Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0002339

Physical Location & Seq

Genomic Coordinates Reverse (-)

41595112 .. 41599186

Gene Structure 4075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG328600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGTACGGGAGAAAGGCCTCCCAATTGGTCAAAGAAATCGCAACCAGCGAAAAGGGCCAGCTCACCCCTTTCAGTAGTGACCTGTTTGATGAAGTGATTGAAGAATGTAAACAGCACTATCATGAGCTTGAATGCTTGATAAGGAGAATGGAAGAACAAGGATTAAATGTCGAAACAGCTAAAAATGAGGACCACTATGGAGCACTCATCCACCACCTCTCTTTAGTTCGCAATAAACGCTGCTTAATGGCATATGTGTACAACCGAGCAGAAATTTTACGAACTCTGATGTGGAAGGTAGGGTCTGTAATTCCTGAAGAAATTAAAGAGAAACTCAGTTACTCAGAGAAAGAGTACATTACAAAACATTCAGCATCTCTGAAAAAATATATGTCAAGCGTGGAACTCGATTTGGAAGTGGATATGGTACCACCAAAAGATCCCTACATCAAGGTGAGAGTCCTCGATGACTTGGGTGGAGAGATACTACTCAGTGATGATAAGAAAGCAAATTTTACTCGCCACTCAATGCATTTTCTTAAACGAACTGATGCCGAGCAGCTCATCTCACAGGGCAAGATGGAGGAGCTCAAAGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sld5

Protein Analysis

199

Amino Acids

23.17

Weight (kDa)

5.94

Isoelectric Point (pI)

