Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002339

Physical Location & Seq

Genomic Coordinates Reverse (-)

6043244 .. 6046232

Gene Structure 2989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G081400.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGATGTATGGAACAAAAGCCATCCAACTGGTCAAAGAAATTGCAAATGGCGAAAAGGGGCAGCTCACGCCTTTCAGTAGTGATGTATTTAGTGAAGTAATTGCAGAATGTAGTCAACACTTTGCTGACCTTCGATCCTTGATAAGGAAAATGCAGGAAGCAGGATTAGATGTTGAAACAAGTAAGAATGAGGACCACTATGGGCAACTCATTCACCACCTTTCTTTAGTTCGCAATAAACGCTGCTTGATGGCATATATGTACAACCGAGCAGAAATTTTACGAAATCTGGTATGGAAGGTCGGGTCTGAAATTCCAGAAGAAATTCAAGAGAAGCTTAGTCACTCAGAGAAAGAGTACTTTAAGAAACATTCAGAAGCTTTAAAATCATATATGTCGAGAGTGGTTCTTGAGTTGGCAGTGGATATGGTGCCCCCAAAAGATCCCTACATCAAGGTGAGAGTACTCGACGACATGGGTGAAGTAGAATTACCAAGCGATAATACAGCCAATTTTGCTCGTCACTCTATGCATTTTCTTAAACGAACTGATGCTGAGAAATATATTTCACTGGGCAAGATGGAGGAGCTCACAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sld5

Protein Analysis

200

Amino Acids

22.94

Weight (kDa)

6.08

Isoelectric Point (pI)

