Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8456461.1

Orthogroup ID

OG0002339

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1444

Gene Structure 1444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8456461.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 150 bp

atggtaccaccaaaagatccctacatcaaggtcagagtcctcgatgacttgggtggagagatactactcagtgatgataagaaagcaaattttactcgccactcaatgcattttcttaaacgaactgatgccgagcagctcatctcacag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sld5

Protein Analysis

50

Amino Acids

5.77

Weight (kDa)

6.71

Isoelectric Point (pI)

43.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80190 AT1G80190 AT1G80190 AT1G80190 AT1G80190 AT1G80190
fragaria_vesca	FvH4_1g25440 FvH4_1g25440 FvH4_1g25440 FvH4_1g25440 FvH4_1g25440 FvH4_6g30230
malus_domestica	MD17G1206800.v1.1
prunus_persica	Prupe.3G081400_v2.0.a1 Prupe.3G081400_v2.0.a1 Prupe.3G081400_v2.0.a1 Prupe.3G081400_v2.0.a1 Prupe.3G081400_v2.0.a1
pyrus_communis	pycom17g20960
rosa_chinensis	RchiOBHm_Chr2g0123461 RchiOBHm_Chr2g0136471
rosa_laevigata	RLG00000018757 RLG00000019534
rosa_multiflora	Rmu_co8456461.1_g000001 Rmu_sc0001998.1_g000001 Rmu_sc0005876.1_g000002 Rmu_sc0038680.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108260 Rroxscaffold_2G00120610
rosa_rugosa	Rorug02G0246000 Rorug02G0330800 Rorug02G0330900
rosa_samantha	Rh2AG304600 Rh2AG381800 Rh2BG312700 Rh2BG388500 Rh2CG291100 Rh2CG368200 Rh2DG328600 Rh2DG405000
rosa_wichuraiana	Rw2G024410 Rw2G031210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	4
AccB1I	GGYRCC	1 cut(s)	4
AclWI	GGATC	1 cut(s)	11
AcsI	RAATTY	1 cut(s)	88
AfaI	GTAC	1 cut(s)	6
AluBI	AGCT	1 cut(s)	139
AluI	AGCT	1 cut(s)	139
AlwI	GGATC	1 cut(s)	11
ApeKI	GCWGC	1 cut(s)	136
ApoI	RAATTY	1 cut(s)	88
Asp718I	GGTACC	1 cut(s)	4
BanI	GGYRCC	1 cut(s)	4
BisI	GCNGC	1 cut(s)	137
BlsI	GCNGC	1 cut(s)	138
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	1 cut(s)	118
BseMII	CTCAG	1 cut(s)	82
BshNI	GGYRCC	1 cut(s)	4
Bsp143I	GATC	1 cut(s)	16
BspCNI	CTCAG	1 cut(s)	81
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	11
BspT107I	GGYRCC	1 cut(s)	4
BssMI	GATC	1 cut(s)	16
BstDEI	CTNAG	1 cut(s)	68
BstKTI	GATC	1 cut(s)	19
BstMBI	GATC	1 cut(s)	16
BstX2I	RGATCY	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	16
BtsIMutI	CAGTG	1 cut(s)	76
Csp6I	GTAC	1 cut(s)	5
CviJI	RGCY	1 cut(s)	139
CviKI_1	RGCY	1 cut(s)	139
CviQI	GTAC	1 cut(s)	5
DdeI	CTNAG	1 cut(s)	68
DpnI	GATC	1 cut(s)	18
DpnII	GATC	1 cut(s)	16
EcoT22I	ATGCAT	1 cut(s)	111
Fnu4HI	GCNGC	1 cut(s)	137
Fsp4HI	GCNGC	1 cut(s)	137
GluI	GCNGC	1 cut(s)	137
HinfI	GANTC	1 cut(s)	36
Hpy188I	TCNGA	1 cut(s)	35
HpyCH4V	TGCA	1 cut(s)	109
HpyF3I	CTNAG	1 cut(s)	68
KpnI	GGTACC	1 cut(s)	8
Kzo9I	GATC	1 cut(s)	16
LweI	GCATC	1 cut(s)	118
MalI	GATC	1 cut(s)	18
MboI	GATC	1 cut(s)	16
MflI	RGATCY	1 cut(s)	16
MluCI	AATT	1 cut(s)	88
MlyI	GAGTC	1 cut(s)	45
MnlI	CCTC	1 cut(s)	50
Mph1103I	ATGCAT	1 cut(s)	111
MseI	TTAA	1 cut(s)	117
NdeII	GATC	1 cut(s)	16
NlaIV	GGNNCC	1 cut(s)	6
NsiI	ATGCAT	1 cut(s)	111
PkrI	GCNGC	1 cut(s)	138
PleI	GAGTC	1 cut(s)	44
PpsI	GAGTC	1 cut(s)	44
PspN4I	GGNNCC	1 cut(s)	6
PsuI	RGATCY	1 cut(s)	16
RsaI	GTAC	1 cut(s)	6
RsaNI	GTAC	1 cut(s)	5
SaqAI	TTAA	1 cut(s)	117
SatI	GCNGC	1 cut(s)	137
Sau3AI	GATC	1 cut(s)	16
SchI	GAGTC	1 cut(s)	45
SetI	ASST	2 cut(s)	33, 141
SfaNI	GCATC	1 cut(s)	118
SgeI	CNNG	5 cut(s)	40, 53, 61, 108, 145
Sse9I	AATT	1 cut(s)	88
TaqI	TCGA	1 cut(s)	42
TasI	AATT	1 cut(s)	88
Tru1I	TTAA	1 cut(s)	117
Tru9I	TTAA	1 cut(s)	117
TscAI	CASTG	1 cut(s)	76
TseI	GCWGC	1 cut(s)	136
TspRI	CASTG	1 cut(s)	76
XapI	RAATTY	1 cut(s)	88
Zsp2I	ATGCAT	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.