Rh2BG312700

DNA replication complex GINS protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0002339
Physical Location & Seq
Reverse (-)
36752451 .. 36756132
3682 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG312700.1

Sequence Viewer

Length: 453 bp
ATGGAAGAACAAGGATTAAATGTCGAAACAGCTAAAAATGAGGACCACTATGGAGCACTCATCCACCACCTCTCTTTAGTTCGCAATAAACGCTGCTTAATGGCATATGTGTACAACCGAGCAGAAATTTTACGAACGCTGATGTGGAAGGTAGGGTCTGTAATTCCTGAAGAAATTAAAGAGAAACTCAGTTACTCAGAGAAAGAGTACATTACAAAACATTCAGCATCTCTGAAAAAATATATGTCAAGCGTGGAACTTGATTTGGAAGTGGATATGGTACCACCAAAAGATCCCTACATCAAGGTCAGAGTCCTCGATGACTTGGGTGGAGAGATACTACTCAGTGATGATAAGAAAGCAAATTTTACTCGCCACTCAATGCATTTTCTTAAACGAACTGATGCCGAGCAGCTCATCTCACAGGGCAAGATGGAGGAGCTCAAAGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sld5

Protein Analysis

150

Amino Acids

17.43

Weight (kDa)

6.09

Isoelectric Point (pI)

