Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002339

Physical Location & Seq

Genomic Coordinates Reverse (-)

40860635 .. 40861270

Gene Structure 636 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0330900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGGCAGCGGTCCAGCGGCTCAGGCGGCGCTTTACAGTTGGTGGTCTGTCGCTGGTGGCAGTGGTGGGATTGGGCCAAGCTTGGATGGCATCATGGATCTCCCTTGTTTCCTTGGTAGAGGCTTGGGCCCTTCGTTTGGGTCCGGCCTGGGTTGTGATGTCTCGCCTTCGGCGTGGAATAAGTCCCTACATCTATTTTGTAGGACTAGTCGGGCTAAATGCCTGTGCGTGCACTCTAAGTGCCTTGTCTGGCCTAGTGAGGCGACGATCAATTAAATGGTCTCAACCTCCTAGTGGCAGAATGAAACTAAGTGTCGTCGGAATTATTTTCCGGCGGCAATATAGTGGGAAAGCTGAGATTTTAGTAATTATGCTTCGTTGTAATCGAGTTATCTTTCCGGTATGTCACCACTCTGTCAAAGCAAATGGAGTAGCCAGTAGTGCACTCTTTGCTAATTGGTGCTTGTTAGAATACATGTCTTTTGTAGAGACTCCTGATATTATTTCGGGATGTTCTCTAGATGCTTATTGTAATAAGGGGTTTAGGCTCAACGTCCCCCCCCTGTATTCAATTTCATCAATCAAAGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sld5

Protein Analysis

196

Amino Acids

21.58

Weight (kDa)

10.44

Isoelectric Point (pI)

