Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0002339

Physical Location & Seq

Genomic Coordinates Reverse (-)

24980228 .. 24983875

Gene Structure 3648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1206800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 594 bp

ATGTATGGGACAAATGCCATCCAACTGGTCAAAGAAATTGCAAATGGCGAAAAGGGGCAGCTCACGGCTTTCAGTAGTAATCTGTTCAAGGATGTAATTGCAGAATGTAGTCAACATTACGAAGATCTTCAAAAGTCGTTAAGGAAAATGCAGGAAGCAGGAATAGATTTCCAAACTCAAAATGAGGACCATTATGGTTTCCTCATCCACCACCTTTCTTTACTTCGCAATAAACGCTGCTTAATGACTTACATGCACAGCCGAGCAGAAATGTTACGGAATCTCATATGGAAGGTGGGCTATGAAATTCCAGAAGAAATTGAAGAGAAGCTTAGTCACACAGAGAAAGAGTACTTTAAGAAACATTCAGAAGCTTTAAAATCATACATGTCGAGAGTGGAACTCCATTTGGATATGGATATGGTGCCCCCGAAAGACCCCTACATCAAGGTGAGAGTCCTCGATGACATGGGCGAAGTACAATTACCTAGCTTCAACACAGCCAATTTTGCTCAGCACTCGATGCATTTTCTCAAAAGAACTGATGCTGAGAAGTACATCTCACTGGGGAAGATGGAGGAGCTCACAGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Sld5

Protein Analysis

198

Amino Acids

23.05

Weight (kDa)

6.06

Isoelectric Point (pI)

