Rmu_sc0038680.1_g000001

DNA replication complex GINS protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0038680.1
Physical Location & Seq
Reverse (-)
1 .. 3742
3742 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0038680.1_g000001.1.cds

Sequence Viewer

Length: 426 bp
atggaagaacaaggattaaatgtcgaaacagctaaaaatgaggaccactatggagcactcatccaccacctctctttagttcgcaataaacgctgcttaatggcatatgtgtacaaccgagcagaaattttacgaacgctgatgtggaagttagggtctgtaattcctgaagaaattaaagagaaactcagttactcagagaaagagtacattacaaaacattcagcatctctgaaaaaatatatgtcaagcgtggaacttgatttggaagtggatatggtaccaccaaaagatccctacatcaaggtcagagtcctcgatgacttgggtggagagatactactcagtgatgataagaaagcaaattttactcgccactcaatgcattttcttaaacgaactgatgccgagcagctcatctcacag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

142

Amino Acids

16.51

Weight (kDa)

6.3

Isoelectric Point (pI)

50.41

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 280
AccB1I GGYRCC 1 cut(s) 280
AclWI GGATC 1 cut(s) 287
AcsI RAATTY 2 cut(s) 126, 364
AcuI CTGAAG 1 cut(s) 189
AfaI GTAC 3 cut(s) 113, 209, 282
AluBI AGCT 2 cut(s) 32, 415
AluI AGCT 2 cut(s) 32, 415
Alw21I GWGCWC 1 cut(s) 58
AlwI GGATC 1 cut(s) 287
ApeKI GCWGC 2 cut(s) 93, 412
ApoI RAATTY 2 cut(s) 126, 364
Asp718I GGTACC 1 cut(s) 280
AspS9I GGNCC 1 cut(s) 43
AvaII GGWCC 1 cut(s) 43
BanI GGYRCC 1 cut(s) 280
Bbv12I GWGCWC 1 cut(s) 58
BbvI GCAGC 1 cut(s) 80
BisI GCNGC 2 cut(s) 94, 413
BlsI GCNGC 2 cut(s) 95, 414
Bme18I GGWCC 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 43
BmiI GGNNCC 1 cut(s) 282
BmsI GCATC 2 cut(s) 236, 394
BseGI GGATG 1 cut(s) 60
BseMII CTCAG 3 cut(s) 202, 210, 358
BseXI GCAGC 1 cut(s) 80
BshNI GGYRCC 1 cut(s) 280
BsiHKAI GWGCWC 1 cut(s) 58
Bsp1286I GDGCHC 1 cut(s) 58
Bsp1407I TGTACA 1 cut(s) 111
Bsp143I GATC 1 cut(s) 292
BspCNI CTCAG 3 cut(s) 201, 209, 357
BspLI GGNNCC 1 cut(s) 282
BspPI GGATC 1 cut(s) 287
BspT107I GGYRCC 1 cut(s) 280
BsrGI TGTACA 1 cut(s) 111
BssMI GATC 1 cut(s) 292
BstAUI TGTACA 1 cut(s) 111
BstDEI CTNAG 3 cut(s) 188, 196, 344
BstF5I GGATG 1 cut(s) 60
BstKTI GATC 1 cut(s) 295
BstMBI GATC 1 cut(s) 292
BstMWI GCNNNNNNNGC 1 cut(s) 90
BstV1I GCAGC 1 cut(s) 80
BstX2I RGATCY 1 cut(s) 292
BstYI RGATCY 1 cut(s) 292
BtsCI GGATG 1 cut(s) 60
BtsIMutI CAGTG 1 cut(s) 352
