Rh2CG368200

DNA replication complex GINS protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0002339
Physical Location & Seq
Forward (+)
50062213 .. 50065365
3153 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG368200.1

Sequence Viewer

Length: 255 bp
ATGTCTCCGTACTTCATTAGTGAAAACGATGAGTCCTTGTTGTTTAAGATCATCGTGCTAATTTGTGTTTGCCAGGATATGGTGCCGCCGAAAGATCCCTACATCAAGGTGAGAGTTCTTGATGACATGGGTGGAGAGATACTACTCAGCGATGACAAGAAAGCAAATTTTACTCGTCACTCGATGCATTTTCTTAAACGAACTGATGCCGAACAGCTCATCTCACAGGGCAAGATGGAGGAGCTCAAAGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sld5

Protein Analysis

84

Amino Acids

9.72

Weight (kDa)

5.06

Isoelectric Point (pI)

47.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PSF1_C PF24997 31 - 83 2.8e-30 PSF1 C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 82
AccB7I CCANNNNNTGG 1 cut(s) 79
AciI CCGC 1 cut(s) 86
AclWI GGATC 1 cut(s) 89
AcsI RAATTY 1 cut(s) 166
AfaI GTAC 1 cut(s) 11
AfiI CCNNNNNNNGG 1 cut(s) 79
AjnI CCWGG 1 cut(s) 72
AluBI AGCT 2 cut(s) 217, 244
AluI AGCT 2 cut(s) 217, 244
Alw21I GWGCWC 1 cut(s) 246
Alw26I GTCTC 1 cut(s) 9
AlwI GGATC 1 cut(s) 89
ApoI RAATTY 1 cut(s) 166
AsuHPI GGTGA 1 cut(s) 121
BanI GGYRCC 1 cut(s) 82
BanII GRGCYC 1 cut(s) 246
Bbv12I GWGCWC 1 cut(s) 246
BccI CCATC 1 cut(s) 229
BciT130I CCWGG 1 cut(s) 74
BcoDI GTCTC 1 cut(s) 9
BisI GCNGC 1 cut(s) 86
BlsI GCNGC 1 cut(s) 87
Bme1390I CCNGG 1 cut(s) 74
BmiI GGNNCC 1 cut(s) 84
BmrFI CCNGG 1 cut(s) 74
BmsI GCATC 2 cut(s) 174, 196
Bsc4I CCNNNNNNNGG 1 cut(s) 79
BseBI CCWGG 1 cut(s) 74
BseLI CCNNNNNNNGG 1 cut(s) 79
BseMII CTCAG 1 cut(s) 160
BseRI GAGGAG 1 cut(s) 254
BshNI GGYRCC 1 cut(s) 82
BsiHKAI GWGCWC 1 cut(s) 246
BslI CCNNNNNNNGG 1 cut(s) 79
BsmAI GTCTC 1 cut(s) 9
Bsp1286I GDGCHC 1 cut(s) 246
Bsp143I GATC 2 cut(s) 48, 94
BspACI CCGC 1 cut(s) 86
BspCNI CTCAG 1 cut(s) 159
BspLI GGNNCC 1 cut(s) 84
BspPI GGATC 1 cut(s) 89
BspT107I GGYRCC 1 cut(s) 82
BssMI GATC 2 cut(s) 48, 94
Bst2UI CCWGG 1 cut(s) 74
BstDEI CTNAG 1 cut(s) 146
BstKTI GATC 2 cut(s) 51, 97
BstMAI GTCTC 1 cut(s) 9
BstMBI GATC 2 cut(s) 48, 94
BstNI CCWGG 1 cut(s) 74
BstSCI CCNGG 1 cut(s) 72
BstX2I RGATCY 1 cut(s) 94
BstYI RGATCY 1 cut(s) 94
BtgZI GCGATG 1 cut(s) 165
Csp6I GTAC 1 cut(s) 10
CviAII CATG 1 cut(s) 127
CviJI RGCY 2 cut(s) 217, 244