54.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Sld5	PF05916	60 - 133	1.1e-13	GINS complex protein helical bundle domain
PSF1_C	PF24997	145 - 196	1.1e-24	PSF1 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002339)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G80190 AT1G80190 AT1G80190 AT1G80190 AT1G80190 AT1G80190
fragaria_vesca	FvH4_1g25440 FvH4_1g25440 FvH4_1g25440 FvH4_1g25440 FvH4_1g25440 FvH4_6g30230
malus_domestica	MD17G1206800.v1.1
prunus_persica	Prupe.3G081400_v2.0.a1 Prupe.3G081400_v2.0.a1 Prupe.3G081400_v2.0.a1 Prupe.3G081400_v2.0.a1 Prupe.3G081400_v2.0.a1
pyrus_communis	pycom17g20960
rosa_chinensis	RchiOBHm_Chr2g0123461 RchiOBHm_Chr2g0136471
rosa_laevigata	RLG00000018757 RLG00000019534
rosa_multiflora	Rmu_co8456461.1_g000001 Rmu_sc0001998.1_g000001 Rmu_sc0005876.1_g000002 Rmu_sc0038680.1_g000001
rosa_roxburghii	Rroxscaffold_2G00108260 Rroxscaffold_2G00120610
rosa_rugosa	Rorug02G0246000 Rorug02G0330800 Rorug02G0330900
rosa_samantha	Rh2AG304600 Rh2AG381800 Rh2BG312700 Rh2BG388500 Rh2CG291100 Rh2CG368200 Rh2DG328600 Rh2DG405000
rosa_wichuraiana	Rw2G024410 Rw2G031210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	424
AcsI	RAATTY	1 cut(s)	306
AdeI	CACNNNGTG	1 cut(s)	591
AfaI	GTAC	3 cut(s)	353, 480, 557
AflIII	ACRYGT	1 cut(s)	387
AgsI	TTSAA	4 cut(s)	88, 131, 323, 496
AluBI	AGCT	5 cut(s)	61, 331, 374, 492, 583
AluI	AGCT	5 cut(s)	61, 331, 374, 492, 583
Alw21I	GWGCWC	1 cut(s)	585
ApeKI	GCWGC	2 cut(s)	58, 237
ApoI	RAATTY	1 cut(s)	306
Asp700I	GAANNNNTTC	1 cut(s)	126
AspS9I	GGNCC	1 cut(s)	187
AsuHPI	GGTGA	1 cut(s)	463
AvaII	GGWCC	1 cut(s)	187
BaeGI	GKGCMC	1 cut(s)	429
BanI	GGYRCC	1 cut(s)	424
BanII	GRGCYC	1 cut(s)	585
BarI	GAAGNNNNNNTAC	2 cut(s)	468, 500
Bbv12I	GWGCWC	1 cut(s)	585
BbvI	GCAGC	2 cut(s)	70, 224
BccI	CCATC	2 cut(s)	26, 568
BceAI	ACGGC	1 cut(s)	81
BfaI	CTAG	1 cut(s)	489
BglII	AGATCT	1 cut(s)	124
BisI	GCNGC	2 cut(s)	59, 238
BlpI	GCTNAGC	1 cut(s)	513
BlsI	GCNGC	2 cut(s)	60, 239
BmcAI	AGTACT	1 cut(s)	353
Bme18I	GGWCC	1 cut(s)	187
BmgT120I	GGNCC	1 cut(s)	187
BmiI	GGNNCC	1 cut(s)	426
BmrI	ACTGGG	1 cut(s)	575
BmsI	GCATC	2 cut(s)	513, 535
BmuI	ACTGGG	1 cut(s)	575
BplI	GAGNNNNNCTC	2 cut(s)	387, 419
Bpu1102I	GCTNAGC	1 cut(s)	513
Bse1I	ACTGG	2 cut(s)	30, 570
BseGI	GGATG	3 cut(s)	18, 97, 204
BseMII	CTCAG	2 cut(s)	527, 540
BseNI	ACTGG	2 cut(s)	30, 570
BseRI	GAGGAG	1 cut(s)	593
BseSI	GKGCMC	1 cut(s)	429
BseXI	GCAGC	2 cut(s)	70, 224
BshNI	GGYRCC	1 cut(s)	424
BsiHKAI	GWGCWC	1 cut(s)	585
BslFI	GGGAC	1 cut(s)	22
BsmFI	GGGAC	1 cut(s)	22
Bsp1286I	GDGCHC	2 cut(s)	429, 585
Bsp143I	GATC	1 cut(s)	124
Bsp1720I	GCTNAGC	1 cut(s)	513
BspCNI	CTCAG	2 cut(s)	526, 541
BspLI	GGNNCC	1 cut(s)	426
BspT107I	GGYRCC	1 cut(s)	424
BsrI	ACTGG	2 cut(s)	30, 570
BssMI	GATC	1 cut(s)	124
Bst6I	CTCTTC	1 cut(s)	318
BstAPI	GCANNNNNTGC	1 cut(s)	523
BstDEI	CTNAG	3 cut(s)	332, 513, 549
BstF5I	GGATG	3 cut(s)	18, 97, 204
BstKTI	GATC	1 cut(s)	127
BstMBI	GATC	1 cut(s)	124
BstMWI	GCNNNNNNNGC	3 cut(s)	234, 509, 523
BstNSI	RCATGY	2 cut(s)	256, 391
BstSLI	GKGCMC	1 cut(s)	429
BstV1I	GCAGC	2 cut(s)	70, 224
BstX2I	RGATCY	1 cut(s)	124
BstXI	CCANNNNNNTGG	1 cut(s)	25
BstYI	RGATCY	1 cut(s)	124
BtsCI	GGATG	3 cut(s)	18, 97, 204
BtsIMutI	CAGTG	1 cut(s)	563
Cfr13I	GGNCC	1 cut(s)	187
Csp6I	GTAC	3 cut(s)	352, 479, 556
CviAII	CATG	3 cut(s)	253, 388, 469
CviJI	RGCY	9 cut(s)	61, 68, 261, 300, 331, 374, 492, 503, 583
CviKI_1	RGCY	9 cut(s)	61, 68, 261, 300, 331, 374, 492, 503, 583
CviQI	GTAC	3 cut(s)	352, 479, 556
DdeI	CTNAG	3 cut(s)	332, 513, 549
DpnI	GATC	1 cut(s)	126
