MD08G1229200.v1.1

Ribosome biogenesis protein SLX9

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0006226
Physical Location & Seq
Reverse (-)
29528362 .. 29531385
3024 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1229200.v1.1.491

Sequence Viewer

Length: 402 bp
ATGCTAGTTAGAGATGCAGTTTCTTCCTTGGGTGCACAGAAGGCTATTGTTAAGAAGAAGAAACTACGTAGTCGACAGAAGAAACTGAAAGCATATGATCTCTCTTCTTTCTCAGAATTCCTTCCGGAGTTGAAGGAAAAGCGACCCACTCCTGTTTCGGAGTTGAAGATAAATTGTAAATCCAAGAAAAAGCTAGTATTGAAGGAAGGAAAGCAGTTGACTACAGTTCTTAATCATCCCACTTTCAAGTCAAATCCCTTAGCTGCCATTCATCAGCACTTGCAGAGTACTCGGCCAGTCGTAGATGTCAAGCCAGTGAAAAGGAAAAACAAAAGTGGAAGCAAGAAGAGGAAAGAAAAGAAATCTAAGGCGTCGGTCGGACCCCAAGCTATGGATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SLX9

Protein Analysis

134

Amino Acids

14.99

Weight (kDa)

10.56

Isoelectric Point (pI)