54.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80190 AT1G80190 AT1G80190 AT1G80190 AT1G80190 AT1G80190
fragaria_vesca	FvH4_1g25440 FvH4_1g25440 FvH4_1g25440 FvH4_1g25440 FvH4_1g25440 FvH4_6g30230
malus_domestica	MD17G1206800.v1.1
prunus_persica	Prupe.3G081400_v2.0.a1 Prupe.3G081400_v2.0.a1 Prupe.3G081400_v2.0.a1 Prupe.3G081400_v2.0.a1 Prupe.3G081400_v2.0.a1
pyrus_communis	pycom17g20960
rosa_chinensis	RchiOBHm_Chr2g0123461 RchiOBHm_Chr2g0136471
rosa_laevigata	RLG00000018757 RLG00000019534
rosa_multiflora	Rmu_co8456461.1_g000001 Rmu_sc0001998.1_g000001 Rmu_sc0005876.1_g000002 Rmu_sc0038680.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108260 Rroxscaffold_2G00120610
rosa_rugosa	Rorug02G0246000 Rorug02G0330800 Rorug02G0330900
rosa_samantha	Rh2AG304600 Rh2AG381800 Rh2BG312700 Rh2BG388500 Rh2CG291100 Rh2CG368200 Rh2DG328600 Rh2DG405000
rosa_wichuraiana	Rw2G024410 Rw2G031210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	430
AclWI	GGATC	2 cut(s)	129, 437
AcsI	RAATTY	3 cut(s)	276, 312, 324
AfaI	GTAC	3 cut(s)	263, 359, 465
AfiI	CCNNNNNNNGG	1 cut(s)	144
AgsI	TTSAA	2 cut(s)	176, 329
AluBI	AGCT	5 cut(s)	64, 337, 380, 589, 597
AluI	AGCT	5 cut(s)	64, 337, 380, 589, 597
Alw21I	GWGCWC	1 cut(s)	591
AlwI	GGATC	2 cut(s)	129, 437
ApeKI	GCWGC	2 cut(s)	61, 243
ApoI	RAATTY	3 cut(s)	276, 312, 324
Asp700I	GAANNNNTTC	1 cut(s)	324
AspS9I	GGNCC	1 cut(s)	193
AsuHPI	GGTGA	3 cut(s)	206, 469, 491
AvaII	GGWCC	1 cut(s)	193
BaeGI	GKGCMC	1 cut(s)	435
BanI	GGYRCC	1 cut(s)	430
BanII	GRGCYC	1 cut(s)	591
BarI	GAAGNNNNNNTAC	2 cut(s)	474, 506
Bbv12I	GWGCWC	1 cut(s)	591
BbvI	GCAGC	2 cut(s)	73, 230
BccI	CCATC	3 cut(s)	29, 244, 574
BisI	GCNGC	2 cut(s)	62, 244
BlsI	GCNGC	2 cut(s)	63, 245
BmcAI	AGTACT	2 cut(s)	359, 465
Bme18I	GGWCC	1 cut(s)	193
BmgT120I	GGNCC	1 cut(s)	193
BmiI	GGNNCC	1 cut(s)	432
BmrI	ACTGGG	1 cut(s)	581
BmsI	GCATC	1 cut(s)	541
BmuI	ACTGGG	1 cut(s)	581
BpuEI	CTTGAG	1 cut(s)	431
Bsc4I	CCNNNNNNNGG	1 cut(s)	144
Bse1I	ACTGG	2 cut(s)	33, 576
BseGI	GGATG	1 cut(s)	21
BseLI	CCNNNNNNNGG	1 cut(s)	144
BseMII	CTCAG	2 cut(s)	360, 546
BseNI	ACTGG	2 cut(s)	33, 576
BseRI	GAGGAG	1 cut(s)	599
BseSI	GKGCMC	1 cut(s)	435
BseXI	GCAGC	2 cut(s)	73, 230
BshNI	GGYRCC	1 cut(s)	430
BsiHKAI	GWGCWC	1 cut(s)	591
BslI	CCNNNNNNNGG	1 cut(s)	144
Bsp1286I	GDGCHC	2 cut(s)	435, 591
Bsp1407I	TGTACA	1 cut(s)	261
Bsp143I	GATC	2 cut(s)	134, 442
BspCNI	CTCAG	2 cut(s)	359, 547
BspLI	GGNNCC	1 cut(s)	432
BspPI	GGATC	2 cut(s)	129, 437
BspT107I	GGYRCC	1 cut(s)	430
BsrGI	TGTACA	1 cut(s)	261
BsrI	ACTGG	2 cut(s)	33, 576
BssMI	GATC	2 cut(s)	134, 442
BstAUI	TGTACA	1 cut(s)	261
BstDEI	CTNAG	3 cut(s)	338, 346, 555
BstENI	CCTNNNNNAGG	1 cut(s)	142
BstF5I	GGATG	1 cut(s)	21
BstKTI	GATC	2 cut(s)	137, 445
BstMBI	GATC	2 cut(s)	134, 442
BstMWI	GCNNNNNNNGC	3 cut(s)	67, 240, 515
BstSLI	GKGCMC	1 cut(s)	435
BstV1I	GCAGC	2 cut(s)	73, 230
BstX2I	RGATCY	1 cut(s)	442
BstXI	CCANNNNNNTGG	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	442
BtsCI	GGATG	1 cut(s)	21
BtsI	GCAGTG	1 cut(s)	426
BtsIMutI	CAGTG	2 cut(s)	426, 569
Cfr13I	GGNCC	1 cut(s)	193
Csp6I	GTAC	3 cut(s)	262, 358, 464
CviAII	CATG	1 cut(s)	475
CviJI	RGCY	7 cut(s)	20, 64, 337, 380, 509, 589, 597
