Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002339

Physical Location & Seq

Genomic Coordinates Reverse (-)

32239608 .. 32242822

Gene Structure 3215 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00108260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ATGTATGGGAGAAAAGCCAGCCAATTGGTCAAAGAAATTGCAAGCAGCGAAAGGGGGCAGCTCACACCTTTCAGTAGTGACCTATTTGATGAAGTAATTGAAGAATGTAAACAGCATTATCATGAGCTTGAATGCTTGATAAGGAGAATGGAGGAACAAGGATTGAATGTCGAGACAGCTAAAAATGAGGATCACTATGGGGCACTCATCCACCACCTCTCTTTAGTTCGCAACAAACGCTGTTTGATGGCATACCTGTACAACCGAGCAGAAATTTTACGAGCTCTGATGTGGAAGGTAGGGTCTGTAATTCCTGAAGAAATAAAAGAGAAACTCAGCTACTCAGAGAAAGAGTACATTACAAAACATTCAGCATCTTTAAAAAAATATATGGCAAGTGTGGAACTCGATTTGGAAGTGGATATGGTGCCACCAAAAGATCCCTACATCAAGGTGAGAGTTCTTGATGACATGGGTGGAGAGATACTACTCAGCGATGACAAGAAAGCAAATTTTACTCGTCACTCAATGCATTTTCTTAAACGAACTGATGCTGAACAGCTCATTTCACAGGGCAAGATGGAGGAGCTCAAAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sld5

Protein Analysis

199

Amino Acids

23.17

Weight (kDa)

5.94

Isoelectric Point (pI)

