Rorug07G0208700

Ribosome biogenesis protein SLX9

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0006226
Physical Location & Seq
Reverse (-)
18360939 .. 18362645
1707 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0208700.1

Sequence Viewer

Length: 1251 bp
ATGGCAGAAGAAACTCAGATCGAAGAAGAACAAGAAACTCAGTCCTTTCAAGTTTTGCTTACTCGAGCACGAAAACTTACGGCGATGGCTAGCTTTGCAGAAAACTGGAGGGATCTGAGCGGCAAGAACGACTGGGAGGGTCTACTAGACCCTCTCGACATCAATCTCCGCCGCTATATCATTCACTATGGTGAAAGGGCTGGAGCGACGATATCCGTGGTGAAGGAGCTAAAGTCGAAGAACTACAGACTTCCGCAATACGCAAAAGGACATTTGTTCCCAAAGGTGGGCTTGGAGAGTGGTAATCCATACAAGTACATGGTGAAAAAATATTTTTATGCAACTCATCTGGAACTTTCGCCCAAGAAATCAAACTTCCTGGGTTTTGTTGCGGTGACAACTGATGAAGGAACCAAAGTGCTAGGCCGGAGGGATGTCTTGATTTCATGGAGAGGAACCACATTGGTACATGAGTGGCTTGTTGACGTGAAGATCAATTTGGTCTCAGCTTCTCACATTCTGGGAGAGGAGAATGATCCTAAGGTGCACCAGGGTTGGCTTTCCTATTACACTGATATGGACCCTGAGTCCTCACACAATCAACTTACTAGTTCCAGAGATCAGGCTCTAGCTGCACTTAAAGAAGTACTTGATGAATACAAGGGTGATGAAATCAGCATTACTGTCACTGGTCACAGCATGGGTGCTGCACTCGCAATTCTAAATGCGTCTGATATTGTTCATAACGGATACAATAAAATGACAGATCAACCAAATAAGGTCATTCCTGTCACAGCTATTGTGTTTGCCTGCCCTCGTCTTGGAAACCAGGGTTTCAAAAATGTACTTTCTGGTCTTGAAAATCTTCACGTCTTGCGTGTCACAAATGACCAAGATATCGTCCCTAAAGCATCAGAATCGGTGGATTATGTTCATGTTGGAAAAGAGTTGAGAATCGACACTCTCAAGTCGCCGTTCTTGAAAGTTATTCCTGATACTAATGTCACAGAAAAACTTAACAATTTGCACGATCTGGAGGCTTACTTGCATGGAGTTGCAGGGACACAGGGGATCAAAAGTTCTGATTTCAAATTGGAAGTTGATCGTGATCTGGCACTGGTAAACAAGTTTATTGATGGCGTGAAGGATGAACATAATATAGTTGCTCAGTGGTGGACTGAGAAGAATAAGTCTATGATCCAAATGGATGATGGCTCTTGGGTGTTGGATGATCACGAGGAAGATGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SLX9

Protein Analysis

416

Amino Acids

46.95

Weight (kDa)

5.43

Isoelectric Point (pI)

