Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002339

Physical Location & Seq

Genomic Coordinates Reverse (-)

19385791 .. 19388051

Gene Structure 2261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g20960.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGTATGGGACAAATGCCATCCAACTGGTCAAAGAAATTGCAAATGGTGAAAAGGGGCAGCTCACGGCTTTCAGTAGTAATCTGTTCAAGGATGTAATTGCAGAATGTAGTCAACATTATGAAGATCTTCAAAAGTCGTTAAGGAAAATGCAGGAAGCAGGAATAGATTTCCAAACTCAAAATGAGGACCACTATGGTTTCCTTATCCACCACCTTTCTTTACTTCGCAATAAACGCTGCTTAATGACTTACATGCACAGCCGAGCAGAAATGTTACGGAATCTCATATGGAAGGTGGGCTATGAAATTCCAGAAGAAATTGAAGAGAAGCTTAGTCACACAGAGAAAGAGTACTTTAAGAAACATTCAGAAGCTTTAAGATCATACATGTCGAGAGTGGAACTCCATTTGGATATGGGTGCCCCCGAAGGACCCCTACATCAAGGTGAGAGTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sld5

Protein Analysis

153

Amino Acids

17.71

Weight (kDa)

5.98

Isoelectric Point (pI)

68.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80190 AT1G80190 AT1G80190 AT1G80190 AT1G80190 AT1G80190
fragaria_vesca	FvH4_1g25440 FvH4_1g25440 FvH4_1g25440 FvH4_1g25440 FvH4_1g25440 FvH4_6g30230
malus_domestica	MD17G1206800.v1.1
prunus_persica	Prupe.3G081400_v2.0.a1 Prupe.3G081400_v2.0.a1 Prupe.3G081400_v2.0.a1 Prupe.3G081400_v2.0.a1 Prupe.3G081400_v2.0.a1
pyrus_communis	pycom17g20960
rosa_chinensis	RchiOBHm_Chr2g0123461 RchiOBHm_Chr2g0136471
rosa_laevigata	RLG00000018757 RLG00000019534
rosa_multiflora	Rmu_co8456461.1_g000001 Rmu_sc0001998.1_g000001 Rmu_sc0005876.1_g000002 Rmu_sc0038680.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108260 Rroxscaffold_2G00120610
rosa_rugosa	Rorug02G0246000 Rorug02G0330800 Rorug02G0330900
rosa_samantha	Rh2AG304600 Rh2AG381800 Rh2BG312700 Rh2BG388500 Rh2CG291100 Rh2CG368200 Rh2DG328600 Rh2DG405000
rosa_wichuraiana	Rw2G024410 Rw2G031210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	419
AcsI	RAATTY	1 cut(s)	306
AfaI	GTAC	1 cut(s)	353
AflIII	ACRYGT	1 cut(s)	387
AgsI	TTSAA	3 cut(s)	88, 131, 323
AluBI	AGCT	3 cut(s)	61, 331, 374
AluI	AGCT	3 cut(s)	61, 331, 374
ApeKI	GCWGC	2 cut(s)	58, 237
ApoI	RAATTY	1 cut(s)	306
Asp700I	GAANNNNTTC	1 cut(s)	126
AspS9I	GGNCC	2 cut(s)	187, 431
AsuHPI	GGTGA	2 cut(s)	59, 458
AvaII	GGWCC	2 cut(s)	187, 431
BaeGI	GKGCMC	1 cut(s)	424
BanI	GGYRCC	1 cut(s)	419
BarI	GAAGNNNNNNTAC	2 cut(s)	420, 452
BbvI	GCAGC	2 cut(s)	70, 224
BccI	CCATC	1 cut(s)	26
BceAI	ACGGC	1 cut(s)	81
BglII	AGATCT	1 cut(s)	124
BisI	GCNGC	2 cut(s)	59, 238
BlsI	GCNGC	2 cut(s)	60, 239
BmcAI	AGTACT	1 cut(s)	353
Bme18I	GGWCC	2 cut(s)	187, 431
BmgT120I	GGNCC	2 cut(s)	187, 431
BmiI	GGNNCC	2 cut(s)	421, 433
BplI	GAGNNNNNCTC	2 cut(s)	387, 419
Bse1I	ACTGG	1 cut(s)	30
BseGI	GGATG	2 cut(s)	18, 97
BseNI	ACTGG	1 cut(s)	30
BseSI	GKGCMC	1 cut(s)	424
BseXI	GCAGC	2 cut(s)	70, 224
BshNI	GGYRCC	1 cut(s)	419
BslFI	GGGAC	1 cut(s)	22
BsmFI	GGGAC	1 cut(s)	22
Bsp1286I	GDGCHC	1 cut(s)	424
Bsp143I	GATC	2 cut(s)	124, 380
BspLI	GGNNCC	2 cut(s)	421, 433
BspT107I	GGYRCC	1 cut(s)	419
BsrI	ACTGG	1 cut(s)	30
BssMI	GATC	2 cut(s)	124, 380
Bst6I	CTCTTC	1 cut(s)	318
BstDEI	CTNAG	1 cut(s)	332
BstF5I	GGATG	2 cut(s)	18, 97
BstKTI	GATC	2 cut(s)	127, 383
BstMBI	GATC	2 cut(s)	124, 380
BstMWI	GCNNNNNNNGC	1 cut(s)	234
BstNSI	RCATGY	2 cut(s)	256, 391
BstSLI	GKGCMC	1 cut(s)	424
BstV1I	GCAGC	2 cut(s)	70, 224