43.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SLX9 PF15341 16 - 97 7.3e-10 Ribosome biogenesis protein SLX9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 391
AccI GTMKAC 1 cut(s) 73
AccIII TCCGGA 1 cut(s) 124
AcoI YGGCCR 1 cut(s) 293
AcsI RAATTY 1 cut(s) 116
AcyI GRCGYC 1 cut(s) 371
AfaI GTAC 1 cut(s) 289
AfiI CCNNNNNNNGG 1 cut(s) 391
AgsI TTSAA 4 cut(s) 133, 166, 202, 247
AluBI AGCT 3 cut(s) 193, 263, 389
AluI AGCT 3 cut(s) 193, 263, 389
Alw21I GWGCWC 1 cut(s) 37
Alw44I GTGCAC 1 cut(s) 33
Aor13HI TCCGGA 1 cut(s) 124
AoxI GGCC 1 cut(s) 293
ApaLI GTGCAC 1 cut(s) 33
ApeKI GCWGC 1 cut(s) 263
ApoI RAATTY 1 cut(s) 116
Asp700I GAANNNNTTC 1 cut(s) 120
AspS9I GGNCC 1 cut(s) 380
AvaII GGWCC 1 cut(s) 380
BaeGI GKGCMC 1 cut(s) 37
Bbv12I GWGCWC 1 cut(s) 37
BbvI GCAGC 1 cut(s) 250
BcgI CGANNNNNNTGC 2 cut(s) 272, 306
BfaI CTAG 2 cut(s) 5, 194
BfmI CTRYAG 1 cut(s) 222
BisI GCNGC 1 cut(s) 264
BlsI GCNGC 1 cut(s) 265
BmcAI AGTACT 1 cut(s) 289
Bme18I GGWCC 1 cut(s) 380
BmgT120I GGNCC 1 cut(s) 380
BmiI GGNNCC 1 cut(s) 382
BmsI GCATC 1 cut(s) 4
Bpu10I CCTNAGC 1 cut(s) 259
BsaAI YACGTR 1 cut(s) 68
BsaHI GRCGYC 1 cut(s) 371
BsaJI CCNNGG 1 cut(s) 27
BsaWI WCCGGW 1 cut(s) 124
Bsc4I CCNNNNNNNGG 1 cut(s) 391
Bse1I ACTGG 2 cut(s) 296, 314
BseAI TCCGGA 1 cut(s) 124
BseDI CCNNGG 1 cut(s) 27
BseGI GGATG 1 cut(s) 235
BseLI CCNNNNNNNGG 1 cut(s) 391
BseMII CTCAG 1 cut(s) 126
BseNI ACTGG 2 cut(s) 296, 314
BseSI GKGCMC 1 cut(s) 37
BseXI GCAGC 1 cut(s) 250
Bsh1285I CGRYCG 1 cut(s) 378
BshFI GGCC 1 cut(s) 295
BsiEI CGRYCG 1 cut(s) 378
BsiHKAI GWGCWC 1 cut(s) 37
BsiSI CCGG 1 cut(s) 125
BslI CCNNNNNNNGG 1 cut(s) 391
BsnI GGCC 1 cut(s) 295
Bsp1286I GDGCHC 1 cut(s) 37
Bsp13I TCCGGA 1 cut(s) 124
Bsp143I GATC 1 cut(s) 97
BspANI GGCC 1 cut(s) 295
BspCNI CTCAG 1 cut(s) 125
BspEI TCCGGA 1 cut(s) 124
BspLI GGNNCC 1 cut(s) 382
BsrI ACTGG 2 cut(s) 296, 314
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 1 cut(s) 97
BssNI GRCGYC 1 cut(s) 371
BssT1I CCWWGG 1 cut(s) 27
Bst4CI ACNGT 1 cut(s) 226
Bst6I CTCTTC 2 cut(s) 109, 341
BstACI GRCGYC 1 cut(s) 371
BstBAI YACGTR 1 cut(s) 68
BstDEI CTNAG 3 cut(s) 112, 259, 366
BstF5I GGATG 1 cut(s) 235
BstKTI GATC 1 cut(s) 100
BstMBI GATC 1 cut(s) 97
BstMCI CGRYCG 1 cut(s) 378
BstMWI GCNNNNNNNGC 1 cut(s) 41
BstSFI CTRYAG 1 cut(s) 222
BstSLI GKGCMC 1 cut(s) 37
BstSNI TACGTA 1 cut(s) 68
BstV1I GCAGC 1 cut(s) 250
BsuRI GGCC 1 cut(s) 295
BtsCI GGATG 1 cut(s) 235
BtsIMutI CAGTG 1 cut(s) 321
Cfr13I GGNCC 1 cut(s) 380
CseI GACGC 1 cut(s) 360
Csp6I GTAC 1 cut(s) 288
CviJI RGCY 6 cut(s) 44, 193, 263, 295, 313, 389
CviKI_1 RGCY 6 cut(s) 44, 193, 263, 295, 313, 389
CviQI GTAC 1 cut(s) 288
DdeI CTNAG 3 cut(s) 112, 259, 366
DpnI GATC 1 cut(s) 99
DpnII GATC 1 cut(s) 97
EaeI YGGCCR 1 cut(s) 293
Eam1104I CTCTTC 2 cut(s) 109, 341
