Rh2AG381800

DNA replication complex GINS protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0002339
Physical Location & Seq
Forward (+)
57211885 .. 57215335
3451 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG381800.1

Sequence Viewer

Length: 471 bp
ATGTATGGGAGAAAAGCCAGCCAATTGGTCAAAGAAATTGCAAGCGGCGAAAAGGGGCAGCTCACACCTTTCAGTAGTGACCTATTTGATGAAGTAATTGAAGAATGTAAACAGCATTATAATGAGCTTGAATGCTTGATAAGGAGAATGGAAGAACAAGGATTGAATGTCGAGACAGCTAAAAATGAGGATCACTATGGGGCACTCATCCACCACCTCTCTTTAGTTCGCAACAAACGCTGTTTGATGGCATACCTGTACAACCGAGCAGAAATTTTACGAGCTCTGATGTGGAAGGTAGGGTCTGTAATTCCTGAAGAAATAAAAGAGAAACTCAGCTACTCAGAGAAAGAGTACATTACAAAACATTCAGCATCTTTAAAAAAATATATGGCAAGTGTGGAACTCGATTTGGAAGTGGTAATCTCTCTCTCTCTCTCACTCTCTGCATACTGCATACATAAACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Sld5

Protein Analysis

156

Amino Acids

18.02

Weight (kDa)

6.39

Isoelectric Point (pI)

