Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0006226

Physical Location & Seq

Genomic Coordinates Forward (+)

11495959 .. 11496451

Gene Structure 493 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g08730.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGCTAATGAGTGAATTTCACTTGTACCAGAAGAAGAAATTTCATAGCCGACGGAAGAAGCTGAATGCATATGATATCTCTTCCCTCTCAGAGTTTCTGCCTGAGTTGAAGGATTCACTAGAACTAACTCCTGCTGCAAAGTTCAAGCTAATATTGAAGGAAGGAAAGCGTCTGAGTGCACTTGTTAATCATCCTGCTTTCCAGATGGATCCGCTAGCTGCAATTTATCAAGACATAATAAGCACACAGCCTGTGGTGGATGAGAAACCGAATGAAAGGAACAAATTTGGAAGCAAGAAGAGGAATCAGAAGAAATCTGAGGCTCCAGCCGGGCACCAATCTATGGATTTTCATCTATCGACCTTGAACTGTGGAATTTCATCCATCCACCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SLX9

Protein Analysis

132

Amino Acids

14.97

Weight (kDa)

9.58

Isoelectric Point (pI)

48.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01640 AT2G01640
fragaria_vesca	FvH4_5g29540
malus_domestica	MD05G1087800.v1.1 MD08G1229200.v1.1 MD15G1423200.v1.1
prunus_persica	Prupe.1G568500_v2.0.a1
pyrus_communis	pycom05g08730 pycom08g19960 pycom15g37500
rosa_chinensis	RchiOBHm_Chr7g0222441
rosa_laevigata	RLG00000002059
rosa_multiflora	Rmu_sc0004638.1_g000012
rosa_roxburghii	Rroxscaffold_3G00236950
rosa_rugosa	Rorug05G0559400 Rorug07G0208600.1 Rorug07G0208700
rosa_samantha	Rh6AG077900 Rh6BG070000 Rh6CG068700 Rh6DG065600 Rh7AG350800 Rh7BG341700 Rh7CG368100 Rh7DG347700
rosa_wichuraiana	Rw7G029630 Rw7G029970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	333
AccB7I	CCANNNNNTGG	1 cut(s)	343
AciI	CCGC	1 cut(s)	212
AclWI	GGATC	2 cut(s)	203, 216
AcsI	RAATTY	4 cut(s)	14, 38, 284, 375
AfaI	GTAC	1 cut(s)	26
AfiI	CCNNNNNNNGG	1 cut(s)	343
AgsI	TTSAA	4 cut(s)	109, 145, 157, 367
AluBI	AGCT	3 cut(s)	61, 148, 218
AluI	AGCT	3 cut(s)	61, 148, 218
Alw21I	GWGCWC	1 cut(s)	181
Alw44I	GTGCAC	1 cut(s)	177
AlwI	GGATC	2 cut(s)	203, 216
ApaLI	GTGCAC	1 cut(s)	177
ApeKI	GCWGC	2 cut(s)	134, 218
ApoI	RAATTY	4 cut(s)	14, 38, 284, 375
AsuC2I	CCSGG	1 cut(s)	331
AsuNHI	GCTAGC	1 cut(s)	214
BaeGI	GKGCMC	2 cut(s)	181, 336
BamHI	GGATCC	1 cut(s)	208
BanI	GGYRCC	1 cut(s)	333
Bbv12I	GWGCWC	1 cut(s)	181
BbvI	GCAGC	2 cut(s)	121, 205
BccI	CCATC	2 cut(s)	199, 392
BcnI	CCSGG	1 cut(s)	331
BfaI	CTAG	2 cut(s)	119, 215
BisI	GCNGC	2 cut(s)	135, 219
BlsI	GCNGC	2 cut(s)	136, 220
Bme1390I	CCNGG	1 cut(s)	331
BmiI	GGNNCC	3 cut(s)	210, 324, 335
BmrFI	CCNGG	1 cut(s)	331
BmtI	GCTAGC	1 cut(s)	218
BpmI	CTGGAG	1 cut(s)	309
BpuMI	CCSGG	1 cut(s)	331
BsaBI	GATNNNNATC	1 cut(s)	351
Bsc4I	CCNNNNNNNGG	1 cut(s)	343
Bse8I	GATNNNNATC	1 cut(s)	351
BseGI	GGATG	4 cut(s)	190, 265, 380, 384
BseJI	GATNNNNATC	1 cut(s)	351
BseLI	CCNNNNNNNGG	1 cut(s)	343
BseMII	CTCAG	4 cut(s)	93, 102, 164, 309
BseSI	GKGCMC	2 cut(s)	181, 336
BseXI	GCAGC	2 cut(s)	121, 205
BshNI	GGYRCC	1 cut(s)	333
BsiHKAI	GWGCWC	1 cut(s)	181
BsiSI	CCGG	1 cut(s)	330
BslI	CCNNNNNNNGG	1 cut(s)	343
BsmI	GAATGC	1 cut(s)	70
Bsp1286I	GDGCHC	2 cut(s)	181, 336
Bsp143I	GATC	1 cut(s)	208
BspACI	CCGC	1 cut(s)	212
BspCNI	CTCAG	4 cut(s)	94, 101, 165, 310
BspLI	GGNNCC	3 cut(s)	210, 324, 335