EarI CTCTTC 2 cut(s) 109, 341
Eco105I TACGTA 1 cut(s) 68
Eco130I CCWWGG 1 cut(s) 27
Eco47I GGWCC 1 cut(s) 380
EcoRI GAATTC 1 cut(s) 116
EcoT14I CCWWGG 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 27
FaiI YATR 4 cut(s) 94, 96, 392, 398
FauNDI CATATG 1 cut(s) 94
FblI GTMKAC 1 cut(s) 73
Fnu4HI GCNGC 1 cut(s) 264
FokI GGATG 1 cut(s) 222
Fsp4HI GCNGC 1 cut(s) 264
FspBI CTAG 2 cut(s) 5, 194
GluI GCNGC 1 cut(s) 264
HaeIII GGCC 1 cut(s) 295
HapII CCGG 1 cut(s) 125
HgaI GACGC 1 cut(s) 360
Hin1I GRCGYC 1 cut(s) 371
HincII GTYRAC 2 cut(s) 74, 219
HindII GTYRAC 2 cut(s) 74, 219
HpaII CCGG 1 cut(s) 125
Hpy166II GTNNAC 3 cut(s) 35, 74, 219
Hpy188I TCNGA 3 cut(s) 115, 160, 380
Hpy188III TCNNGA 1 cut(s) 125
Hpy8I GTNNAC 3 cut(s) 35, 74, 219
Hpy99I CGWCG 1 cut(s) 376
HpyAV CCTTC 5 cut(s) 34, 127, 131, 196, 200
HpyCH4III ACNGT 1 cut(s) 226
HpyCH4IV ACGT 1 cut(s) 67
HpyCH4V TGCA 3 cut(s) 17, 35, 283
HpyF10VI GCNNNNNNNGC 1 cut(s) 41
HpyF3I CTNAG 3 cut(s) 112, 259, 366
HpySE526I ACGT 1 cut(s) 67
Hsp92I GRCGYC 1 cut(s) 371
Kpn2I TCCGGA 1 cut(s) 124
Kzo9I GATC 1 cut(s) 97
LpnPI CCDG 4 cut(s) 138, 165, 309, 327
Lsp1109I GCAGC 1 cut(s) 250
LweI GCATC 1 cut(s) 4
MaeI CTAG 2 cut(s) 5, 194
MaeII ACGT 1 cut(s) 67
MalI GATC 1 cut(s) 99
MboI GATC 1 cut(s) 97
MboII GAAGA 7 cut(s) 15, 67, 70, 91, 96, 178, 358
MhlI GDGCHC 1 cut(s) 37
MluCI AATT 2 cut(s) 116, 172
MmeI TCCRAC 1 cut(s) 358
MnlI CCTC 1 cut(s) 342
MroI TCCGGA 1 cut(s) 124
MroXI GAANNNNTTC 1 cut(s) 120
MseI TTAA 2 cut(s) 51, 231
MspI CCGG 1 cut(s) 125
MwoI GCNNNNNNNGC 1 cut(s) 41
NdeI CATATG 1 cut(s) 94
NdeII GATC 1 cut(s) 97
NlaIV GGNNCC 1 cut(s) 382
NmeAIII GCCGAG 1 cut(s) 271
PdmI GAANNNNTTC 1 cut(s) 120
PflMI CCANNNNNTGG 1 cut(s) 391
PkrI GCNGC 1 cut(s) 265
Ppu21I YACGTR 1 cut(s) 68
PspN4I GGNNCC 1 cut(s) 382
PspPI GGNCC 1 cut(s) 380
RsaI GTAC 1 cut(s) 289
RsaNI GTAC 1 cut(s) 288
SalI GTCGAC 1 cut(s) 72
SaqAI TTAA 2 cut(s) 51, 231
SatI GCNGC 1 cut(s) 264
Sau3AI GATC 1 cut(s) 97
Sau96I GGNCC 1 cut(s) 380
ScaI AGTACT 1 cut(s) 289
SduI GDGCHC 1 cut(s) 37
SetI ASST 4 cut(s) 70, 195, 265, 391
SfaNI GCATC 1 cut(s) 4
SfcI CTRYAG 1 cut(s) 222
SinI GGWCC 1 cut(s) 380
SnaBI TACGTA 1 cut(s) 68
Sse9I AATT 2 cut(s) 116, 172
SspMI CTAG 2 cut(s) 5, 194
StyI CCWWGG 1 cut(s) 27
TaaI ACNGT 1 cut(s) 226
TaiI ACGT 1 cut(s) 70
TaqI TCGA 1 cut(s) 73
TaqII GACCGA 1 cut(s) 364
TasI AATT 2 cut(s) 116, 172
TatI WGTACW 1 cut(s) 287
Tru1I TTAA 2 cut(s) 51, 231
Tru9I TTAA 2 cut(s) 51, 231
TscAI CASTG 1 cut(s) 321
TseI GCWGC 1 cut(s) 263
TspDTI ATGAA 1 cut(s) 260
TspRI CASTG 1 cut(s) 321
Van91I CCANNNNNTGG 1 cut(s) 391
VneI GTGCAC 1 cut(s) 33
VpaK11BI GGWCC 1 cut(s) 380
XapI RAATTY 1 cut(s) 116
XmiI GTMKAC 1 cut(s) 73
XmnI GAANNNNTTC 1 cut(s) 120
XspI CTAG 2 cut(s) 5, 194
ZrmI AGTACT 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.