CviKI_1 RGCY 2 cut(s) 217, 244
CviQI GTAC 1 cut(s) 10
DdeI CTNAG 1 cut(s) 146
DpnI GATC 2 cut(s) 50, 96
DpnII GATC 2 cut(s) 48, 94
Ecl136II GAGCTC 1 cut(s) 244
Eco24I GRGCYC 1 cut(s) 246
Eco53kI GAGCTC 1 cut(s) 244
EcoICRI GAGCTC 1 cut(s) 244
EcoRII CCWGG 1 cut(s) 72
EcoT22I ATGCAT 1 cut(s) 189
EcoT38I GRGCYC 1 cut(s) 246
FaeI CATG 1 cut(s) 130
FaiI YATR 2 cut(s) 80, 128
FatI CATG 1 cut(s) 126
Fnu4HI GCNGC 1 cut(s) 86
FriOI GRGCYC 1 cut(s) 246
Fsp4HI GCNGC 1 cut(s) 86
GluI GCNGC 1 cut(s) 86
Hin1II CATG 1 cut(s) 130
HinfI GANTC 1 cut(s) 32
HphI GGTGA 1 cut(s) 121
Hpy188III TCNNGA 1 cut(s) 119
HpyCH4V TGCA 1 cut(s) 187
HpyF3I CTNAG 1 cut(s) 146
Hsp92II CATG 1 cut(s) 130
Kzo9I GATC 2 cut(s) 48, 94
LmnI GCTCC 1 cut(s) 241
LpnPI CCDG 3 cut(s) 59, 86, 212
LweI GCATC 2 cut(s) 174, 196
MaeIII GTNAC 1 cut(s) 176
MalI GATC 2 cut(s) 50, 96
MboI GATC 2 cut(s) 48, 94
MflI RGATCY 1 cut(s) 94
MhlI GDGCHC 1 cut(s) 246
MluCI AATT 2 cut(s) 60, 166
MlyI GAGTC 1 cut(s) 41
MnlI CCTC 1 cut(s) 232
Mph1103I ATGCAT 1 cut(s) 189
MseI TTAA 2 cut(s) 45, 195
MslI CAYNNNNRTG 1 cut(s) 107
MspR9I CCNGG 1 cut(s) 74
MvaI CCWGG 1 cut(s) 74
NdeII GATC 2 cut(s) 48, 94
NlaIII CATG 1 cut(s) 130
NlaIV GGNNCC 1 cut(s) 84
NmuCI GTSAC 1 cut(s) 176
NsiI ATGCAT 1 cut(s) 189
PflMI CCANNNNNTGG 1 cut(s) 79
PkrI GCNGC 1 cut(s) 87
PleI GAGTC 1 cut(s) 40
PpsI GAGTC 1 cut(s) 40
Psp124BI GAGCTC 1 cut(s) 246
Psp6I CCWGG 1 cut(s) 72
PspGI CCWGG 1 cut(s) 72
PspN4I GGNNCC 1 cut(s) 84
PsuI RGATCY 1 cut(s) 94
RsaI GTAC 1 cut(s) 11
RsaNI GTAC 1 cut(s) 10
RseI CAYNNNNRTG 1 cut(s) 107
SacI GAGCTC 1 cut(s) 246
SaqAI TTAA 2 cut(s) 45, 195
SatI GCNGC 1 cut(s) 86
Sau3AI GATC 2 cut(s) 48, 94
SchI GAGTC 1 cut(s) 41
ScrFI CCNGG 1 cut(s) 74
SduI GDGCHC 1 cut(s) 246
SetI ASST 3 cut(s) 111, 219, 246
SfaNI GCATC 2 cut(s) 174, 196
SmiMI CAYNNNNRTG 1 cut(s) 107
Sse9I AATT 2 cut(s) 60, 166
SsiI CCGC 1 cut(s) 86
SstI GAGCTC 1 cut(s) 246
StyD4I CCNGG 1 cut(s) 72
TaqI TCGA 1 cut(s) 182
TasI AATT 2 cut(s) 60, 166
TauI GCSGC 1 cut(s) 88
Tru1I TTAA 2 cut(s) 45, 195
Tru9I TTAA 2 cut(s) 45, 195
TseFI GTSAC 1 cut(s) 176
Tsp45I GTSAC 1 cut(s) 176
TspDTI ATGAA 1 cut(s) 4
Van91I CCANNNNNTGG 1 cut(s) 79
XapI RAATTY 1 cut(s) 166
Zsp2I ATGCAT 1 cut(s) 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.