61.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Sld5 PF05916 62 - 134 6e-14 GINS complex protein helical bundle domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 120
AciI CCGC 1 cut(s) 45
AclWI GGATC 1 cut(s) 198
AcsI RAATTY 1 cut(s) 273
AcuI CTGAAG 1 cut(s) 336
AfaI GTAC 2 cut(s) 260, 356
AgsI TTSAA 3 cut(s) 101, 131, 166
AluBI AGCT 5 cut(s) 61, 127, 179, 284, 339
AluI AGCT 5 cut(s) 61, 127, 179, 284, 339
Alw21I GWGCWC 1 cut(s) 286
Alw26I GTCTC 1 cut(s) 167
AlwI GGATC 1 cut(s) 198
ApeKI GCWGC 1 cut(s) 58
ApoI RAATTY 1 cut(s) 273
BaeGI GKGCMC 1 cut(s) 205
BanII GRGCYC 1 cut(s) 286
Bbv12I GWGCWC 1 cut(s) 286
BbvI GCAGC 1 cut(s) 70
BccI CCATC 1 cut(s) 241
BcoDI GTCTC 1 cut(s) 167
BisI GCNGC 2 cut(s) 46, 59
BlsI GCNGC 2 cut(s) 47, 60
BmsI GCATC 1 cut(s) 383
BseGI GGATG 1 cut(s) 207
BseMII CTCAG 2 cut(s) 349, 357
BseSI GKGCMC 1 cut(s) 205
BseXI GCAGC 1 cut(s) 70
BsiHKAI GWGCWC 1 cut(s) 286
BsmAI GTCTC 1 cut(s) 167
BsmI GAATGC 1 cut(s) 137
Bsp1286I GDGCHC 2 cut(s) 205, 286
Bsp1407I TGTACA 1 cut(s) 258
Bsp143I GATC 1 cut(s) 190
BspACI CCGC 1 cut(s) 45
BspCNI CTCAG 2 cut(s) 348, 356
BspPI GGATC 1 cut(s) 198
BsrGI TGTACA 1 cut(s) 258
BssMI GATC 1 cut(s) 190
BstAUI TGTACA 1 cut(s) 258
BstC8I GCNNGC 2 cut(s) 19, 43
BstDEI CTNAG 2 cut(s) 335, 343
BstF5I GGATG 1 cut(s) 207
BstKTI GATC 1 cut(s) 193
BstMAI GTCTC 1 cut(s) 167
BstMBI GATC 1 cut(s) 190
BstMWI GCNNNNNNNGC 1 cut(s) 237
BstSLI GKGCMC 1 cut(s) 205
BstV1I GCAGC 1 cut(s) 70
BstXI CCANNNNNNTGG 1 cut(s) 25
BtsCI GGATG 1 cut(s) 207
Cac8I GCNNGC 2 cut(s) 19, 43
Csp6I GTAC 2 cut(s) 259, 355
CviJI RGCY 7 cut(s) 17, 21, 61, 127, 179, 284, 339
CviKI_1 RGCY 7 cut(s) 17, 21, 61, 127, 179, 284, 339
CviQI GTAC 2 cut(s) 259, 355
DdeI CTNAG 2 cut(s) 335, 343
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
DraI TTTAAA 1 cut(s) 381
Ecl136II GAGCTC 1 cut(s) 284
Eco24I GRGCYC 1 cut(s) 286
Eco53kI GAGCTC 1 cut(s) 284
Eco57I CTGAAG 1 cut(s) 336
EcoICRI GAGCTC 1 cut(s) 284
EcoT38I GRGCYC 1 cut(s) 286
FaiI YATR 9 cut(s) 6, 120, 198, 253, 390, 392, 451, 458, 462
Fnu4HI GCNGC 2 cut(s) 46, 59
FokI GGATG 1 cut(s) 194
FriOI GRGCYC 1 cut(s) 286
Fsp4HI GCNGC 2 cut(s) 46, 59
GluI GCNGC 2 cut(s) 46, 59
Hpy166II GTNNAC 1 cut(s) 110
Hpy188I TCNGA 2 cut(s) 288, 346
Hpy188III TCNNGA 2 cut(s) 172, 314
Hpy8I GTNNAC 1 cut(s) 110
HpyAV CCTTC 1 cut(s) 289
HpyCH4V TGCA 3 cut(s) 41, 449, 456
HpyF10VI GCNNNNNNNGC 1 cut(s) 237
HpyF3I CTNAG 2 cut(s) 335, 343
Kzo9I GATC 1 cut(s) 190
LpnPI CCDG 3 cut(s) 31, 269, 327
Lsp1109I GCAGC 1 cut(s) 70
LweI GCATC 1 cut(s) 383
MaeIII GTNAC 1 cut(s) 77
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MboII GAAGA 3 cut(s) 113, 164, 329
MfeI CAATTG 1 cut(s) 23
MhlI GDGCHC 2 cut(s) 205, 286
MluCI AATT 5 cut(s) 23, 36, 96, 273, 309
MnlI CCTC 2 cut(s) 181, 227
MseI TTAA 1 cut(s) 380
MslI CAYNNNNRTG 1 cut(s) 120
MunI CAATTG 1 cut(s) 23
Mva1269I GAATGC 1 cut(s) 137
MwoI GCNNNNNNNGC 1 cut(s) 237
NdeII GATC 1 cut(s) 190
NmuCI GTSAC 1 cut(s) 77
PctI GAATGC 1 cut(s) 137
PkrI GCNGC 2 cut(s) 47, 60
PsiI TTATAA 1 cut(s) 120
Psp124BI GAGCTC 1 cut(s) 286
RsaI GTAC 2 cut(s) 260, 356
RsaNI GTAC 2 cut(s) 259, 355
RseI CAYNNNNRTG 1 cut(s) 120
SacI GAGCTC 1 cut(s) 286
SaqAI TTAA 1 cut(s) 380
SatI GCNGC 2 cut(s) 46, 59
Sau3AI GATC 1 cut(s) 190
SduI GDGCHC 2 cut(s) 205, 286
SfaNI GCATC 1 cut(s) 383
SmiMI CAYNNNNRTG 1 cut(s) 120
Sse9I AATT 5 cut(s) 23, 36, 96, 273, 309
SsiI CCGC 1 cut(s) 45
SstI GAGCTC 1 cut(s) 286
TaqI TCGA 2 cut(s) 171, 408
TasI AATT 5 cut(s) 23, 36, 96, 273, 309
TatI WGTACW 2 cut(s) 258, 354
TauI GCSGC 1 cut(s) 48
Tru1I TTAA 1 cut(s) 380
Tru9I TTAA 1 cut(s) 380
TseFI GTSAC 1 cut(s) 77
TseI GCWGC 1 cut(s) 58
Tsp45I GTSAC 1 cut(s) 77
TspDTI ATGAA 1 cut(s) 105
XapI RAATTY 1 cut(s) 273
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.