61.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80190 AT1G80190 AT1G80190 AT1G80190 AT1G80190 AT1G80190
fragaria_vesca	FvH4_1g25440 FvH4_1g25440 FvH4_1g25440 FvH4_1g25440 FvH4_1g25440 FvH4_6g30230
malus_domestica	MD17G1206800.v1.1
prunus_persica	Prupe.3G081400_v2.0.a1 Prupe.3G081400_v2.0.a1 Prupe.3G081400_v2.0.a1 Prupe.3G081400_v2.0.a1 Prupe.3G081400_v2.0.a1
pyrus_communis	pycom17g20960
rosa_chinensis	RchiOBHm_Chr2g0123461 RchiOBHm_Chr2g0136471
rosa_laevigata	RLG00000018757 RLG00000019534
rosa_multiflora	Rmu_co8456461.1_g000001 Rmu_sc0001998.1_g000001 Rmu_sc0005876.1_g000002 Rmu_sc0038680.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108260 Rroxscaffold_2G00120610
rosa_rugosa	Rorug02G0246000 Rorug02G0330800 Rorug02G0330900
rosa_samantha	Rh2AG304600 Rh2AG381800 Rh2BG312700 Rh2BG388500 Rh2CG291100 Rh2CG368200 Rh2DG328600 Rh2DG405000
rosa_wichuraiana	Rw2G024410 Rw2G031210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	8, 16, 25, 334
AclWI	GGATC	1 cut(s)	104
AfiI	CCNNNNNNNGG	2 cut(s)	136, 293
AflIII	ACRYGT	1 cut(s)	474
AgsI	TTSAA	1 cut(s)	570
AhlI	ACTAGT	1 cut(s)	205
AjnI	CCWGG	1 cut(s)	146
AluBI	AGCT	3 cut(s)	80, 353, 587
AluI	AGCT	3 cut(s)	80, 353, 587
Alw21I	GWGCWC	2 cut(s)	233, 445
Alw26I	GTCTC	3 cut(s)	165, 285, 482
Alw44I	GTGCAC	2 cut(s)	229, 441
AlwI	GGATC	1 cut(s)	104
AoxI	GGCC	4 cut(s)	73, 126, 144, 250
ApaI	GGGCCC	1 cut(s)	130
ApaLI	GTGCAC	2 cut(s)	229, 441
ApeKI	GCWGC	1 cut(s)	5
AspLEI	GCGC	1 cut(s)	30
AspS9I	GGNCC	5 cut(s)	10, 73, 126, 127, 140
AsuHPI	GGTGA	1 cut(s)	398
AvaII	GGWCC	2 cut(s)	10, 140
BaeGI	GKGCMC	3 cut(s)	130, 233, 445
BanII	GRGCYC	1 cut(s)	130
BarI	GAAGNNNNNNTAC	2 cut(s)	357, 389
Bbv12I	GWGCWC	2 cut(s)	233, 445
BbvI	GCAGC	1 cut(s)	17
BccI	CCATC	1 cut(s)	79
BciT130I	CCWGG	1 cut(s)	148
BcoDI	GTCTC	3 cut(s)	165, 285, 482
BcuI	ACTAGT	1 cut(s)	205
BfaI	CTAG	4 cut(s)	206, 254, 291, 518
BfoI	RGCGCY	1 cut(s)	31
BisI	GCNGC	4 cut(s)	6, 17, 26, 335
BlsI	GCNGC	4 cut(s)	7, 18, 27, 336
Bme1390I	CCNGG	1 cut(s)	148
Bme18I	GGWCC	2 cut(s)	10, 140
BmgT120I	GGNCC	5 cut(s)	10, 73, 126, 127, 140
BmiI	GGNNCC	2 cut(s)	128, 141
BmrFI	CCNGG	1 cut(s)	148
BmsI	GCATC	2 cut(s)	98, 511
Bpu10I	CCTNAGC	1 cut(s)	20
BsaI	GGTCTC	1 cut(s)	285
BsaJI	CCNNGG	2 cut(s)	111, 147
BsaWI	WCCGGW	1 cut(s)	397
Bsc4I	CCNNNNNNNGG	2 cut(s)	136, 293
Bse1I	ACTGG	1 cut(s)	435
BseBI	CCWGG	1 cut(s)	148
BseDI	CCNNGG	2 cut(s)	111, 147
BseGI	GGATG	2 cut(s)	90, 515
BseLI	CCNNNNNNNGG	2 cut(s)	136, 293
BseMII	CTCAG	2 cut(s)	34, 345
BseNI	ACTGG	1 cut(s)	435
BseSI	GKGCMC	3 cut(s)	130, 233, 445
BseXI	GCAGC	1 cut(s)	17
