MD15G1423200.v1.1

Ribosome biogenesis protein SLX9

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0006226
Physical Location & Seq
Reverse (-)
52455819 .. 52458954
3136 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1423200.v1.1.491

Sequence Viewer

Length: 477 bp
ATGGGGAAGCCAGGTTCACGATCAGAATCGTCGACCAAAGCAGACCGCAAGTTCGAAAAGAAGCTCGAATTTTATGCCAAGGTTAGAGATGCAGTTTCTTCCTTGGGTGCTCAGAAGGCTATTGTTAAGAAGAAGAAACTACGTAGCCGACAGAAGAAACTGAAGGCATATGATCTCTCTTCTTTTTCAGAATTCCTTCCTGAGCTGAAAGAGAAGCAACCCACTGCTGCTTCAGAGTTCAAGATAAATTGTAAATCCAAGAAAAAGCTAGTATTGAAGGAAGGAAAGCAGTTGACTACAGTTCTTAATCATCCCACTTTCAAGTCGAATCCCCTGGCTGCCATTCATCAACACTTACAGAGCACTCAGCCAGTCGAAGATGTCAAACCAGAGAAAAGGAAAAACAAAAGTGGAAGCAAGAAGAGGAAAGAAAAGAAATCTAAGGCATCAGCCGGACCCCAAGCTATGGATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SLX9

Protein Analysis

159

Amino Acids

17.79

Weight (kDa)

10.24

Isoelectric Point (pI)