CviKI_1	RGCY	7 cut(s)	20, 64, 337, 380, 509, 589, 597
CviQI	GTAC	3 cut(s)	262, 358, 464
DdeI	CTNAG	3 cut(s)	338, 346, 555
DpnI	GATC	2 cut(s)	136, 444
DpnII	GATC	2 cut(s)	134, 442
DraI	TTTAAA	1 cut(s)	384
Ecl136II	GAGCTC	1 cut(s)	589
Eco24I	GRGCYC	1 cut(s)	591
Eco47I	GGWCC	1 cut(s)	193
Eco53kI	GAGCTC	1 cut(s)	589
EcoICRI	GAGCTC	1 cut(s)	589
EcoNI	CCTNNNNNAGG	1 cut(s)	142
EcoT22I	ATGCAT	1 cut(s)	534
EcoT38I	GRGCYC	1 cut(s)	591
FaeI	CATG	1 cut(s)	478
FalI	AAGNNNNNCTT	2 cut(s)	321, 353
FatI	CATG	1 cut(s)	474
Fnu4HI	GCNGC	2 cut(s)	62, 244
FokI	GGATG	1 cut(s)	8
FriOI	GRGCYC	1 cut(s)	591
Fsp4HI	GCNGC	2 cut(s)	62, 244
GluI	GCNGC	2 cut(s)	62, 244
Hin1II	CATG	1 cut(s)	478
HincII	GTYRAC	1 cut(s)	116
HindII	GTYRAC	1 cut(s)	116
HindIII	AAGCTT	2 cut(s)	335, 378
HphI	GGTGA	3 cut(s)	206, 469, 491
Hpy166II	GTNNAC	1 cut(s)	116
Hpy188I	TCNGA	3 cut(s)	310, 349, 376
Hpy188III	TCNNGA	4 cut(s)	317, 329, 399, 410
Hpy8I	GTNNAC	1 cut(s)	116
Hpy99I	CGWCG	1 cut(s)	473
HpyAV	CCTTC	2 cut(s)	140, 292
HpyCH4V	TGCA	4 cut(s)	44, 104, 154, 532
HpyF10VI	GCNNNNNNNGC	3 cut(s)	67, 240, 515
HpyF3I	CTNAG	3 cut(s)	338, 346, 555
Hsp92II	CATG	1 cut(s)	478
Kzo9I	GATC	2 cut(s)	134, 442
LmnI	GCTCC	1 cut(s)	586
LpnPI	CCDG	6 cut(s)	14, 140, 147, 275, 330, 557
Lsp1109I	GCAGC	2 cut(s)	73, 230
LweI	GCATC	1 cut(s)	541
MaeIII	GTNAC	2 cut(s)	341, 521
MalI	GATC	2 cut(s)	136, 444
MboI	GATC	2 cut(s)	134, 442
MboII	GAAGA	1 cut(s)	332
MflI	RGATCY	1 cut(s)	442
MhlI	GDGCHC	2 cut(s)	435, 591
MluCI	AATT	7 cut(s)	39, 99, 276, 312, 324, 488, 511
MmeI	TCCRAC	1 cut(s)	49
MnlI	CCTC	2 cut(s)	184, 577
Mph1103I	ATGCAT	1 cut(s)	534
MroXI	GAANNNNTTC	1 cut(s)	324
MseI	TTAA	3 cut(s)	363, 383, 540
MslI	CAYNNNNRTG	1 cut(s)	455
MwoI	GCNNNNNNNGC	3 cut(s)	67, 240, 515
NdeII	GATC	2 cut(s)	134, 442
NlaIII	CATG	1 cut(s)	478
NlaIV	GGNNCC	1 cut(s)	432
NmuCI	GTSAC	2 cut(s)	341, 521
NsiI	ATGCAT	1 cut(s)	534
PdmI	GAANNNNTTC	1 cut(s)	324
PkrI	GCNGC	2 cut(s)	63, 245
Psp124BI	GAGCTC	1 cut(s)	591
PspN4I	GGNNCC	1 cut(s)	432
PspPI	GGNCC	1 cut(s)	193
PsuI	RGATCY	1 cut(s)	442
RsaI	GTAC	3 cut(s)	263, 359, 465
RsaNI	GTAC	3 cut(s)	262, 358, 464
RseI	CAYNNNNRTG	1 cut(s)	455
SacI	GAGCTC	1 cut(s)	591
SaqAI	TTAA	3 cut(s)	363, 383, 540
SatI	GCNGC	2 cut(s)	62, 244
Sau3AI	GATC	2 cut(s)	134, 442
Sau96I	GGNCC	1 cut(s)	193
ScaI	AGTACT	2 cut(s)	359, 465
SduI	GDGCHC	2 cut(s)	435, 591
SetI	ASST	9 cut(s)	66, 132, 222, 303, 339, 382, 459, 591, 599
SfaNI	GCATC	1 cut(s)	541
SinI	GGWCC	1 cut(s)	193
SmiMI	CAYNNNNRTG	1 cut(s)	455
SmlI	CTYRAG	1 cut(s)	410
SmoI	CTYRAG	1 cut(s)	410
Sse9I	AATT	7 cut(s)	39, 99, 276, 312, 324, 488, 511
SstI	GAGCTC	1 cut(s)	591
TaqI	TCGA	3 cut(s)	133, 398, 468
TasI	AATT	7 cut(s)	39, 99, 276, 312, 324, 488, 511
TatI	WGTACW	3 cut(s)	261, 357, 463
Tru1I	TTAA	3 cut(s)	363, 383, 540
Tru9I	TTAA	3 cut(s)	363, 383, 540
TscAI	CASTG	2 cut(s)	426, 576
TseFI	GTSAC	2 cut(s)	341, 521
TseI	GCWGC	2 cut(s)	61, 243
Tsp45I	GTSAC	2 cut(s)	341, 521
TspRI	CASTG	2 cut(s)	426, 576
VpaK11BI	GGWCC	1 cut(s)	193
XagI	CCTNNNNNAGG	1 cut(s)	142
XapI	RAATTY	3 cut(s)	276, 312, 324
XmnI	GAANNNNTTC	1 cut(s)	324
ZrmI	AGTACT	2 cut(s)	359, 465
Zsp2I	ATGCAT	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.