AT2G01640

Ribosome biogenesis protein SLX9

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0006226
Physical Location & Seq
Forward (+)
282830 .. 284598
1769 bp
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UTR
Exon/CDS
Intron
AT2G01640.2

Sequence Viewer

Length: 471 bp
ATGGGCAAACCAAGCAAAGGATCGGAAGTGACAACGAAGTCTGATAAGAAGTTTGAGAAGAAGCTTCAATTTTACACAAAGGTCAAAGATACAGTTACTTCTTTGTCTGTCCAAAAGGAGATTGGCAAGAAGAAGAAAATCCGCAGCCGACAAAAGAAGCTAAAGGCGTATGATCTCACCAACCTGTCGGAGTTTCTTCCCGAGTTCAATGCTCTGCAGAAATCAGCTCTTCCTGCACCCGAGCTGAAAATGAACTGTAAAAGGCGACAAAAGCTCGTATTGACAGAAGGGGAGAGATTGAATAAGGTTCTAGACCATCCAGCTTTTCAAGCTGATCCAGTTGGTTCGATATTTCAGCACTTGCTGAGTCAACAGCCACCGGTGGAAGAGAAACCGAAGAAGAAGACTAACACTAATGGAAGCAAGAAAAGGAATAAGAAAAAAGGAAAGACTGATTCCATGGATTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SLX9

Protein Analysis

156

Amino Acids

17.82

Weight (kDa)

10.1

Isoelectric Point (pI)