61.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sld5	PF05916	62 - 134	1.1e-13	GINS complex protein helical bundle domain
PSF1_C	PF24997	146 - 198	2.1e-29	PSF1 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80190 AT1G80190 AT1G80190 AT1G80190 AT1G80190 AT1G80190
fragaria_vesca	FvH4_1g25440 FvH4_1g25440 FvH4_1g25440 FvH4_1g25440 FvH4_1g25440 FvH4_6g30230
malus_domestica	MD17G1206800.v1.1
prunus_persica	Prupe.3G081400_v2.0.a1 Prupe.3G081400_v2.0.a1 Prupe.3G081400_v2.0.a1 Prupe.3G081400_v2.0.a1 Prupe.3G081400_v2.0.a1
pyrus_communis	pycom17g20960
rosa_chinensis	RchiOBHm_Chr2g0123461 RchiOBHm_Chr2g0136471
rosa_laevigata	RLG00000018757 RLG00000019534
rosa_multiflora	Rmu_co8456461.1_g000001 Rmu_sc0001998.1_g000001 Rmu_sc0005876.1_g000002 Rmu_sc0038680.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108260 Rroxscaffold_2G00120610
rosa_rugosa	Rorug02G0246000 Rorug02G0330800 Rorug02G0330900
rosa_samantha	Rh2AG304600 Rh2AG381800 Rh2BG312700 Rh2BG388500 Rh2CG291100 Rh2CG368200 Rh2DG328600 Rh2DG405000
rosa_wichuraiana	Rw2G024410 Rw2G031210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	427
AclWI	GGATC	2 cut(s)	198, 434
AcsI	RAATTY	2 cut(s)	273, 511
AcuI	CTGAAG	1 cut(s)	336
AfaI	GTAC	2 cut(s)	260, 356
AgsI	TTSAA	3 cut(s)	101, 131, 166
AluBI	AGCT	7 cut(s)	61, 127, 179, 284, 339, 562, 589
AluI	AGCT	7 cut(s)	61, 127, 179, 284, 339, 562, 589
Alw21I	GWGCWC	2 cut(s)	286, 591
Alw26I	GTCTC	1 cut(s)	167
AlwI	GGATC	2 cut(s)	198, 434
ApeKI	GCWGC	2 cut(s)	45, 58
ApoI	RAATTY	2 cut(s)	273, 511
AsuHPI	GGTGA	1 cut(s)	466
BaeGI	GKGCMC	1 cut(s)	205
BanI	GGYRCC	1 cut(s)	427
BanII	GRGCYC	2 cut(s)	286, 591
Bbv12I	GWGCWC	2 cut(s)	286, 591
BbvI	GCAGC	2 cut(s)	57, 70
BccI	CCATC	2 cut(s)	241, 574
BcoDI	GTCTC	1 cut(s)	167
BisI	GCNGC	2 cut(s)	46, 59
BlsI	GCNGC	2 cut(s)	47, 60
BmiI	GGNNCC	1 cut(s)	429
BmsI	GCATC	2 cut(s)	383, 541
BseGI	GGATG	1 cut(s)	207
BseMII	CTCAG	3 cut(s)	349, 357, 505
BseRI	GAGGAG	1 cut(s)	599
BseSI	GKGCMC	1 cut(s)	205
BseXI	GCAGC	2 cut(s)	57, 70
BshNI	GGYRCC	1 cut(s)	427
BsiHKAI	GWGCWC	2 cut(s)	286, 591
BsmAI	GTCTC	1 cut(s)	167
BsmI	GAATGC	1 cut(s)	137
Bsp1286I	GDGCHC	3 cut(s)	205, 286, 591
Bsp1407I	TGTACA	1 cut(s)	258
Bsp143I	GATC	2 cut(s)	190, 439
BspCNI	CTCAG	3 cut(s)	348, 356, 504
BspHI	TCATGA	1 cut(s)	121
BspLI	GGNNCC	1 cut(s)	429
BspPI	GGATC	2 cut(s)	198, 434
BspT107I	GGYRCC	1 cut(s)	427
BsrGI	TGTACA	1 cut(s)	258
BssMI	GATC	2 cut(s)	190, 439
BstAUI	TGTACA	1 cut(s)	258
BstC8I	GCNNGC	2 cut(s)	19, 43
BstDEI	CTNAG	3 cut(s)	335, 343, 491
BstF5I	GGATG	1 cut(s)	207
BstKTI	GATC	2 cut(s)	193, 442
BstMAI	GTCTC	1 cut(s)	167
BstMBI	GATC	2 cut(s)	190, 439
BstMWI	GCNNNNNNNGC	1 cut(s)	237
BstSLI	GKGCMC	1 cut(s)	205
BstV1I	GCAGC	2 cut(s)	57, 70
BstX2I	RGATCY	1 cut(s)	439
BstXI	CCANNNNNNTGG	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	439
BtgZI	GCGATG	1 cut(s)	510
BtsCI	GGATG	1 cut(s)	207
Cac8I	GCNNGC	2 cut(s)	19, 43
