MD05G1087800.v1.1

Ribosome biogenesis protein SLX9

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
OG0006226
Physical Location & Seq
Forward (+)
18824391 .. 18824883
493 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1087800.v1.1.491

Sequence Viewer

Length: 396 bp
ATGCTAATGAGTGAATTTCACTTGTACCAGAAGAAGAAATTTCATATCCGACGGAAGAAACTGAATGCATATGATATCTCTTCCCTCTCAGAGTTTCTGCCTGAGTTGAAGGATTCACTAGAACTAACTCCCGCTGCAAAGTTCAAGCTAATATTGAAGGAAGGAAAGCGTCTGAGTGCACTTGTTAATCATCCTGCTTTCCAGGCGGATCCGCTTGGTGCAATTTATCAAGACATAATAAGCACACAGCCTGCGGTGGATGAGAAACCGAATGAAAGGAACAAATGTAGAAGCAAGAAGAGGAATCAGAAGAAATCTGAGGCTCCAGCCGGGCACCAATCTATGGATTTTCATCTATCGACCTTGAACCGTGGAATTTCATCCATCCACCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SLX9

Protein Analysis

132

Amino Acids

15.0

Weight (kDa)

9.78

Isoelectric Point (pI)

51.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 333
AccB7I CCANNNNNTGG 1 cut(s) 343
AciI CCGC 4 cut(s) 132, 206, 212, 254
AclWI GGATC 2 cut(s) 203, 216
AcsI RAATTY 3 cut(s) 14, 38, 375
AfaI GTAC 1 cut(s) 26
AfiI CCNNNNNNNGG 1 cut(s) 343
AgsI TTSAA 4 cut(s) 109, 145, 157, 367
AjnI CCWGG 1 cut(s) 201
AluBI AGCT 1 cut(s) 148
AluI AGCT 1 cut(s) 148
Alw21I GWGCWC 1 cut(s) 181
Alw44I GTGCAC 1 cut(s) 177
AlwI GGATC 2 cut(s) 203, 216
ApaLI GTGCAC 1 cut(s) 177
ApeKI GCWGC 1 cut(s) 134
ApoI RAATTY 3 cut(s) 14, 38, 375
AsuC2I CCSGG 1 cut(s) 331
BaeGI GKGCMC 2 cut(s) 181, 336
BamHI GGATCC 1 cut(s) 208
BanI GGYRCC 1 cut(s) 333
Bbv12I GWGCWC 1 cut(s) 181
BbvI GCAGC 1 cut(s) 121
BccI CCATC 1 cut(s) 392
BciT130I CCWGG 1 cut(s) 203
BcnI CCSGG 1 cut(s) 331
BfaI CTAG 1 cut(s) 119
BisI GCNGC 1 cut(s) 135
BlsI GCNGC 1 cut(s) 136
Bme1390I CCNGG 2 cut(s) 203, 331
BmiI GGNNCC 3 cut(s) 210, 324, 335
BmrFI CCNGG 2 cut(s) 203, 331
BpmI CTGGAG 1 cut(s) 309
BpuMI CCSGG 1 cut(s) 331
BsaBI GATNNNNATC 1 cut(s) 351
BsaJI CCNNGG 1 cut(s) 370
Bsc4I CCNNNNNNNGG 1 cut(s) 343
Bse8I GATNNNNATC 1 cut(s) 351
BseBI CCWGG 1 cut(s) 203
BseDI CCNNGG 1 cut(s) 370
BseGI GGATG 4 cut(s) 190, 265, 380, 384
BseJI GATNNNNATC 1 cut(s) 351
BseLI CCNNNNNNNGG 1 cut(s) 343
BseMII CTCAG 4 cut(s) 93, 102, 164, 309
BseSI GKGCMC 2 cut(s) 181, 336
BseXI GCAGC 1 cut(s) 121
BshNI GGYRCC 1 cut(s) 333
BsiHKAI GWGCWC 1 cut(s) 181
BsiSI CCGG 1 cut(s) 330
BslI CCNNNNNNNGG 1 cut(s) 343
BsmI GAATGC 1 cut(s) 70
Bsp1286I GDGCHC 2 cut(s) 181, 336
Bsp143I GATC 1 cut(s) 208
BspACI CCGC 4 cut(s) 132, 206, 212, 254
BspCNI CTCAG 4 cut(s) 94, 101, 165, 310
BspLI GGNNCC 3 cut(s) 210, 324, 335
BspPI GGATC 2 cut(s) 203, 216
BspT107I GGYRCC 1 cut(s) 333
BssECI CCNNGG 1 cut(s) 370
BssMI GATC 1 cut(s) 208
Bst2UI CCWGG 1 cut(s) 203
Bst4CI ACNGT 1 cut(s) 371
Bst6I CTCTTC 2 cut(s) 85, 293
BstC8I GCNNGC 1 cut(s) 252
BstDEI CTNAG 4 cut(s) 88, 102, 173, 318
BstDSI CCRYGG 1 cut(s) 370
BstF5I GGATG 4 cut(s) 190, 265, 380, 384
BstKTI GATC 1 cut(s) 211
BstMBI GATC 1 cut(s) 208
BstMWI GCNNNNNNNGC 1 cut(s) 203
BstNI CCWGG 1 cut(s) 203
BstSCI CCNGG 2 cut(s) 201, 329
BstSLI GKGCMC 2 cut(s) 181, 336
BstV1I GCAGC 1 cut(s) 121
BstX2I RGATCY 1 cut(s) 208