46.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SLX9 PF15341 10 - 122 9.4e-12 Ribosome biogenesis protein SLX9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 466
AccI GTMKAC 1 cut(s) 32
AciI CCGC 1 cut(s) 46
AcsI RAATTY 2 cut(s) 68, 191
AcuI CTGAAG 2 cut(s) 182, 216
AfiI CCNNNNNNNGG 1 cut(s) 466
AgsI TTSAA 3 cut(s) 241, 277, 322
AjnI CCWGG 2 cut(s) 10, 333
AloI GAACNNNNNNTCC 1 cut(s) 30
AluBI AGCT 4 cut(s) 64, 205, 268, 464
AluI AGCT 4 cut(s) 64, 205, 268, 464
Alw21I GWGCWC 2 cut(s) 112, 365
ApeKI GCWGC 2 cut(s) 227, 338
ApoI RAATTY 2 cut(s) 68, 191
ArsI GACNNNNNNTTYG 2 cut(s) 35, 67
Asp700I GAANNNNTTC 1 cut(s) 195
AspS9I GGNCC 1 cut(s) 455
AsuII TTCGAA 1 cut(s) 54
AvaII GGWCC 1 cut(s) 455
Bbv12I GWGCWC 2 cut(s) 112, 365
BbvI GCAGC 2 cut(s) 214, 325
BcgI CGANNNNNNTGC 2 cut(s) 56, 90
BciT130I CCWGG 2 cut(s) 12, 335
BfaI CTAG 1 cut(s) 269
BfmI CTRYAG 1 cut(s) 297
BisI GCNGC 2 cut(s) 228, 339
BlsI GCNGC 2 cut(s) 229, 340
Bme1390I CCNGG 2 cut(s) 12, 335
Bme18I GGWCC 1 cut(s) 455
BmgT120I GGNCC 1 cut(s) 455
BmiI GGNNCC 1 cut(s) 457
BmrFI CCNGG 2 cut(s) 12, 335
BmsI GCATC 2 cut(s) 79, 455
Bpu10I CCTNAGC 1 cut(s) 201
Bpu14I TTCGAA 1 cut(s) 54
BsaAI YACGTR 1 cut(s) 143
BsaBI GATNNNNATC 1 cut(s) 25
BsaJI CCNNGG 3 cut(s) 78, 102, 333
Bsc4I CCNNNNNNNGG 1 cut(s) 466
Bse1I ACTGG 1 cut(s) 371
Bse8I GATNNNNATC 1 cut(s) 25
BseBI CCWGG 2 cut(s) 12, 335
BseDI CCNNGG 3 cut(s) 78, 102, 333
BseGI GGATG 1 cut(s) 310
BseJI GATNNNNATC 1 cut(s) 25
BseLI CCNNNNNNNGG 1 cut(s) 466
BseMII CTCAG 3 cut(s) 125, 192, 380
BseNI ACTGG 1 cut(s) 371
BseXI GCAGC 2 cut(s) 214, 325
BsiHKAI GWGCWC 2 cut(s) 112, 365
BsiSI CCGG 1 cut(s) 453
BslI CCNNNNNNNGG 1 cut(s) 466
Bsp119I TTCGAA 1 cut(s) 54
Bsp1286I GDGCHC 2 cut(s) 112, 365
Bsp143I GATC 2 cut(s) 20, 172
BspACI CCGC 1 cut(s) 46
BspCNI CTCAG 3 cut(s) 124, 193, 379
BspLI GGNNCC 1 cut(s) 457
BspT104I TTCGAA 1 cut(s) 54
BsrI ACTGG 1 cut(s) 371
BssECI CCNNGG 3 cut(s) 78, 102, 333
BssMI GATC 2 cut(s) 20, 172
BssT1I CCWWGG 2 cut(s) 78, 102
Bst2UI CCWGG 2 cut(s) 12, 335
Bst4CI ACNGT 1 cut(s) 301
Bst6I CTCTTC 2 cut(s) 184, 416
BstBAI YACGTR 1 cut(s) 143
BstBI TTCGAA 1 cut(s) 54
BstDEI CTNAG 4 cut(s) 111, 201, 366, 441
BstF5I GGATG 1 cut(s) 310
BstKTI GATC 2 cut(s) 23, 175
BstMBI GATC 2 cut(s) 20, 172
BstMWI GCNNNNNNNGC 1 cut(s) 116
BstNI CCWGG 2 cut(s) 12, 335
BstSCI CCNGG 2 cut(s) 10, 333
BstSFI CTRYAG 1 cut(s) 297
BstSNI TACGTA 1 cut(s) 143
BstV1I GCAGC 2 cut(s) 214, 325
BtsCI GGATG 1 cut(s) 310
BtsI GCAGTG 1 cut(s) 222
BtsIMutI CAGTG 1 cut(s) 222
Cfr13I GGNCC 1 cut(s) 455
DdeI CTNAG 4 cut(s) 111, 201, 366, 441
DpnI GATC 2 cut(s) 22, 174
DpnII GATC 2 cut(s) 20, 172
Eam1104I CTCTTC 2 cut(s) 184, 416
EarI CTCTTC 2 cut(s) 184, 416
Eco105I TACGTA 1 cut(s) 143
Eco130I CCWWGG 2 cut(s) 78, 102
Eco47I GGWCC 1 cut(s) 455
Eco57I CTGAAG 2 cut(s) 182, 216