BshFI	GGCC	4 cut(s)	75, 128, 146, 252
BsiHKAI	GWGCWC	2 cut(s)	233, 445
BsiSI	CCGG	3 cut(s)	143, 331, 398
BslFI	GGGAC	2 cut(s)	168, 539
BslI	CCNNNNNNNGG	2 cut(s)	136, 293
BsmAI	GTCTC	3 cut(s)	165, 285, 482
BsmFI	GGGAC	2 cut(s)	168, 539
BsnI	GGCC	4 cut(s)	75, 128, 146, 252
Bso31I	GGTCTC	1 cut(s)	285
Bsp120I	GGGCCC	1 cut(s)	126
Bsp1286I	GDGCHC	3 cut(s)	130, 233, 445
Bsp143I	GATC	2 cut(s)	96, 266
BspACI	CCGC	4 cut(s)	8, 16, 25, 334
BspANI	GGCC	4 cut(s)	75, 128, 146, 252
BspCNI	CTCAG	2 cut(s)	33, 346
BspLI	GGNNCC	2 cut(s)	128, 141
BspPI	GGATC	1 cut(s)	104
BspTNI	GGTCTC	1 cut(s)	285
BsrI	ACTGG	1 cut(s)	435
BssECI	CCNNGG	2 cut(s)	111, 147
BssMI	GATC	2 cut(s)	96, 266
BssT1I	CCWWGG	1 cut(s)	111
Bst2UI	CCWGG	1 cut(s)	148
Bst4CI	ACNGT	1 cut(s)	37
BstAPI	GCANNNNNTGC	1 cut(s)	449
BstC8I	GCNNGC	1 cut(s)	229
BstDEI	CTNAG	4 cut(s)	20, 236, 308, 354
BstF5I	GGATG	2 cut(s)	90, 515
BstH2I	RGCGCY	1 cut(s)	31
BstHHI	GCGC	1 cut(s)	30
BstKTI	GATC	2 cut(s)	99, 269
BstMAI	GTCTC	3 cut(s)	165, 285, 482
BstMBI	GATC	2 cut(s)	96, 266
BstMWI	GCNNNNNNNGC	5 cut(s)	22, 25, 86, 440, 449
BstNI	CCWGG	1 cut(s)	148
BstNSI	RCATGY	1 cut(s)	478
BstSCI	CCNGG	1 cut(s)	146
BstSLI	GKGCMC	3 cut(s)	130, 233, 445
BstV1I	GCAGC	1 cut(s)	17
BstX2I	RGATCY	1 cut(s)	96
BstYI	RGATCY	1 cut(s)	96
BsuRI	GGCC	4 cut(s)	75, 128, 146, 252
BtsCI	GGATG	2 cut(s)	90, 515
BtsI	GCAGTG	1 cut(s)	66
BtsIMutI	CAGTG	1 cut(s)	66
Cac8I	GCNNGC	1 cut(s)	229
CfoI	GCGC	1 cut(s)	30
Cfr13I	GGNCC	5 cut(s)	10, 73, 126, 127, 140
CviAII	CATG	2 cut(s)	93, 475
DdeI	CTNAG	4 cut(s)	20, 236, 308, 354
DpnI	GATC	2 cut(s)	98, 268
DpnII	GATC	2 cut(s)	96, 266
Eco130I	CCWWGG	1 cut(s)	111
Eco24I	GRGCYC	1 cut(s)	130
Eco31I	GGTCTC	1 cut(s)	285
Eco47I	GGWCC	2 cut(s)	10, 140
EcoO109I	RGGNCCY	1 cut(s)	127
EcoRII	CCWGG	1 cut(s)	146
EcoT14I	CCWWGG	1 cut(s)	111
EcoT38I	GRGCYC	1 cut(s)	130
ErhI	CCWWGG	1 cut(s)	111
FaeI	CATG	2 cut(s)	96, 478
FaiI	YATR	5 cut(s)	94, 342, 371, 403, 476
FaqI	GGGAC	2 cut(s)	168, 539
FatI	CATG	2 cut(s)	92, 474
Fnu4HI	GCNGC	4 cut(s)	6, 17, 26, 335
FokI	GGATG	2 cut(s)	97, 522
FriOI	GRGCYC	1 cut(s)	130
Fsp4HI	GCNGC	4 cut(s)	6, 17, 26, 335
FspBI	CTAG	4 cut(s)	206, 254, 291, 518
GlaI	GCGC	1 cut(s)	29
GluI	GCNGC	4 cut(s)	6, 17, 26, 335
HaeII	RGCGCY	1 cut(s)	31
HaeIII	GGCC	4 cut(s)	75, 128, 146, 252
HapII	CCGG	3 cut(s)	143, 331, 398
HhaI	GCGC	1 cut(s)	30
Hin1II	CATG	2 cut(s)	96, 478
Hin6I	GCGC	1 cut(s)	28
HinP1I	GCGC	1 cut(s)	28
HindIII	AAGCTT	2 cut(s)	78, 585
HinfI	GANTC	1 cut(s)	490
HpaII	CCGG	3 cut(s)	143, 331, 398
HphI	GGTGA	1 cut(s)	398
Hpy166II	GTNNAC	2 cut(s)	231, 443
Hpy188I	TCNGA	1 cut(s)	320