BstYI RGATCY 1 cut(s) 208
BtgI CCRYGG 1 cut(s) 370
BtsCI GGATG 4 cut(s) 190, 265, 380, 384
Cac8I GCNNGC 1 cut(s) 252
CseI GACGC 1 cut(s) 158
Csp6I GTAC 1 cut(s) 25
CviJI RGCY 4 cut(s) 148, 250, 323, 329
CviKI_1 RGCY 4 cut(s) 148, 250, 323, 329
CviQI GTAC 1 cut(s) 25
DdeI CTNAG 4 cut(s) 88, 102, 173, 318
DpnI GATC 1 cut(s) 210
DpnII GATC 1 cut(s) 208
Eam1104I CTCTTC 2 cut(s) 85, 293
EarI CTCTTC 2 cut(s) 85, 293
EciI GGCGGA 1 cut(s) 221
Eco32I GATATC 1 cut(s) 76
EcoRII CCWGG 1 cut(s) 201
EcoRV GATATC 1 cut(s) 76
EcoT22I ATGCAT 1 cut(s) 70
FaiI YATR 5 cut(s) 45, 70, 72, 236, 344
FauI CCCGC 1 cut(s) 139
FauNDI CATATG 1 cut(s) 70
Fnu4HI GCNGC 1 cut(s) 135
FokI GGATG 4 cut(s) 177, 272, 367, 371
Fsp4HI GCNGC 1 cut(s) 135
FspBI CTAG 1 cut(s) 119
GluI GCNGC 1 cut(s) 135
GsuI CTGGAG 1 cut(s) 309
HapII CCGG 1 cut(s) 330
HgaI GACGC 1 cut(s) 158
HinfI GANTC 2 cut(s) 113, 304
HpaII CCGG 1 cut(s) 330
Hpy166II GTNNAC 1 cut(s) 179
Hpy188I TCNGA 5 cut(s) 50, 91, 174, 309, 319
Hpy188III TCNNGA 1 cut(s) 230
Hpy8I GTNNAC 1 cut(s) 179
Hpy99I CGWCG 1 cut(s) 54
HpyAV CCTTC 3 cut(s) 103, 151, 155
HpyCH4III ACNGT 1 cut(s) 371
HpyCH4V TGCA 4 cut(s) 68, 137, 179, 221
HpyF10VI GCNNNNNNNGC 1 cut(s) 203
HpyF3I CTNAG 4 cut(s) 88, 102, 173, 318
Kzo9I GATC 1 cut(s) 208
LmnI GCTCC 1 cut(s) 328
LpnPI CCDG 8 cut(s) 41, 114, 188, 207, 215, 264, 339, 343
Lsp1109I GCAGC 1 cut(s) 121
MaeI CTAG 1 cut(s) 119
MalI GATC 1 cut(s) 210
MboI GATC 1 cut(s) 208
MboII GAAGA 6 cut(s) 43, 46, 67, 72, 310, 322
MflI RGATCY 1 cut(s) 208
MhlI GDGCHC 2 cut(s) 181, 336
MluCI AATT 4 cut(s) 14, 38, 222, 375
MmeI TCCRAC 1 cut(s) 73
MnlI CCTC 3 cut(s) 95, 294, 313
Mph1103I ATGCAT 1 cut(s) 70
MseI TTAA 1 cut(s) 186
MspA1I CMGCKG 1 cut(s) 134
MspI CCGG 1 cut(s) 330
MspR9I CCNGG 2 cut(s) 203, 331
Mva1269I GAATGC 1 cut(s) 70
MvaI CCWGG 1 cut(s) 203
MwoI GCNNNNNNNGC 1 cut(s) 203
NciI CCSGG 1 cut(s) 331
NdeI CATATG 1 cut(s) 70
NdeII GATC 1 cut(s) 208
NlaIV GGNNCC 3 cut(s) 210, 324, 335
NsiI ATGCAT 1 cut(s) 70
PctI GAATGC 1 cut(s) 70
PfeI GAWTC 2 cut(s) 113, 304
PflMI CCANNNNNTGG 1 cut(s) 343
PkrI GCNGC 1 cut(s) 136
Psp6I CCWGG 1 cut(s) 201
PspGI CCWGG 1 cut(s) 201
PspN4I GGNNCC 3 cut(s) 210, 324, 335
PsuI RGATCY 1 cut(s) 208
RsaI GTAC 1 cut(s) 26
RsaNI GTAC 1 cut(s) 25
SaqAI TTAA 1 cut(s) 186
SatI GCNGC 1 cut(s) 135
Sau3AI GATC 1 cut(s) 208
ScrFI CCNGG 2 cut(s) 203, 331
SduI GDGCHC 2 cut(s) 181, 336
SetI ASST 3 cut(s) 150, 365, 393
Sse9I AATT 4 cut(s) 14, 38, 222, 375
SsiI CCGC 4 cut(s) 132, 206, 212, 254
SspI AATATT 1 cut(s) 153
SspMI CTAG 1 cut(s) 119
StyD4I CCNGG 2 cut(s) 201, 329
TaaI ACNGT 1 cut(s) 371
TaqI TCGA 1 cut(s) 359
TasI AATT 4 cut(s) 14, 38, 222, 375
TfiI GAWTC 2 cut(s) 113, 304
Tru1I TTAA 1 cut(s) 186
Tru9I TTAA 1 cut(s) 186
TseI GCWGC 1 cut(s) 134
TspDTI ATGAA 4 cut(s) 32, 288, 341, 369
TspGWI ACGGA 1 cut(s) 67
Van91I CCANNNNNTGG 1 cut(s) 343
VneI GTGCAC 1 cut(s) 177
XapI RAATTY 3 cut(s) 14, 38, 375
XspI CTAG 1 cut(s) 119
Zsp2I ATGCAT 1 cut(s) 70
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.