BstX2I	RGATCY	1 cut(s)	124
BstXI	CCANNNNNNTGG	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	124
BtsCI	GGATG	2 cut(s)	18, 97
Cfr13I	GGNCC	2 cut(s)	187, 431
Csp6I	GTAC	1 cut(s)	352
CviAII	CATG	2 cut(s)	253, 388
CviJI	RGCY	6 cut(s)	61, 68, 261, 300, 331, 374
CviKI_1	RGCY	6 cut(s)	61, 68, 261, 300, 331, 374
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	1 cut(s)	332
DpnI	GATC	2 cut(s)	126, 382
DpnII	GATC	2 cut(s)	124, 380
Eam1104I	CTCTTC	1 cut(s)	318
EarI	CTCTTC	1 cut(s)	318
Eco47I	GGWCC	2 cut(s)	187, 431
EcoO109I	RGGNCCY	1 cut(s)	431
FaeI	CATG	2 cut(s)	256, 391
FalI	AAGNNNNNCTT	2 cut(s)	315, 347
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	2 cut(s)	252, 387
FauNDI	CATATG	1 cut(s)	287
Fnu4HI	GCNGC	2 cut(s)	59, 238
FokI	GGATG	2 cut(s)	5, 104
Fsp4HI	GCNGC	2 cut(s)	59, 238
GluI	GCNGC	2 cut(s)	59, 238
Hin1II	CATG	2 cut(s)	256, 391
HincII	GTYRAC	1 cut(s)	113
HindII	GTYRAC	1 cut(s)	113
HindIII	AAGCTT	2 cut(s)	329, 372
HinfI	GANTC	2 cut(s)	280, 451
HphI	GGTGA	2 cut(s)	59, 458
Hpy166II	GTNNAC	1 cut(s)	113
Hpy188I	TCNGA	1 cut(s)	370
Hpy188III	TCNNGA	2 cut(s)	311, 393
Hpy8I	GTNNAC	1 cut(s)	113
HpyAV	CCTTC	2 cut(s)	286, 422
HpyCH4V	TGCA	4 cut(s)	41, 101, 151, 256
HpyF10VI	GCNNNNNNNGC	1 cut(s)	234
HpyF3I	CTNAG	1 cut(s)	332
Hsp92II	CATG	2 cut(s)	256, 391
Kzo9I	GATC	2 cut(s)	124, 380
LpnPI	CCDG	4 cut(s)	11, 137, 144, 324
Lsp1109I	GCAGC	2 cut(s)	70, 224
MaeIII	GTNAC	2 cut(s)	273, 335
MalI	GATC	2 cut(s)	126, 382
MboI	GATC	2 cut(s)	124, 380
MboII	GAAGA	4 cut(s)	119, 134, 326, 335
MflI	RGATCY	1 cut(s)	124
MhlI	GDGCHC	1 cut(s)	424
MluCI	AATT	4 cut(s)	36, 96, 306, 318
MmeI	TCCRAC	1 cut(s)	46
MnlI	CCTC	1 cut(s)	178
MroXI	GAANNNNTTC	1 cut(s)	126
MseI	TTAA	4 cut(s)	140, 242, 357, 377
MslI	CAYNNNNRTG	1 cut(s)	444
MwoI	GCNNNNNNNGC	1 cut(s)	234
NdeI	CATATG	1 cut(s)	287
NdeII	GATC	2 cut(s)	124, 380
NlaIII	CATG	2 cut(s)	256, 391
NlaIV	GGNNCC	2 cut(s)	421, 433
NmeAIII	GCCGAG	1 cut(s)	287
NmuCI	GTSAC	1 cut(s)	335
NspI	RCATGY	2 cut(s)	256, 391
PciI	ACATGT	1 cut(s)	387
PdmI	GAANNNNTTC	1 cut(s)	126
PfeI	GAWTC	1 cut(s)	280
PkrI	GCNGC	2 cut(s)	60, 239
PpuMI	RGGWCCY	1 cut(s)	431
PscI	ACATGT	1 cut(s)	387
Psp5II	RGGWCCY	1 cut(s)	431
PspN4I	GGNNCC	2 cut(s)	421, 433
PspPI	GGNCC	2 cut(s)	187, 431
PspPPI	RGGWCCY	1 cut(s)	431
PsuI	RGATCY	1 cut(s)	124
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
RseI	CAYNNNNRTG	1 cut(s)	444
SaqAI	TTAA	4 cut(s)	140, 242, 357, 377
SatI	GCNGC	2 cut(s)	59, 238
Sau3AI	GATC	2 cut(s)	124, 380
Sau96I	GGNCC	2 cut(s)	187, 431
ScaI	AGTACT	1 cut(s)	353
SduI	GDGCHC	1 cut(s)	424
SetI	ASST	6 cut(s)	63, 216, 297, 333, 376, 448
SinI	GGWCC	2 cut(s)	187, 431
SmiMI	CAYNNNNRTG	1 cut(s)	444
Sse9I	AATT	4 cut(s)	36, 96, 306, 318
TaqI	TCGA	1 cut(s)	392
TasI	AATT	4 cut(s)	36, 96, 306, 318
TatI	WGTACW	1 cut(s)	351
TfiI	GAWTC	1 cut(s)	280
Tru1I	TTAA	4 cut(s)	140, 242, 357, 377
Tru9I	TTAA	4 cut(s)	140, 242, 357, 377
TseFI	GTSAC	1 cut(s)	335
TseI	GCWGC	2 cut(s)	58, 237
Tsp45I	GTSAC	1 cut(s)	335
TspDTI	ATGAA	2 cut(s)	135, 318
TspGWI	ACGGA	1 cut(s)	292
VpaK11BI	GGWCC	2 cut(s)	187, 431
XapI	RAATTY	1 cut(s)	306
XceI	RCATGY	2 cut(s)	256, 391
XmnI	GAANNNNTTC	1 cut(s)	126
ZrmI	AGTACT	1 cut(s)	353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.