30.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_3 PF01764 148 - 305 5.3e-33 Lipase (class 3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 120
AccI GTMKAC 1 cut(s) 142
AciI CCGC 5 cut(s) 120, 169, 172, 254, 392
AclWI GGATC 4 cut(s) 120, 530, 1079, 1192
AfaI GTAC 4 cut(s) 317, 468, 648, 846
AfiI CCNNNNNNNGG 3 cut(s) 286, 287, 821
AgsI TTSAA 5 cut(s) 50, 838, 860, 982, 1090
AhdI GACNNNNNGTC 1 cut(s) 586
AhlI ACTAGT 1 cut(s) 608
AjiI CACGTC 2 cut(s) 487, 871
AjnI CCWGG 3 cut(s) 378, 549, 828
AjuI GAANNNNNNNTTGG 2 cut(s) 482, 514
AleI CACNNNNGTG 1 cut(s) 189
AloI GAACNNNNNNTCC 2 cut(s) 1063, 1095
AluBI AGCT 5 cut(s) 93, 229, 509, 632, 797
AluI AGCT 5 cut(s) 93, 229, 509, 632, 797
Alw21I GWGCWC 2 cut(s) 70, 549
Alw26I GTCTC 1 cut(s) 508
Alw44I GTGCAC 1 cut(s) 545
AlwI GGATC 4 cut(s) 120, 530, 1079, 1192
Ama87I CYCGRG 1 cut(s) 63
AoxI GGCC 1 cut(s) 424
ApaLI GTGCAC 1 cut(s) 545
ApeKI GCWGC 2 cut(s) 632, 707
Asp700I GAANNNNTTC 1 cut(s) 864
AspS9I GGNCC 1 cut(s) 580
AsuHPI GGTGA 5 cut(s) 203, 232, 334, 406, 677
AsuNHI GCTAGC 1 cut(s) 89
AvaI CYCGRG 1 cut(s) 63
AvaII GGWCC 1 cut(s) 580
AxyI CCTNAGG 1 cut(s) 540
BaeGI GKGCMC 1 cut(s) 549
BaeI ACNNNNGTAYC 4 cut(s) 458, 491, 987, 1020
BauI CACGAG 1 cut(s) 1235
Bbv12I GWGCWC 2 cut(s) 70, 549
BbvI GCAGC 2 cut(s) 619, 694
BccI CCATC 3 cut(s) 79, 1130, 1205
BceAI ACGGC 2 cut(s) 96, 958
BcgI CGANNNNNNTGC 2 cut(s) 900, 934
BciT130I CCWGG 3 cut(s) 380, 551, 830
BciVI GTATCC 1 cut(s) 743
BclI TGATCA 1 cut(s) 1231
BcoDI GTCTC 1 cut(s) 508
BcuI ACTAGT 1 cut(s) 608
BfaI CTAG 5 cut(s) 90, 146, 422, 609, 629
BfmI CTRYAG 1 cut(s) 244
BfuI GTATCC 1 cut(s) 743
BisI GCNGC 4 cut(s) 121, 172, 633, 708
BlsI GCNGC 4 cut(s) 122, 173, 634, 709
BmcAI AGTACT 1 cut(s) 648
Bme1390I CCNGG 3 cut(s) 380, 551, 830
Bme18I GGWCC 1 cut(s) 580
BmeRI GACNNNNNGTC 1 cut(s) 586
BmeT110I CYCGRG 1 cut(s) 63
BmgBI CACGTC 2 cut(s) 487, 871
BmgT120I GGNCC 1 cut(s) 580
BmiI GGNNCC 3 cut(s) 412, 457, 582
BmrFI CCNGG 3 cut(s) 380, 551, 830
BmrI ACTGGG 1 cut(s) 142
BmsI GCATC 1 cut(s) 920
BmtI GCTAGC 1 cut(s) 93
BmuI ACTGGG 1 cut(s) 142
BpmI CTGGAG 3 cut(s) 127, 222, 1055
BpuEI CTTGAG 1 cut(s) 950
BsaBI GATNNNNATC 1 cut(s) 1107
BsaI GGTCTC 1 cut(s) 508
BsaJI CCNNGG 4 cut(s) 216, 379, 550, 829
