyF10VI GCNNNNNNNGC 1 cut(s) 141
HpyF3I CTNAG 1 cut(s) 308
Hsp92II CATG 2 cut(s) 125, 292
Kzo9I GATC 1 cut(s) 256
LmnI GCTCC 2 cut(s) 235, 403
LpnPI CCDG 3 cut(s) 31, 71, 374
LweI GCATC 2 cut(s) 217, 358
MaeIII GTNAC 2 cut(s) 77, 338
MalI GATC 1 cut(s) 258
MboI GATC 1 cut(s) 256
MboII GAAGA 2 cut(s) 21, 113
MfeI CAATTG 1 cut(s) 23
MflI RGATCY 1 cut(s) 256
MhlI GDGCHC 1 cut(s) 408
MluCI AATT 4 cut(s) 23, 36, 96, 328
MnlI CCTC 1 cut(s) 394
Mph1103I ATGCAT 1 cut(s) 351
MseI TTAA 2 cut(s) 180, 357
MslI CAYNNNNRTG 2 cut(s) 120, 269
MunI CAATTG 1 cut(s) 23
Mva1269I GAATGC 1 cut(s) 137
MwoI GCNNNNNNNGC 1 cut(s) 141
NdeII GATC 1 cut(s) 256
NlaIII CATG 2 cut(s) 125, 292
NlaIV GGNNCC 1 cut(s) 246
NmuCI GTSAC 2 cut(s) 77, 338
NsiI ATGCAT 1 cut(s) 351
PagI TCATGA 1 cut(s) 121
PctI GAATGC 1 cut(s) 137
Psp124BI GAGCTC 1 cut(s) 408
PspN4I GGNNCC 1 cut(s) 246
PsuI RGATCY 1 cut(s) 256
RseI CAYNNNNRTG 2 cut(s) 120, 269
SacI GAGCTC 1 cut(s) 408
SaqAI TTAA 2 cut(s) 180, 357
Sau3AI GATC 1 cut(s) 256
SduI GDGCHC 1 cut(s) 408
SetI ASST 6 cut(s) 63, 84, 129, 273, 381, 408
SfaNI GCATC 2 cut(s) 217, 358
SmiMI CAYNNNNRTG 2 cut(s) 120, 269
Sse9I AATT 4 cut(s) 23, 36, 96, 328
SstI GAGCTC 1 cut(s) 408
StyI CCWWGG 1 cut(s) 233
TaaI ACNGT 1 cut(s) 178
TasI AATT 4 cut(s) 23, 36, 96, 328
Tru1I TTAA 2 cut(s) 180, 357
Tru9I TTAA 2 cut(s) 180, 357
TscAI CASTG 1 cut(s) 152
TseFI GTSAC 2 cut(s) 77, 338
Tsp45I GTSAC 2 cut(s) 77, 338
TspDTI ATGAA 1 cut(s) 105
TspRI CASTG 1 cut(s) 152
XapI RAATTY 1 cut(s) 328
Zsp2I ATGCAT 1 cut(s) 351
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.