50.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sld5 PF05916 14 - 85 1.1e-13 GINS complex protein helical bundle domain
PSF1_C PF24997 97 - 149 1.1e-29 PSF1 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 280
AccB1I GGYRCC 1 cut(s) 280
AclWI GGATC 1 cut(s) 287
AcsI RAATTY 2 cut(s) 126, 364
AcuI CTGAAG 1 cut(s) 189
AfaI GTAC 3 cut(s) 113, 209, 282
AluBI AGCT 3 cut(s) 32, 415, 442
AluI AGCT 3 cut(s) 32, 415, 442
Alw21I GWGCWC 2 cut(s) 58, 444
AlwI GGATC 1 cut(s) 287
ApeKI GCWGC 2 cut(s) 93, 412
ApoI RAATTY 2 cut(s) 126, 364
Asp718I GGTACC 1 cut(s) 280
AspS9I GGNCC 1 cut(s) 43
AvaII GGWCC 1 cut(s) 43
BanI GGYRCC 1 cut(s) 280
BanII GRGCYC 1 cut(s) 444
Bbv12I GWGCWC 2 cut(s) 58, 444
BbvI GCAGC 2 cut(s) 80, 424
BccI CCATC 1 cut(s) 427
BisI GCNGC 2 cut(s) 94, 413
BlsI GCNGC 2 cut(s) 95, 414
Bme18I GGWCC 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 43
BmiI GGNNCC 1 cut(s) 282
BmsI GCATC 2 cut(s) 236, 394
BseGI GGATG 1 cut(s) 60
BseMII CTCAG 3 cut(s) 202, 210, 358
BseRI GAGGAG 1 cut(s) 452
BseXI GCAGC 2 cut(s) 80, 424
BshNI GGYRCC 1 cut(s) 280
BsiHKAI GWGCWC 2 cut(s) 58, 444
Bsp1286I GDGCHC 2 cut(s) 58, 444
Bsp1407I TGTACA 1 cut(s) 111
Bsp143I GATC 1 cut(s) 292
BspCNI CTCAG 3 cut(s) 201, 209, 357
BspLI GGNNCC 1 cut(s) 282
BspPI GGATC 1 cut(s) 287
BspT107I GGYRCC 1 cut(s) 280
BsrGI TGTACA 1 cut(s) 111
BssMI GATC 1 cut(s) 292
BstAUI TGTACA 1 cut(s) 111
BstDEI CTNAG 3 cut(s) 188, 196, 344
BstF5I GGATG 1 cut(s) 60
BstKTI GATC 1 cut(s) 295
BstMBI GATC 1 cut(s) 292
BstMWI GCNNNNNNNGC 1 cut(s) 90
BstV1I GCAGC 2 cut(s) 80, 424
BstX2I RGATCY 1 cut(s) 292
BstYI RGATCY 1 cut(s) 292
BtsCI GGATG 1 cut(s) 60
BtsIMutI CAGTG 1 cut(s) 352
Cfr13I GGNCC 1 cut(s) 43
Csp6I GTAC 3 cut(s) 112, 208, 281
CviJI RGCY 3 cut(s) 32, 415, 442
CviKI_1 RGCY 3 cut(s) 32, 415, 442
CviQI GTAC 3 cut(s) 112, 208, 281
DdeI CTNAG 3 cut(s) 188, 196, 344
DpnI GATC 1 cut(s) 294
DpnII GATC 1 cut(s) 292
Ecl136II GAGCTC 1 cut(s) 442
Eco24I GRGCYC 1 cut(s) 444
Eco47I GGWCC 1 cut(s) 43
Eco53kI GAGCTC 1 cut(s) 442
Eco57I CTGAAG 1 cut(s) 189
EcoICRI GAGCTC 1 cut(s) 442
EcoT22I ATGCAT 1 cut(s) 387
EcoT38I GRGCYC 1 cut(s) 444
FaiI YATR 6 cut(s) 51, 106, 108, 243, 245, 278
FauNDI CATATG 1 cut(s) 106
Fnu4HI GCNGC 2 cut(s) 94, 413
FokI GGATG 1 cut(s) 47
FriOI GRGCYC 1 cut(s) 444
Fsp4HI GCNGC 2 cut(s) 94, 413
GluI GCNGC 2 cut(s) 94, 413
HinfI GANTC 1 cut(s) 312
Hpy166II GTNNAC 1 cut(s) 112
Hpy188I TCNGA 3 cut(s) 199, 234, 311
Hpy188III TCNNGA 1 cut(s) 167
Hpy8I GTNNAC 1 cut(s) 112
HpyAV CCTTC 1 cut(s) 142
HpyCH4V TGCA 1 cut(s) 385
HpyF10VI GCNNNNNNNGC 1 cut(s) 90
HpyF3I CTNAG 3 cut(s) 188, 196, 344
KpnI GGTACC 1 cut(s) 284
Kzo9I GATC 1 cut(s) 292
LmnI GCTCC 2 cut(s) 53, 439
LpnPI CCDG 2 cut(s) 180, 410
Lsp1109I GCAGC 2 cut(s) 80, 424
LweI GCATC 2 cut(s) 236, 394
MaeIII GTNAC 1 cut(s) 191
MalI GATC 1 cut(s) 294
MboI GATC 1 cut(s) 292
MboII GAAGA 2 cut(s) 17, 182
MflI RGATCY 1 cut(s) 292
MhlI GDGCHC 2 cut(s) 58, 444
MluCI AATT 4 cut(s) 126, 162, 174, 364
MlyI GAGTC 1 cut(s) 321
MnlI CCTC 4 cut(s) 34, 80, 326, 430
Mph1103I ATGCAT 1 cut(s) 387
MseI TTAA 4 cut(s) 17, 98, 177, 393
MwoI GCNNNNNNNGC 1 cut(s) 90
NdeI CATATG 1 cut(s) 106
NdeII GATC 1 cut(s) 292
NlaIV GGNNCC 1 cut(s) 282
NmeAIII GCCGAG 1 cut(s) 433
NsiI ATGCAT 1 cut(s) 387
PkrI GCNGC 2 cut(s) 95, 414
PleI GAGTC 1 cut(s) 320
PpsI GAGTC 1 cut(s) 320
Psp124BI GAGCTC 1 cut(s) 444
PspN4I GGNNCC 1 cut(s) 282
PspPI GGNCC 1 cut(s) 43
PsuI RGATCY 1 cut(s) 292
RsaI GTAC 3 cut(s) 113, 209, 282
RsaNI GTAC 3 cut(s) 112, 208, 281
SacI GAGCTC 1 cut(s) 444
SaqAI TTAA 4 cut(s) 17, 98, 177, 393
SatI GCNGC 2 cut(s) 94, 413
Sau3AI GATC 1 cut(s) 292
Sau96I GGNCC 1 cut(s) 43
SchI GAGTC 1 cut(s) 321
SduI GDGCHC 2 cut(s) 58, 444
SetI ASST 6 cut(s) 34, 72, 153, 309, 417, 444
SfaNI GCATC 2 cut(s) 236, 394
SinI GGWCC 1 cut(s) 43
Sse9I AATT 4 cut(s) 126, 162, 174, 364
SstI GAGCTC 1 cut(s) 444
TaqI TCGA 2 cut(s) 24, 318
TasI AATT 4 cut(s) 126, 162, 174, 364
TatI WGTACW 2 cut(s) 111, 207
Tru1I TTAA 4 cut(s) 17, 98, 177, 393
Tru9I TTAA 4 cut(s) 17, 98, 177, 393
TscAI CASTG 1 cut(s) 352
TseI GCWGC 2 cut(s) 93, 412
TspRI CASTG 1 cut(s) 352
VpaK11BI GGWCC 1 cut(s) 43
XapI RAATTY 2 cut(s) 126, 364
Zsp2I ATGCAT 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.