Hpy188III	TCNNGA	3 cut(s)	494, 507, 518
Hpy8I	GTNNAC	2 cut(s)	231, 443
Hpy99I	CGWCG	2 cut(s)	267, 320
HpyAV	CCTTC	2 cut(s)	140, 176
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4IV	ACGT	1 cut(s)	552
HpyCH4V	TGCA	2 cut(s)	231, 443
HpyF10VI	GCNNNNNNNGC	5 cut(s)	22, 25, 86, 440, 449
HpyF3I	CTNAG	4 cut(s)	20, 236, 308, 354
HpySE526I	ACGT	1 cut(s)	552
Hsp92II	CATG	2 cut(s)	96, 478
HspAI	GCGC	1 cut(s)	28
Kzo9I	GATC	2 cut(s)	96, 266
Lsp1109I	GCAGC	1 cut(s)	17
LweI	GCATC	2 cut(s)	98, 511
MaeI	CTAG	4 cut(s)	206, 254, 291, 518
MaeII	ACGT	1 cut(s)	552
MaeIII	GTNAC	1 cut(s)	404
MalI	GATC	2 cut(s)	98, 268
MboI	GATC	2 cut(s)	96, 266
MflI	RGATCY	1 cut(s)	96
MhlI	GDGCHC	3 cut(s)	130, 233, 445
MluCI	AATT	5 cut(s)	270, 321, 366, 454, 570
MlyI	GAGTC	1 cut(s)	484
MmeI	TCCRAC	1 cut(s)	298
MnlI	CCTC	3 cut(s)	112, 252, 297
MseI	TTAA	1 cut(s)	273
MspA1I	CMGCKG	2 cut(s)	8, 16
MspI	CCGG	3 cut(s)	143, 331, 398
MspR9I	CCNGG	1 cut(s)	148
MvaI	CCWGG	1 cut(s)	148
MwoI	GCNNNNNNNGC	5 cut(s)	22, 25, 86, 440, 449
NdeII	GATC	2 cut(s)	96, 266
NlaIII	CATG	2 cut(s)	96, 478
NlaIV	GGNNCC	2 cut(s)	128, 141
NmuCI	GTSAC	1 cut(s)	404
NspI	RCATGY	1 cut(s)	478
PciI	ACATGT	1 cut(s)	474
PcsI	WCGNNNNNNNCGW	2 cut(s)	169, 382
PkrI	GCNGC	4 cut(s)	7, 18, 27, 336
PleI	GAGTC	1 cut(s)	484
PpsI	GAGTC	1 cut(s)	484
PscI	ACATGT	1 cut(s)	474
Psp6I	CCWGG	1 cut(s)	146
PspGI	CCWGG	1 cut(s)	146
PspN4I	GGNNCC	2 cut(s)	128, 141
PspOMI	GGGCCC	1 cut(s)	126
PspPI	GGNCC	5 cut(s)	10, 73, 126, 127, 140
PsuI	RGATCY	1 cut(s)	96
SaqAI	TTAA	1 cut(s)	273
SatI	GCNGC	4 cut(s)	6, 17, 26, 335
Sau3AI	GATC	2 cut(s)	96, 266
Sau96I	GGNCC	5 cut(s)	10, 73, 126, 127, 140
SchI	GAGTC	1 cut(s)	484
ScrFI	CCNGG	1 cut(s)	148
SduI	GDGCHC	3 cut(s)	130, 233, 445
SetI	ASST	5 cut(s)	82, 289, 355, 555, 589
SfaNI	GCATC	2 cut(s)	98, 511
SinI	GGWCC	2 cut(s)	10, 140
SpeI	ACTAGT	1 cut(s)	205
Sse9I	AATT	5 cut(s)	270, 321, 366, 454, 570
SsiI	CCGC	4 cut(s)	8, 16, 25, 334
SspMI	CTAG	4 cut(s)	206, 254, 291, 518
StyD4I	CCNGG	1 cut(s)	146
StyI	CCWWGG	1 cut(s)	111
TaaI	ACNGT	1 cut(s)	37
TaiI	ACGT	1 cut(s)	555
TaqI	TCGA	1 cut(s)	385
TasI	AATT	5 cut(s)	270, 321, 366, 454, 570
TauI	GCSGC	3 cut(s)	19, 28, 337
Tru1I	TTAA	1 cut(s)	273
Tru9I	TTAA	1 cut(s)	273
TscAI	CASTG	1 cut(s)	66
TseFI	GTSAC	1 cut(s)	404
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	1 cut(s)	404
TspDTI	ATGAA	2 cut(s)	317, 564
TspRI	CASTG	1 cut(s)	66
VneI	GTGCAC	2 cut(s)	229, 441
VpaK11BI	GGWCC	2 cut(s)	10, 140
XbaI	TCTAGA	1 cut(s)	517
XceI	RCATGY	1 cut(s)	478
XspI	CTAG	4 cut(s)	206, 254, 291, 518

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.