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
Bsc4I CCNNNNNNNGG 3 cut(s) 286, 287, 821
Bse1I ACTGG 4 cut(s) 110, 137, 694, 1122
Bse21I CCTNAGG 1 cut(s) 540
Bse8I GATNNNNATC 1 cut(s) 1107
BseBI CCWGG 3 cut(s) 380, 551, 830
BseDI CCNNGG 4 cut(s) 216, 379, 550, 829
BseGI GGATG 4 cut(s) 439, 1153, 1213, 1234
BseJI GATNNNNATC 1 cut(s) 1107
BseLI CCNNNNNNNGG 3 cut(s) 286, 287, 821
BseMII CTCAG 7 cut(s) 29, 53, 107, 519, 576, 1170, 1181
BseNI ACTGG 4 cut(s) 110, 137, 694, 1122
BseRI GAGGAG 1 cut(s) 542
BseSI GKGCMC 1 cut(s) 549
BseXI GCAGC 2 cut(s) 619, 694
BsgI GTGCAG 2 cut(s) 618, 693
BshFI GGCC 1 cut(s) 426
BsiHKAI GWGCWC 2 cut(s) 70, 549
BsiHKCI CYCGRG 1 cut(s) 63
BsiSI CCGG 1 cut(s) 427
BslFI GGGAC 2 cut(s) 887, 1075
BslI CCNNNNNNNGG 3 cut(s) 286, 287, 821
BsmAI GTCTC 1 cut(s) 508
BsmFI GGGAC 2 cut(s) 887, 1075
BsnI GGCC 1 cut(s) 426
Bso31I GGTCTC 1 cut(s) 508
BsoBI CYCGRG 1 cut(s) 63
Bsp1286I GDGCHC 2 cut(s) 70, 549
BspACI CCGC 5 cut(s) 120, 169, 172, 254, 392
BspANI GGCC 1 cut(s) 426
BspCNI CTCAG 7 cut(s) 28, 52, 108, 518, 577, 1171, 1180
BspLI GGNNCC 3 cut(s) 412, 457, 582
BspOI GCTAGC 1 cut(s) 93
BspPI GGATC 4 cut(s) 120, 530, 1079, 1192
BspTNI GGTCTC 1 cut(s) 508
BsrBI CCGCTC 1 cut(s) 120
BsrI ACTGG 4 cut(s) 110, 137, 694, 1122
BssECI CCNNGG 4 cut(s) 216, 379, 550, 829
BssSI CACGAG 1 cut(s) 1235
Bst2BI CACGAG 1 cut(s) 1235
Bst2UI CCWGG 3 cut(s) 380, 551, 830
Bst4CI ACNGT 1 cut(s) 685
BstC8I GCNNGC 2 cut(s) 91, 811
BstDEI CTNAG 8 cut(s) 15, 39, 116, 505, 540, 585, 1167, 1179
BstDSI CCRYGG 1 cut(s) 216
BstF5I GGATG 4 cut(s) 439, 1153, 1213, 1234
BstMAI GTCTC 1 cut(s) 508
BstMWI GCNNNNNNNGC 3 cut(s) 95, 632, 713
BstNI CCWGG 3 cut(s) 380, 551, 830
BstSCI CCNGG 3 cut(s) 378, 549, 828
BstSFI CTRYAG 1 cut(s) 244
BstSLI GKGCMC 1 cut(s) 549
BstV1I GCAGC 2 cut(s) 619, 694
BstX2I RGATCY 1 cut(s) 112
BstYI RGATCY 1 cut(s) 112
Bsu36I CCTNAGG 1 cut(s) 540
BsuI GTATCC 1 cut(s) 743
BsuRI GGCC 1 cut(s) 426
BtgI CCRYGG 1 cut(s) 216
BtgZI GCGATG 1 cut(s) 98
BtrI CACGTC 2 cut(s) 487, 871
BtsCI GGATG 4 cut(s) 439, 1153, 1213, 1234
BtsIMutI CAGTG 4 cut(s) 570, 687, 1115, 1175
Cac8I GCNNGC 2 cut(s) 91, 811
Cfr13I GGNCC 1 cut(s) 580
CseI GACGC 1 cut(s) 717
Csp6I GTAC 4 cut(s) 316, 467, 647, 845
CviAII CATG 6 cut(s) 319, 447, 470, 700, 935, 1049