62.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sld5	PF05916	63 - 134	1.7e-13	GINS complex protein helical bundle domain
PSF1_C	PF24997	146 - 198	1.9e-29	PSF1 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0002339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80190 AT1G80190 AT1G80190 AT1G80190 AT1G80190 AT1G80190
fragaria_vesca	FvH4_1g25440 FvH4_1g25440 FvH4_1g25440 FvH4_1g25440 FvH4_1g25440 FvH4_6g30230
malus_domestica	MD17G1206800.v1.1
prunus_persica	Prupe.3G081400_v2.0.a1 Prupe.3G081400_v2.0.a1 Prupe.3G081400_v2.0.a1 Prupe.3G081400_v2.0.a1 Prupe.3G081400_v2.0.a1
pyrus_communis	pycom17g20960
rosa_chinensis	RchiOBHm_Chr2g0123461 RchiOBHm_Chr2g0136471
rosa_laevigata	RLG00000018757 RLG00000019534
rosa_multiflora	Rmu_co8456461.1_g000001 Rmu_sc0001998.1_g000001 Rmu_sc0005876.1_g000002 Rmu_sc0038680.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108260 Rroxscaffold_2G00120610
rosa_rugosa	Rorug02G0246000 Rorug02G0330800 Rorug02G0330900
rosa_samantha	Rh2AG304600 Rh2AG381800 Rh2BG312700 Rh2BG388500 Rh2CG291100 Rh2CG368200 Rh2DG328600 Rh2DG405000
rosa_wichuraiana	Rw2G024410 Rw2G031210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	427
AccB1I	GGYRCC	1 cut(s)	427
AclWI	GGATC	1 cut(s)	434
AcsI	RAATTY	2 cut(s)	273, 511
AcuI	CTGAAG	1 cut(s)	336
AfaI	GTAC	4 cut(s)	5, 260, 356, 429
AgsI	TTSAA	2 cut(s)	101, 131
AluBI	AGCT	5 cut(s)	61, 127, 179, 562, 589
AluI	AGCT	5 cut(s)	61, 127, 179, 562, 589
Alw21I	GWGCWC	2 cut(s)	205, 591
AlwI	GGATC	1 cut(s)	434
AoxI	GGCC	2 cut(s)	15, 55
ApeKI	GCWGC	2 cut(s)	240, 559
ApoI	RAATTY	2 cut(s)	273, 511
Asp718I	GGTACC	1 cut(s)	427
AspS9I	GGNCC	2 cut(s)	55, 190
AsuHPI	GGTGA	2 cut(s)	55, 466
AvaII	GGWCC	1 cut(s)	190
BanI	GGYRCC	1 cut(s)	427
BanII	GRGCYC	1 cut(s)	591
Bbv12I	GWGCWC	2 cut(s)	205, 591
BbvI	GCAGC	2 cut(s)	227, 571
BccI	CCATC	1 cut(s)	574
BisI	GCNGC	2 cut(s)	241, 560
BlsI	GCNGC	2 cut(s)	242, 561
Bme18I	GGWCC	1 cut(s)	190
BmgT120I	GGNCC	2 cut(s)	55, 190
BmiI	GGNNCC	1 cut(s)	429
BmsI	GCATC	2 cut(s)	383, 541
BseGI	GGATG	1 cut(s)	207
BseMII	CTCAG	3 cut(s)	349, 357, 505
BseRI	GAGGAG	1 cut(s)	599
BseXI	GCAGC	2 cut(s)	227, 571
BshFI	GGCC	2 cut(s)	17, 57
BshNI	GGYRCC	1 cut(s)	427
BsiHKAI	GWGCWC	2 cut(s)	205, 591
BsmI	GAATGC	1 cut(s)	137
BsnI	GGCC	2 cut(s)	17, 57
Bsp1286I	GDGCHC	2 cut(s)	205, 591
Bsp1407I	TGTACA	1 cut(s)	258
Bsp143I	GATC	1 cut(s)	439
BspANI	GGCC	2 cut(s)	17, 57
BspCNI	CTCAG	3 cut(s)	348, 356, 504
BspHI	TCATGA	1 cut(s)	121
BspLI	GGNNCC	1 cut(s)	429
BspPI	GGATC	1 cut(s)	434
BspT107I	GGYRCC	1 cut(s)	427
BsrGI	TGTACA	1 cut(s)	258
BssMI	GATC	1 cut(s)	439
BstAUI	TGTACA	1 cut(s)	258
BstC8I	GCNNGC	1 cut(s)	59
BstDEI	CTNAG	3 cut(s)	335, 343, 491
BstF5I	GGATG	1 cut(s)	207
BstKTI	GATC	1 cut(s)	442
BstMBI	GATC	1 cut(s)	439
BstMWI	GCNNNNNNNGC	2 cut(s)	54, 237
BstV1I	GCAGC	2 cut(s)	227, 571
BstX2I	RGATCY	1 cut(s)	439
BstYI	RGATCY	1 cut(s)	439
BsuRI	GGCC	2 cut(s)	17, 57
BtsCI	GGATG	1 cut(s)	207
BtsIMutI	CAGTG	1 cut(s)	499
Cac8I	GCNNGC	1 cut(s)	59
CciI	TCATGA	1 cut(s)	121
Cfr13I	GGNCC	2 cut(s)	55, 190
Csp6I	GTAC	4 cut(s)	4, 259, 355, 428
CviAII	CATG	1 cut(s)	122
CviJI	RGCY	7 cut(s)	17, 57, 61, 127, 179, 562, 589
CviKI_1	RGCY	7 cut(s)	17, 57, 61, 127, 179, 562, 589