CciI	TCATGA	1 cut(s)	121
Csp6I	GTAC	2 cut(s)	259, 355
CviAII	CATG	2 cut(s)	122, 472
CviJI	RGCY	9 cut(s)	17, 21, 61, 127, 179, 284, 339, 562, 589
CviKI_1	RGCY	9 cut(s)	17, 21, 61, 127, 179, 284, 339, 562, 589
CviQI	GTAC	2 cut(s)	259, 355
DdeI	CTNAG	3 cut(s)	335, 343, 491
DpnI	GATC	2 cut(s)	192, 441
DpnII	GATC	2 cut(s)	190, 439
DraI	TTTAAA	1 cut(s)	381
Ecl136II	GAGCTC	2 cut(s)	284, 589
Eco24I	GRGCYC	2 cut(s)	286, 591
Eco53kI	GAGCTC	2 cut(s)	284, 589
Eco57I	CTGAAG	1 cut(s)	336
EcoICRI	GAGCTC	2 cut(s)	284, 589
EcoT22I	ATGCAT	1 cut(s)	534
EcoT38I	GRGCYC	2 cut(s)	286, 591
FaeI	CATG	2 cut(s)	125, 475
FaiI	YATR	8 cut(s)	6, 123, 198, 253, 390, 392, 425, 473
FatI	CATG	2 cut(s)	121, 471
Fnu4HI	GCNGC	2 cut(s)	46, 59
FokI	GGATG	1 cut(s)	194
FriOI	GRGCYC	2 cut(s)	286, 591
Fsp4HI	GCNGC	2 cut(s)	46, 59
GluI	GCNGC	2 cut(s)	46, 59
Hin1II	CATG	2 cut(s)	125, 475
HphI	GGTGA	1 cut(s)	466
Hpy166II	GTNNAC	1 cut(s)	110
Hpy188I	TCNGA	2 cut(s)	288, 346
Hpy188III	TCNNGA	4 cut(s)	122, 172, 314, 464
Hpy8I	GTNNAC	1 cut(s)	110
HpyAV	CCTTC	1 cut(s)	289
HpyCH4V	TGCA	2 cut(s)	41, 532
HpyF10VI	GCNNNNNNNGC	1 cut(s)	237
HpyF3I	CTNAG	3 cut(s)	335, 343, 491
Hsp92II	CATG	2 cut(s)	125, 475
Kzo9I	GATC	2 cut(s)	190, 439
LmnI	GCTCC	1 cut(s)	586
LpnPI	CCDG	4 cut(s)	31, 269, 327, 557
Lsp1109I	GCAGC	2 cut(s)	57, 70
LweI	GCATC	2 cut(s)	383, 541
MaeIII	GTNAC	2 cut(s)	77, 521
MalI	GATC	2 cut(s)	192, 441
MboI	GATC	2 cut(s)	190, 439
MboII	GAAGA	2 cut(s)	113, 329
MfeI	CAATTG	1 cut(s)	23
MflI	RGATCY	1 cut(s)	439
MhlI	GDGCHC	3 cut(s)	205, 286, 591
MluCI	AATT	6 cut(s)	23, 36, 96, 273, 309, 511
MnlI	CCTC	4 cut(s)	145, 181, 227, 577
Mph1103I	ATGCAT	1 cut(s)	534
MseI	TTAA	2 cut(s)	380, 540
MslI	CAYNNNNRTG	2 cut(s)	120, 452
MunI	CAATTG	1 cut(s)	23
Mva1269I	GAATGC	1 cut(s)	137
MwoI	GCNNNNNNNGC	1 cut(s)	237
NdeII	GATC	2 cut(s)	190, 439
NlaIII	CATG	2 cut(s)	125, 475
NlaIV	GGNNCC	1 cut(s)	429
NmuCI	GTSAC	2 cut(s)	77, 521
NsiI	ATGCAT	1 cut(s)	534
PagI	TCATGA	1 cut(s)	121
PctI	GAATGC	1 cut(s)	137
PkrI	GCNGC	2 cut(s)	47, 60
Psp124BI	GAGCTC	2 cut(s)	286, 591
PspN4I	GGNNCC	1 cut(s)	429
PsuI	RGATCY	1 cut(s)	439
RsaI	GTAC	2 cut(s)	260, 356
RsaNI	GTAC	2 cut(s)	259, 355
RseI	CAYNNNNRTG	2 cut(s)	120, 452
SacI	GAGCTC	2 cut(s)	286, 591
SaqAI	TTAA	2 cut(s)	380, 540
SatI	GCNGC	2 cut(s)	46, 59
Sau3AI	GATC	2 cut(s)	190, 439
SduI	GDGCHC	3 cut(s)	205, 286, 591
SfaNI	GCATC	2 cut(s)	383, 541
SmiMI	CAYNNNNRTG	2 cut(s)	120, 452
Sse9I	AATT	6 cut(s)	23, 36, 96, 273, 309, 511
SstI	GAGCTC	2 cut(s)	286, 591
TaqI	TCGA	2 cut(s)	171, 408
TasI	AATT	6 cut(s)	23, 36, 96, 273, 309, 511
TatI	WGTACW	2 cut(s)	258, 354
Tru1I	TTAA	2 cut(s)	380, 540
Tru9I	TTAA	2 cut(s)	380, 540
TseFI	GTSAC	2 cut(s)	77, 521
TseI	GCWGC	2 cut(s)	45, 58
Tsp45I	GTSAC	2 cut(s)	77, 521
TspDTI	ATGAA	1 cut(s)	105
XapI	RAATTY	2 cut(s)	273, 511
Zsp2I	ATGCAT	1 cut(s)	534

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.