CviQI GTAC 4 cut(s) 316, 467, 647, 845
DdeI CTNAG 8 cut(s) 15, 39, 116, 505, 540, 585, 1167, 1179
DriI GACNNNNNGTC 1 cut(s) 586
Eam1105I GACNNNNNGTC 1 cut(s) 586
EciI GGCGGA 1 cut(s) 158
Eco31I GGTCTC 1 cut(s) 508
Eco32I GATATC 2 cut(s) 213, 898
Eco47I GGWCC 1 cut(s) 580
Eco81I CCTNAGG 1 cut(s) 540
Eco88I CYCGRG 1 cut(s) 63
EcoRII CCWGG 3 cut(s) 378, 549, 828
EcoRV GATATC 2 cut(s) 213, 898
FaeI CATG 6 cut(s) 322, 450, 473, 703, 938, 1052
FalI AAGNNNNNCTT 6 cut(s) 42, 74, 275, 307, 633, 665
FaqI GGGAC 2 cut(s) 887, 1075
FatI CATG 6 cut(s) 318, 446, 469, 699, 934, 1048
FbaI TGATCA 1 cut(s) 1231
FblI GTMKAC 1 cut(s) 142
Fnu4HI GCNGC 4 cut(s) 121, 172, 633, 708
FokI GGATG 4 cut(s) 446, 1160, 1220, 1241
Fsp4HI GCNGC 4 cut(s) 121, 172, 633, 708
FspBI CTAG 5 cut(s) 90, 146, 422, 609, 629
GluI GCNGC 4 cut(s) 121, 172, 633, 708
GsuI CTGGAG 3 cut(s) 127, 222, 1055
HaeIII GGCC 1 cut(s) 426
HapII CCGG 1 cut(s) 427
HgaI GACGC 1 cut(s) 717
Hin1II CATG 6 cut(s) 322, 450, 473, 703, 938, 1052
HincII GTYRAC 1 cut(s) 484
HindII GTYRAC 1 cut(s) 484
HinfI GANTC 3 cut(s) 587, 917, 954
HpaII CCGG 1 cut(s) 427
HphI GGTGA 5 cut(s) 203, 232, 334, 406, 677
Hpy166II GTNNAC 5 cut(s) 143, 484, 547, 1123, 1176
Hpy188I TCNGA 5 cut(s) 18, 117, 733, 916, 1084
Hpy8I GTNNAC 5 cut(s) 143, 484, 547, 1123, 1176
Hpy99I CGWCG 1 cut(s) 211
HpyAV CCTTC 3 cut(s) 217, 401, 1138
HpyCH4III ACNGT 1 cut(s) 685
HpyCH4IV ACGT 2 cut(s) 486, 870
HpyCH4V TGCA 8 cut(s) 98, 341, 547, 635, 710, 1027, 1048, 1058
HpyF10VI GCNNNNNNNGC 3 cut(s) 95, 632, 713
HpyF3I CTNAG 8 cut(s) 15, 39, 116, 505, 540, 585, 1167, 1179
HpySE526I ACGT 2 cut(s) 486, 870
Hsp92II CATG 6 cut(s) 322, 450, 473, 703, 938, 1052
Ksp22I TGATCA 1 cut(s) 1231
LmnI GCTCC 2 cut(s) 203, 226
Lsp1109I GCAGC 2 cut(s) 619, 694
LweI GCATC 1 cut(s) 920
MaeI CTAG 5 cut(s) 90, 146, 422, 609, 629
MaeII ACGT 2 cut(s) 486, 870
MaeIII GTNAC 6 cut(s) 394, 685, 692, 790, 880, 1003
MbiI CCGCTC 1 cut(s) 120
MboII GAAGA 7 cut(s) 20, 35, 38, 250, 502, 857, 1195
MflI RGATCY 1 cut(s) 112
MhlI GDGCHC 2 cut(s) 70, 549
MluCI AATT 4 cut(s) 496, 717, 1021, 1091
MlyI GAGTC 1 cut(s) 596
MmeI TCCRAC 2 cut(s) 919, 1206
MroXI GAANNNNTTC 1 cut(s) 864
MseI TTAA 2 cut(s) 639, 1017
MslI CAYNNNNRTG 2 cut(s) 189, 575
MspI CCGG 1 cut(s) 427
MspR9I CCNGG 3 cut(s) 380, 551, 830