CviQI	GTAC	4 cut(s)	4, 259, 355, 428
DdeI	CTNAG	3 cut(s)	335, 343, 491
DpnI	GATC	1 cut(s)	441
DpnII	GATC	1 cut(s)	439
Ecl136II	GAGCTC	1 cut(s)	589
Eco147I	AGGCCT	1 cut(s)	17
Eco24I	GRGCYC	1 cut(s)	591
Eco47I	GGWCC	1 cut(s)	190
Eco53kI	GAGCTC	1 cut(s)	589
Eco57I	CTGAAG	1 cut(s)	336
EcoICRI	GAGCTC	1 cut(s)	589
EcoT22I	ATGCAT	1 cut(s)	534
EcoT38I	GRGCYC	1 cut(s)	591
FaeI	CATG	1 cut(s)	125
FaiI	YATR	7 cut(s)	123, 198, 253, 255, 390, 392, 425
FatI	CATG	1 cut(s)	121
FauNDI	CATATG	1 cut(s)	253
Fnu4HI	GCNGC	2 cut(s)	241, 560
FokI	GGATG	1 cut(s)	194
FriOI	GRGCYC	1 cut(s)	591
Fsp4HI	GCNGC	2 cut(s)	241, 560
GluI	GCNGC	2 cut(s)	241, 560
HaeIII	GGCC	2 cut(s)	17, 57
Hin1II	CATG	1 cut(s)	125
HinfI	GANTC	1 cut(s)	459
HphI	GGTGA	2 cut(s)	55, 466
Hpy166II	GTNNAC	2 cut(s)	110, 259
Hpy188I	TCNGA	3 cut(s)	288, 346, 381
Hpy188III	TCNNGA	2 cut(s)	122, 314
Hpy8I	GTNNAC	2 cut(s)	110, 259
HpyAV	CCTTC	1 cut(s)	289
HpyCH4V	TGCA	1 cut(s)	532
HpyF10VI	GCNNNNNNNGC	2 cut(s)	54, 237
HpyF3I	CTNAG	3 cut(s)	335, 343, 491
Hsp92II	CATG	1 cut(s)	125
KpnI	GGTACC	1 cut(s)	431
Kzo9I	GATC	1 cut(s)	439
LmnI	GCTCC	2 cut(s)	200, 586
LpnPI	CCDG	5 cut(s)	58, 71, 95, 327, 557
Lsp1109I	GCAGC	2 cut(s)	227, 571
LweI	GCATC	2 cut(s)	383, 541
MaeIII	GTNAC	2 cut(s)	77, 338
MalI	GATC	1 cut(s)	441
MboI	GATC	1 cut(s)	439
MboII	GAAGA	3 cut(s)	113, 164, 329
MfeI	CAATTG	1 cut(s)	23
MflI	RGATCY	1 cut(s)	439
MhlI	GDGCHC	2 cut(s)	205, 591
MluCI	AATT	5 cut(s)	23, 273, 309, 321, 511
MlyI	GAGTC	1 cut(s)	468
MnlI	CCTC	5 cut(s)	28, 181, 227, 473, 577
Mph1103I	ATGCAT	1 cut(s)	534
MseI	TTAA	4 cut(s)	164, 245, 324, 540
MslI	CAYNNNNRTG	2 cut(s)	120, 452
MunI	CAATTG	1 cut(s)	23
Mva1269I	GAATGC	1 cut(s)	137
MwoI	GCNNNNNNNGC	2 cut(s)	54, 237
NdeI	CATATG	1 cut(s)	253
NdeII	GATC	1 cut(s)	439
NlaIII	CATG	1 cut(s)	125
NlaIV	GGNNCC	1 cut(s)	429
NmeAIII	GCCGAG	1 cut(s)	580
NmuCI	GTSAC	1 cut(s)	77
NsiI	ATGCAT	1 cut(s)	534
PagI	TCATGA	1 cut(s)	121
PceI	AGGCCT	1 cut(s)	17
PcsI	WCGNNNNNNNCGW	1 cut(s)	45
PctI	GAATGC	1 cut(s)	137
PkrI	GCNGC	2 cut(s)	242, 561
PleI	GAGTC	1 cut(s)	467
PpsI	GAGTC	1 cut(s)	467
Psp124BI	GAGCTC	1 cut(s)	591
PspN4I	GGNNCC	1 cut(s)	429
PspPI	GGNCC	2 cut(s)	55, 190
PsuI	RGATCY	1 cut(s)	439
RsaI	GTAC	4 cut(s)	5, 260, 356, 429
RsaNI	GTAC	4 cut(s)	4, 259, 355, 428
RseI	CAYNNNNRTG	2 cut(s)	120, 452
SacI	GAGCTC	1 cut(s)	591
SaqAI	TTAA	4 cut(s)	164, 245, 324, 540
SatI	GCNGC	2 cut(s)	241, 560
Sau3AI	GATC	1 cut(s)	439
Sau96I	GGNCC	2 cut(s)	55, 190
SchI	GAGTC	1 cut(s)	468
SduI	GDGCHC	2 cut(s)	205, 591
SetI	ASST	9 cut(s)	63, 84, 129, 181, 219, 300, 456, 564, 591
SfaNI	GCATC	2 cut(s)	383, 541
SinI	GGWCC	1 cut(s)	190
SmiMI	CAYNNNNRTG	2 cut(s)	120, 452
Sse9I	AATT	5 cut(s)	23, 273, 309, 321, 511
SseBI	AGGCCT	1 cut(s)	17
SstI	GAGCTC	1 cut(s)	591
StuI	AGGCCT	1 cut(s)	17
TaqI	TCGA	3 cut(s)	171, 408, 465
TasI	AATT	5 cut(s)	23, 273, 309, 321, 511
TatI	WGTACW	2 cut(s)	258, 354
Tru1I	TTAA	4 cut(s)	164, 245, 324, 540
Tru9I	TTAA	4 cut(s)	164, 245, 324, 540
TscAI	CASTG	1 cut(s)	499
TseFI	GTSAC	1 cut(s)	77
TseI	GCWGC	2 cut(s)	240, 559
Tsp45I	GTSAC	1 cut(s)	77
TspDTI	ATGAA	1 cut(s)	105
TspRI	CASTG	1 cut(s)	499
VpaK11BI	GGWCC	1 cut(s)	190
XapI	RAATTY	2 cut(s)	273, 511
Zsp2I	ATGCAT	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.