EcoRI GAATTC 1 cut(s) 191
EcoRII CCWGG 2 cut(s) 10, 333
EcoT14I CCWWGG 2 cut(s) 78, 102
ErhI CCWWGG 2 cut(s) 78, 102
FaiI YATR 5 cut(s) 75, 169, 171, 467, 473
FauNDI CATATG 1 cut(s) 169
FblI GTMKAC 1 cut(s) 32
Fnu4HI GCNGC 2 cut(s) 228, 339
FokI GGATG 1 cut(s) 297
Fsp4HI GCNGC 2 cut(s) 228, 339
FspBI CTAG 1 cut(s) 269
GluI GCNGC 2 cut(s) 228, 339
HapII CCGG 1 cut(s) 453
HincII GTYRAC 2 cut(s) 33, 294
HindII GTYRAC 2 cut(s) 33, 294
HinfI GANTC 2 cut(s) 26, 328
HpaII CCGG 1 cut(s) 453
Hpy166II GTNNAC 3 cut(s) 17, 33, 294
Hpy188I TCNGA 4 cut(s) 25, 114, 190, 235
Hpy188III TCNNGA 3 cut(s) 18, 200, 241
Hpy8I GTNNAC 3 cut(s) 17, 33, 294
Hpy99I CGWCG 1 cut(s) 34
HpyAV CCTTC 5 cut(s) 109, 157, 206, 271, 275
HpyCH4III ACNGT 1 cut(s) 301
HpyCH4IV ACGT 1 cut(s) 142
HpyCH4V TGCA 1 cut(s) 92
HpyF10VI GCNNNNNNNGC 1 cut(s) 116
HpyF3I CTNAG 4 cut(s) 111, 201, 366, 441
HpySE526I ACGT 1 cut(s) 142
Kzo9I GATC 2 cut(s) 20, 172
LpnPI CCDG 7 cut(s) 24, 213, 320, 347, 384, 402, 466
Lsp1109I GCAGC 2 cut(s) 214, 325
LweI GCATC 2 cut(s) 79, 455
MaeI CTAG 1 cut(s) 269
MaeII ACGT 1 cut(s) 142
MalI GATC 2 cut(s) 22, 174
MboI GATC 2 cut(s) 20, 172
MboII GAAGA 7 cut(s) 90, 142, 145, 166, 171, 389, 433
MhlI GDGCHC 2 cut(s) 112, 365
MluCI AATT 3 cut(s) 68, 191, 247
MnlI CCTC 1 cut(s) 417
MroXI GAANNNNTTC 1 cut(s) 195
MseI TTAA 2 cut(s) 126, 306
MspI CCGG 1 cut(s) 453
MspR9I CCNGG 2 cut(s) 12, 335
MvaI CCWGG 2 cut(s) 12, 335
MwoI GCNNNNNNNGC 1 cut(s) 116
NdeI CATATG 1 cut(s) 169
NdeII GATC 2 cut(s) 20, 172
NlaIV GGNNCC 1 cut(s) 457
NspV TTCGAA 1 cut(s) 54
PdmI GAANNNNTTC 1 cut(s) 195
PfeI GAWTC 2 cut(s) 26, 328
PflMI CCANNNNNTGG 1 cut(s) 466
PkrI GCNGC 2 cut(s) 229, 340
Ppu21I YACGTR 1 cut(s) 143
Psp6I CCWGG 2 cut(s) 10, 333
PspGI CCWGG 2 cut(s) 10, 333
PspN4I GGNNCC 1 cut(s) 457
PspPI GGNCC 1 cut(s) 455
SalI GTCGAC 1 cut(s) 31
SaqAI TTAA 2 cut(s) 126, 306
SatI GCNGC 2 cut(s) 228, 339
Sau3AI GATC 2 cut(s) 20, 172
Sau96I GGNCC 1 cut(s) 455
ScrFI CCNGG 2 cut(s) 12, 335
SduI GDGCHC 2 cut(s) 112, 365
SetI ASST 7 cut(s) 16, 66, 84, 145, 207, 270, 466
SfaNI GCATC 2 cut(s) 79, 455
SfcI CTRYAG 1 cut(s) 297
SfuI TTCGAA 1 cut(s) 54
SinI GGWCC 1 cut(s) 455
SnaBI TACGTA 1 cut(s) 143
Sse9I AATT 3 cut(s) 68, 191, 247
SsiI CCGC 1 cut(s) 46
SspMI CTAG 1 cut(s) 269
StyD4I CCNGG 2 cut(s) 10, 333
StyI CCWWGG 2 cut(s) 78, 102
TaaI ACNGT 1 cut(s) 301
TaiI ACGT 1 cut(s) 145
TaqI TCGA 5 cut(s) 32, 54, 66, 326, 375
TasI AATT 3 cut(s) 68, 191, 247
TfiI GAWTC 2 cut(s) 26, 328
Tru1I TTAA 2 cut(s) 126, 306
Tru9I TTAA 2 cut(s) 126, 306
TscAI CASTG 1 cut(s) 229
TseI GCWGC 2 cut(s) 227, 338
TspDTI ATGAA 1 cut(s) 335
TspRI CASTG 1 cut(s) 229
Van91I CCANNNNNTGG 1 cut(s) 466
VpaK11BI GGWCC 1 cut(s) 455
XapI RAATTY 2 cut(s) 68, 191
XmiI GTMKAC 1 cut(s) 32
XmnI GAANNNNTTC 1 cut(s) 195
XspI CTAG 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.