MvaI CCWGG 3 cut(s) 380, 551, 830
MwoI GCNNNNNNNGC 3 cut(s) 95, 632, 713
NheI GCTAGC 1 cut(s) 89
NlaIII CATG 6 cut(s) 322, 450, 473, 703, 938, 1052
NlaIV GGNNCC 3 cut(s) 412, 457, 582
NmuCI GTSAC 6 cut(s) 394, 685, 692, 790, 880, 1003
OliI CACNNNNGTG 1 cut(s) 189
PaeR7I CTCGAG 1 cut(s) 63
PdmI GAANNNNTTC 1 cut(s) 864
PfeI GAWTC 2 cut(s) 917, 954
PkrI GCNGC 4 cut(s) 122, 173, 634, 709
PleI GAGTC 1 cut(s) 595
PpsI GAGTC 1 cut(s) 595
Psp6I CCWGG 3 cut(s) 378, 549, 828
PspGI CCWGG 3 cut(s) 378, 549, 828
PspN4I GGNNCC 3 cut(s) 412, 457, 582
PspPI GGNCC 1 cut(s) 580
PspXI VCTCGAGB 1 cut(s) 63
PsuI RGATCY 1 cut(s) 112
RsaI GTAC 4 cut(s) 317, 468, 648, 846
RsaNI GTAC 4 cut(s) 316, 467, 647, 845
RseI CAYNNNNRTG 2 cut(s) 189, 575
SaqAI TTAA 2 cut(s) 639, 1017
SatI GCNGC 4 cut(s) 121, 172, 633, 708
Sau96I GGNCC 1 cut(s) 580
ScaI AGTACT 1 cut(s) 648
SchI GAGTC 1 cut(s) 596
ScrFI CCNGG 3 cut(s) 380, 551, 830
SduI GDGCHC 2 cut(s) 70, 549
SfaNI GCATC 1 cut(s) 920
SfcI CTRYAG 1 cut(s) 244
Sfr274I CTCGAG 1 cut(s) 63
SinI GGWCC 1 cut(s) 580
SlaI CTCGAG 1 cut(s) 63
SmiMI CAYNNNNRTG 2 cut(s) 189, 575
SmlI CTYRAG 2 cut(s) 63, 965
SmoI CTYRAG 2 cut(s) 63, 965
SpeI ACTAGT 1 cut(s) 608
Sse9I AATT 4 cut(s) 496, 717, 1021, 1091
SsiI CCGC 5 cut(s) 120, 169, 172, 254, 392
SspI AATATT 1 cut(s) 332
SspMI CTAG 5 cut(s) 90, 146, 422, 609, 629
StyD4I CCNGG 3 cut(s) 378, 549, 828
TaaI ACNGT 1 cut(s) 685
TaiI ACGT 2 cut(s) 489, 873
TaqI TCGA 5 cut(s) 21, 64, 156, 236, 957
TasI AATT 4 cut(s) 496, 717, 1021, 1091
TatI WGTACW 3 cut(s) 315, 646, 844
TauI GCSGC 2 cut(s) 123, 174
TfiI GAWTC 2 cut(s) 917, 954
Tru1I TTAA 2 cut(s) 639, 1017
Tru9I TTAA 2 cut(s) 639, 1017
TscAI CASTG 4 cut(s) 577, 694, 1122, 1175
TseFI GTSAC 6 cut(s) 394, 685, 692, 790, 880, 1003
TseI GCWGC 2 cut(s) 632, 707
Tsp45I GTSAC 6 cut(s) 394, 685, 692, 790, 880, 1003
TspDTI ATGAA 7 cut(s) 420, 435, 669, 684, 731, 923, 1164
TspGWI ACGGA 2 cut(s) 205, 762
TspRI CASTG 4 cut(s) 577, 694, 1122, 1175
VneI GTGCAC 1 cut(s) 545
VpaK11BI GGWCC 1 cut(s) 580
XcmI CCANNNNNNNNNTGG 1 cut(s) 1208
XhoI CTCGAG 1 cut(s) 63
XmiI GTMKAC 1 cut(s) 142
XmnI GAANNNNTTC 1 cut(s) 864
XspI CTAG 5 cut(s) 90, 146, 422, 609, 629
ZrmI AGTACT 1 cut(s) 648
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.