DpnII	GATC	1 cut(s)	124
DraI	TTTAAA	1 cut(s)	378
DraIII	CACNNNGTG	1 cut(s)	591
Eam1104I	CTCTTC	1 cut(s)	318
EarI	CTCTTC	1 cut(s)	318
Ecl136II	GAGCTC	1 cut(s)	583
Eco24I	GRGCYC	1 cut(s)	585
Eco47I	GGWCC	1 cut(s)	187
Eco53kI	GAGCTC	1 cut(s)	583
EcoICRI	GAGCTC	1 cut(s)	583
EcoT22I	ATGCAT	1 cut(s)	528
EcoT38I	GRGCYC	1 cut(s)	585
FaeI	CATG	3 cut(s)	256, 391, 472
FalI	AAGNNNNNCTT	2 cut(s)	315, 347
FaqI	GGGAC	1 cut(s)	22
FatI	CATG	3 cut(s)	252, 387, 468
FauNDI	CATATG	1 cut(s)	287
Fnu4HI	GCNGC	2 cut(s)	59, 238
FokI	GGATG	3 cut(s)	5, 104, 191
FriOI	GRGCYC	1 cut(s)	585
Fsp4HI	GCNGC	2 cut(s)	59, 238
FspBI	CTAG	1 cut(s)	489
GluI	GCNGC	2 cut(s)	59, 238
Hin1II	CATG	3 cut(s)	256, 391, 472
HincII	GTYRAC	1 cut(s)	113
HindII	GTYRAC	1 cut(s)	113
HindIII	AAGCTT	2 cut(s)	329, 372
HinfI	GANTC	2 cut(s)	280, 456
HphI	GGTGA	1 cut(s)	463
Hpy166II	GTNNAC	1 cut(s)	113
Hpy188I	TCNGA	1 cut(s)	370
Hpy188III	TCNNGA	2 cut(s)	311, 393
Hpy8I	GTNNAC	1 cut(s)	113
HpyAV	CCTTC	1 cut(s)	286
HpyCH4V	TGCA	5 cut(s)	41, 101, 151, 256, 526
HpyF10VI	GCNNNNNNNGC	3 cut(s)	234, 509, 523
HpyF3I	CTNAG	3 cut(s)	332, 513, 549
Hsp92II	CATG	3 cut(s)	256, 391, 472
Kzo9I	GATC	1 cut(s)	124
LmnI	GCTCC	1 cut(s)	580
LpnPI	CCDG	6 cut(s)	11, 137, 144, 324, 551, 573
Lsp1109I	GCAGC	2 cut(s)	70, 224
LweI	GCATC	2 cut(s)	513, 535
MaeI	CTAG	1 cut(s)	489
MaeIII	GTNAC	2 cut(s)	273, 335
MalI	GATC	1 cut(s)	126
MboI	GATC	1 cut(s)	124
MboII	GAAGA	5 cut(s)	119, 134, 326, 335, 583
MflI	RGATCY	1 cut(s)	124
MhlI	GDGCHC	2 cut(s)	429, 585
MluCI	AATT	6 cut(s)	36, 96, 306, 318, 482, 505
MlyI	GAGTC	1 cut(s)	465
MmeI	TCCRAC	1 cut(s)	46
MnlI	CCTC	4 cut(s)	178, 212, 470, 571
Mph1103I	ATGCAT	1 cut(s)	528
MroXI	GAANNNNTTC	1 cut(s)	126
MseI	TTAA	4 cut(s)	140, 242, 357, 377
MslI	CAYNNNNRTG	1 cut(s)	449
MwoI	GCNNNNNNNGC	3 cut(s)	234, 509, 523
NdeI	CATATG	1 cut(s)	287
NdeII	GATC	1 cut(s)	124
NlaIII	CATG	3 cut(s)	256, 391, 472
NlaIV	GGNNCC	1 cut(s)	426
NmeAIII	GCCGAG	1 cut(s)	287
NmuCI	GTSAC	1 cut(s)	335
NsiI	ATGCAT	1 cut(s)	528
NspI	RCATGY	2 cut(s)	256, 391
PciI	ACATGT	1 cut(s)	387
PdmI	GAANNNNTTC	1 cut(s)	126
PfeI	GAWTC	1 cut(s)	280
PkrI	GCNGC	2 cut(s)	60, 239
PleI	GAGTC	1 cut(s)	464
PpsI	GAGTC	1 cut(s)	464
PscI	ACATGT	1 cut(s)	387
Psp124BI	GAGCTC	1 cut(s)	585
PspN4I	GGNNCC	1 cut(s)	426
PspPI	GGNCC	1 cut(s)	187
PsuI	RGATCY	1 cut(s)	124
RsaI	GTAC	3 cut(s)	353, 480, 557
RsaNI	GTAC	3 cut(s)	352, 479, 556
RseI	CAYNNNNRTG	1 cut(s)	449
SacI	GAGCTC	1 cut(s)	585
SaqAI	TTAA	4 cut(s)	140, 242, 357, 377
SatI	GCNGC	2 cut(s)	59, 238
Sau3AI	GATC	1 cut(s)	124
Sau96I	GGNCC	1 cut(s)	187
ScaI	AGTACT	1 cut(s)	353
SchI	GAGTC	1 cut(s)	465
SduI	GDGCHC	2 cut(s)	429, 585
SetI	ASST	9 cut(s)	63, 216, 297, 333, 376, 453, 490, 494, 585
SfaNI	GCATC	2 cut(s)	513, 535
SinI	GGWCC	1 cut(s)	187
SmiMI	CAYNNNNRTG	1 cut(s)	449
Sse9I	AATT	6 cut(s)	36, 96, 306, 318, 482, 505
SspMI	CTAG	1 cut(s)	489
SstI	GAGCTC	1 cut(s)	585
TaqI	TCGA	3 cut(s)	392, 462, 521
TasI	AATT	6 cut(s)	36, 96, 306, 318, 482, 505
TatI	WGTACW	3 cut(s)	351, 478, 555
TfiI	GAWTC	1 cut(s)	280
Tru1I	TTAA	4 cut(s)	140, 242, 357, 377
Tru9I	TTAA	4 cut(s)	140, 242, 357, 377
TscAI	CASTG	1 cut(s)	570
TseFI	GTSAC	1 cut(s)	335
TseI	GCWGC	2 cut(s)	58, 237
Tsp45I	GTSAC	1 cut(s)	335
TspDTI	ATGAA	1 cut(s)	318
TspGWI	ACGGA	1 cut(s)	292
TspRI	CASTG	1 cut(s)	570
VpaK11BI	GGWCC	1 cut(s)	187
XapI	RAATTY	1 cut(s)	306
XceI	RCATGY	2 cut(s)	256, 391
XmnI	GAANNNNTTC	1 cut(s)	126
XspI	CTAG	1 cut(s)	489
ZrmI	AGTACT	1 cut(s)	353
Zsp2I	ATGCAT	1 cut(s)	528

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.