44.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SLX9 PF15341 9 - 121 2.3e-11 Ribosome biogenesis protein SLX9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 37
AciI CCGC 1 cut(s) 142
AclWI GGATC 2 cut(s) 28, 329
AfiI CCNNNNNNNGG 1 cut(s) 17
AgeI ACCGGT 1 cut(s) 379
AgsI TTSAA 4 cut(s) 68, 208, 301, 329
AluBI AGCT 7 cut(s) 64, 160, 227, 244, 274, 323, 332
AluI AGCT 7 cut(s) 64, 160, 227, 244, 274, 323, 332
AlwI GGATC 2 cut(s) 28, 329
Ama87I CYCGRG 2 cut(s) 200, 239
ApeKI GCWGC 1 cut(s) 144
AsiGI ACCGGT 1 cut(s) 379
AsuHPI GGTGA 1 cut(s) 169
AvaI CYCGRG 2 cut(s) 200, 239
BbsI GAAGAC 1 cut(s) 410
BbvI GCAGC 1 cut(s) 156
BccI CCATC 1 cut(s) 324
BcgI CGANNNNNNTGC 2 cut(s) 191, 225
BfaI CTAG 1 cut(s) 311
BfmI CTRYAG 1 cut(s) 215
BisI GCNGC 1 cut(s) 145
BlsI GCNGC 1 cut(s) 146
BmeT110I CYCGRG 2 cut(s) 200, 239
BpiI GAAGAC 1 cut(s) 410
BsaJI CCNNGG 1 cut(s) 459
BsaWI WCCGGW 1 cut(s) 379
Bsc4I CCNNNNNNNGG 1 cut(s) 17
Bse118I RCCGGY 1 cut(s) 379
Bse1I ACTGG 1 cut(s) 338
BseDI CCNNGG 1 cut(s) 459
BseGI GGATG 1 cut(s) 316
BseLI CCNNNNNNNGG 1 cut(s) 17
BseMII CTCAG 1 cut(s) 356
BseNI ACTGG 1 cut(s) 338
BseXI GCAGC 1 cut(s) 156
BsgI GTGCAG 1 cut(s) 219
BshTI ACCGGT 1 cut(s) 379
BsiHKCI CYCGRG 2 cut(s) 200, 239
BsiSI CCGG 1 cut(s) 380
BslI CCNNNNNNNGG 1 cut(s) 17
BsoBI CYCGRG 2 cut(s) 200, 239
Bsp143I GATC 3 cut(s) 20, 172, 334
Bsp19I CCATGG 1 cut(s) 459
BspACI CCGC 1 cut(s) 142
BspCNI CTCAG 1 cut(s) 357
BspMAI CTGCAG 1 cut(s) 219
BspPI GGATC 2 cut(s) 28, 329
BspQI GCTCTTC 1 cut(s) 234
BsrFI RCCGGY 1 cut(s) 379
BsrI ACTGG 1 cut(s) 338
BssAI RCCGGY 1 cut(s) 379
BssECI CCNNGG 1 cut(s) 459
BssMI GATC 3 cut(s) 20, 172, 334
BssT1I CCWWGG 1 cut(s) 459
Bst4CI ACNGT 2 cut(s) 94, 257
Bst6I CTCTTC 2 cut(s) 234, 381
BstDEI CTNAG 1 cut(s) 365
BstDSI CCRYGG 1 cut(s) 459
BstF5I GGATG 1 cut(s) 316
BstKTI GATC 3 cut(s) 23, 175, 337
BstMBI GATC 3 cut(s) 20, 172, 334
BstMWI GCNNNNNNNGC 4 cut(s) 12, 233, 271, 329
BstSFI CTRYAG 1 cut(s) 215
BstV1I GCAGC 1 cut(s) 156
BstV2I GAAGAC 1 cut(s) 410
BtgI CCRYGG 1 cut(s) 459
BtsCI GGATG 1 cut(s) 316
Cfr10I RCCGGY 1 cut(s) 379
CspAI ACCGGT 1 cut(s) 379
CviAII CATG 1 cut(s) 460
CviJI RGCY 9 cut(s) 64, 147, 160, 227, 244, 274, 323, 332, 376
CviKI_1 RGCY 9 cut(s) 64, 147, 160, 227, 244, 274, 323, 332, 376
DdeI CTNAG 1 cut(s) 365
DpnI GATC 3 cut(s) 22, 174, 336
DpnII GATC 3 cut(s) 20, 172, 334
DrdI GACNNNNNNGTC 1 cut(s) 37
DseDI GACNNNNNNGTC 1 cut(s) 37
Eam1104I CTCTTC 2 cut(s) 234, 381
EarI CTCTTC 2 cut(s) 234, 381
Eco130I CCWWGG 1 cut(s) 459
Eco88I CYCGRG 2 cut(s) 200, 239
EcoT14I CCWWGG 1 cut(s) 459
ErhI CCWWGG 1 cut(s) 459
FaeI CATG 1 cut(s) 463
FaiI YATR 2 cut(s) 171, 461
FatI CATG 1 cut(s) 459
Fnu4HI GCNGC 1 cut(s) 145
FokI GGATG 1 cut(s) 303
Fsp4HI GCNGC 1 cut(s) 145
FspBI CTAG 1 cut(s) 311
GluI GCNGC 1 cut(s) 145
HapII CCGG 1 cut(s) 380
Hin1II CATG 1 cut(s) 463
HincII GTYRAC 1 cut(s) 371
HindII GTYRAC 1 cut(s) 371
HindIII AAGCTT 1 cut(s) 62
HinfI GANTC 2 cut(s) 367, 455
HpaII CCGG 1 cut(s) 380
HphI GGTGA 1 cut(s) 169
Hpy166II GTNNAC 1 cut(s) 371
Hpy188I TCNGA 4 cut(s) 25, 43, 190, 470
Hpy188III TCNNGA 2 cut(s) 200, 311
Hpy8I GTNNAC 1 cut(s) 371
HpyAV CCTTC 1 cut(s) 281
HpyCH4III ACNGT 2 cut(s) 94, 257
HpyCH4V TGCA 2 cut(s) 217, 236
HpyF10VI GCNNNNNNNGC 4 cut(s) 12, 233, 271, 329
HpyF3I CTNAG 1 cut(s) 365
Hsp92II CATG 1 cut(s) 463
Kzo9I GATC 3 cut(s) 20, 172, 334
LguI GCTCTTC 1 cut(s) 234
LpnPI CCDG 5 cut(s) 197, 246, 333, 351, 393
Lsp1109I GCAGC 1 cut(s) 156
MaeI CTAG 1 cut(s) 311
MaeIII GTNAC 2 cut(s) 28, 94
MalI GATC 3 cut(s) 22, 174, 336
MboI GATC 3 cut(s) 20, 172, 334
MboII GAAGA 9 cut(s) 70, 142, 145, 188, 221, 398, 409, 412, 415
MluCI AATT 1 cut(s) 68
MlyI GAGTC 1 cut(s) 376
MmeI TCCRAC 1 cut(s) 168
MspI CCGG 1 cut(s) 380
MwoI GCNNNNNNNGC 4 cut(s) 12, 233, 271, 329
NcoI CCATGG 1 cut(s) 459
NdeII GATC 3 cut(s) 20, 172, 334
NlaIII CATG 1 cut(s) 463
NmuCI GTSAC 1 cut(s) 28
PciSI GCTCTTC 1 cut(s) 234
PfeI GAWTC 1 cut(s) 455
PinAI ACCGGT 1 cut(s) 379
PkrI GCNGC 1 cut(s) 146
PleI GAGTC 1 cut(s) 375
PpsI GAGTC 1 cut(s) 375
PstI CTGCAG 1 cut(s) 219
SapI GCTCTTC 1 cut(s) 234
SatI GCNGC 1 cut(s) 145
Sau3AI GATC 3 cut(s) 20, 172, 334
SchI GAGTC 1 cut(s) 376
SfcI CTRYAG 1 cut(s) 215
SgrAI CRCCGGYG 1 cut(s) 379
Sse9I AATT 1 cut(s) 68
SsiI CCGC 1 cut(s) 142
SspMI CTAG 1 cut(s) 311
StyI CCWWGG 1 cut(s) 459
TaaI ACNGT 2 cut(s) 94, 257
TaqI TCGA 1 cut(s) 347
TasI AATT 1 cut(s) 68
TfiI GAWTC 1 cut(s) 455
TseFI GTSAC 1 cut(s) 28
TseI GCWGC 1 cut(s) 144
Tsp45I GTSAC 1 cut(s) 28
TspDTI ATGAA 1 cut(s) 266
XbaI TCTAGA 1 cut(s) 310
XcmI CCANNNNNNNNNTGG 1 cut(s) 119
XspI CTAG 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.