Cfr13I GGNCC 1 cut(s) 43
Csp6I GTAC 3 cut(s) 112, 208, 281
CviJI RGCY 2 cut(s) 32, 415
CviKI_1 RGCY 2 cut(s) 32, 415
CviQI GTAC 3 cut(s) 112, 208, 281
DdeI CTNAG 3 cut(s) 188, 196, 344
DpnI GATC 1 cut(s) 294
DpnII GATC 1 cut(s) 292
Eco47I GGWCC 1 cut(s) 43
Eco57I CTGAAG 1 cut(s) 189
EcoT22I ATGCAT 1 cut(s) 387
FaiI YATR 6 cut(s) 51, 106, 108, 243, 245, 278
FauNDI CATATG 1 cut(s) 106
Fnu4HI GCNGC 2 cut(s) 94, 413
FokI GGATG 1 cut(s) 47
Fsp4HI GCNGC 2 cut(s) 94, 413
GluI GCNGC 2 cut(s) 94, 413
HinfI GANTC 1 cut(s) 312
Hpy166II GTNNAC 1 cut(s) 112
Hpy188I TCNGA 3 cut(s) 199, 234, 311
Hpy188III TCNNGA 1 cut(s) 167
Hpy8I GTNNAC 1 cut(s) 112
HpyCH4V TGCA 1 cut(s) 385
HpyF10VI GCNNNNNNNGC 1 cut(s) 90
HpyF3I CTNAG 3 cut(s) 188, 196, 344
KpnI GGTACC 1 cut(s) 284
Kzo9I GATC 1 cut(s) 292
LmnI GCTCC 1 cut(s) 53
LpnPI CCDG 1 cut(s) 180
Lsp1109I GCAGC 1 cut(s) 80
LweI GCATC 2 cut(s) 236, 394
MaeIII GTNAC 1 cut(s) 191
MalI GATC 1 cut(s) 294
MboI GATC 1 cut(s) 292
MboII GAAGA 2 cut(s) 17, 182
MflI RGATCY 1 cut(s) 292
MhlI GDGCHC 1 cut(s) 58
MluCI AATT 4 cut(s) 126, 162, 174, 364
MlyI GAGTC 1 cut(s) 321
MnlI CCTC 3 cut(s) 34, 80, 326
Mph1103I ATGCAT 1 cut(s) 387
MseI TTAA 4 cut(s) 17, 98, 177, 393
MwoI GCNNNNNNNGC 1 cut(s) 90
NdeI CATATG 1 cut(s) 106
NdeII GATC 1 cut(s) 292
NlaIV GGNNCC 1 cut(s) 282
NsiI ATGCAT 1 cut(s) 387
PkrI GCNGC 2 cut(s) 95, 414
PleI GAGTC 1 cut(s) 320
PpsI GAGTC 1 cut(s) 320
PspN4I GGNNCC 1 cut(s) 282
PspPI GGNCC 1 cut(s) 43
PsuI RGATCY 1 cut(s) 292
RsaI GTAC 3 cut(s) 113, 209, 282
RsaNI GTAC 3 cut(s) 112, 208, 281
SaqAI TTAA 4 cut(s) 17, 98, 177, 393
SatI GCNGC 2 cut(s) 94, 413
Sau3AI GATC 1 cut(s) 292
Sau96I GGNCC 1 cut(s) 43
SchI GAGTC 1 cut(s) 321
SduI GDGCHC 1 cut(s) 58
SetI ASST 4 cut(s) 34, 72, 309, 417
SfaNI GCATC 2 cut(s) 236, 394
SinI GGWCC 1 cut(s) 43
Sse9I AATT 4 cut(s) 126, 162, 174, 364
TaqI TCGA 2 cut(s) 24, 318
TasI AATT 4 cut(s) 126, 162, 174, 364
TatI WGTACW 2 cut(s) 111, 207
Tru1I TTAA 4 cut(s) 17, 98, 177, 393
Tru9I TTAA 4 cut(s) 17, 98, 177, 393
TscAI CASTG 1 cut(s) 352
TseI GCWGC 2 cut(s) 93, 412
TspRI CASTG 1 cut(s) 352
VpaK11BI GGWCC 1 cut(s) 43
XapI RAATTY 2 cut(s) 126, 364
Zsp2I ATGCAT 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.