BspOI	GCTAGC	1 cut(s)	218
BspPI	GGATC	2 cut(s)	203, 216
BspT107I	GGYRCC	1 cut(s)	333
BssMI	GATC	1 cut(s)	208
Bst4CI	ACNGT	1 cut(s)	371
Bst6I	CTCTTC	2 cut(s)	85, 293
BstC8I	GCNNGC	1 cut(s)	216
BstDEI	CTNAG	4 cut(s)	88, 102, 173, 318
BstF5I	GGATG	4 cut(s)	190, 265, 380, 384
BstKTI	GATC	1 cut(s)	211
BstMBI	GATC	1 cut(s)	208
BstSCI	CCNGG	1 cut(s)	329
BstSLI	GKGCMC	2 cut(s)	181, 336
BstV1I	GCAGC	2 cut(s)	121, 205
BstX2I	RGATCY	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	208
BtsCI	GGATG	4 cut(s)	190, 265, 380, 384
Cac8I	GCNNGC	1 cut(s)	216
CseI	GACGC	1 cut(s)	158
Csp6I	GTAC	1 cut(s)	25
CviJI	RGCY	7 cut(s)	48, 61, 148, 218, 250, 323, 329
CviKI_1	RGCY	7 cut(s)	48, 61, 148, 218, 250, 323, 329
CviQI	GTAC	1 cut(s)	25
DdeI	CTNAG	4 cut(s)	88, 102, 173, 318
DpnI	GATC	1 cut(s)	210
DpnII	GATC	1 cut(s)	208
Eam1104I	CTCTTC	2 cut(s)	85, 293
EarI	CTCTTC	2 cut(s)	85, 293
Eco32I	GATATC	1 cut(s)	76
EcoRV	GATATC	1 cut(s)	76
EcoT22I	ATGCAT	1 cut(s)	70
FaiI	YATR	5 cut(s)	45, 70, 72, 236, 344
FauNDI	CATATG	1 cut(s)	70
Fnu4HI	GCNGC	2 cut(s)	135, 219
FokI	GGATG	4 cut(s)	177, 272, 367, 371
Fsp4HI	GCNGC	2 cut(s)	135, 219
FspBI	CTAG	2 cut(s)	119, 215
GluI	GCNGC	2 cut(s)	135, 219
GsuI	CTGGAG	1 cut(s)	309
HapII	CCGG	1 cut(s)	330
HgaI	GACGC	1 cut(s)	158
HinfI	GANTC	2 cut(s)	113, 304
HpaII	CCGG	1 cut(s)	330
Hpy166II	GTNNAC	1 cut(s)	179
Hpy188I	TCNGA	4 cut(s)	91, 174, 309, 319
Hpy188III	TCNNGA	2 cut(s)	202, 230
Hpy8I	GTNNAC	1 cut(s)	179
Hpy99I	CGWCG	1 cut(s)	54
HpyAV	CCTTC	3 cut(s)	103, 151, 155
HpyCH4III	ACNGT	1 cut(s)	371
HpyCH4V	TGCA	4 cut(s)	68, 137, 179, 221
HpyF3I	CTNAG	4 cut(s)	88, 102, 173, 318
Kzo9I	GATC	1 cut(s)	208
LmnI	GCTCC	1 cut(s)	328
LpnPI	CCDG	8 cut(s)	41, 114, 144, 207, 215, 264, 339, 343
Lsp1109I	GCAGC	2 cut(s)	121, 205
MaeI	CTAG	2 cut(s)	119, 215
MalI	GATC	1 cut(s)	210
MboI	GATC	1 cut(s)	208
MboII	GAAGA	6 cut(s)	43, 46, 67, 72, 310, 322
MflI	RGATCY	1 cut(s)	208
MhlI	GDGCHC	2 cut(s)	181, 336
MluCI	AATT	5 cut(s)	14, 38, 222, 284, 375
MnlI	CCTC	3 cut(s)	95, 294, 313
Mph1103I	ATGCAT	1 cut(s)	70
MseI	TTAA	1 cut(s)	186
MspI	CCGG	1 cut(s)	330
MspR9I	CCNGG	1 cut(s)	331
Mva1269I	GAATGC	1 cut(s)	70
NciI	CCSGG	1 cut(s)	331
NdeI	CATATG	1 cut(s)	70
NdeII	GATC	1 cut(s)	208
NheI	GCTAGC	1 cut(s)	214
NlaIV	GGNNCC	3 cut(s)	210, 324, 335
NsiI	ATGCAT	1 cut(s)	70
PctI	GAATGC	1 cut(s)	70
PfeI	GAWTC	2 cut(s)	113, 304
PflMI	CCANNNNNTGG	1 cut(s)	343
PkrI	GCNGC	2 cut(s)	136, 220
PspN4I	GGNNCC	3 cut(s)	210, 324, 335
PsuI	RGATCY	1 cut(s)	208
RsaI	GTAC	1 cut(s)	26
RsaNI	GTAC	1 cut(s)	25
SaqAI	TTAA	1 cut(s)	186
SatI	GCNGC	2 cut(s)	135, 219
Sau3AI	GATC	1 cut(s)	208
ScrFI	CCNGG	1 cut(s)	331
SduI	GDGCHC	2 cut(s)	181, 336
SetI	ASST	5 cut(s)	63, 150, 220, 365, 393
Sse9I	AATT	5 cut(s)	14, 38, 222, 284, 375
SsiI	CCGC	1 cut(s)	212
SspI	AATATT	1 cut(s)	153
SspMI	CTAG	2 cut(s)	119, 215
StyD4I	CCNGG	1 cut(s)	329
TaaI	ACNGT	1 cut(s)	371
TaqI	TCGA	1 cut(s)	359
TasI	AATT	5 cut(s)	14, 38, 222, 284, 375
TfiI	GAWTC	2 cut(s)	113, 304
Tru1I	TTAA	1 cut(s)	186
Tru9I	TTAA	1 cut(s)	186
TseI	GCWGC	2 cut(s)	134, 218
TspDTI	ATGAA	4 cut(s)	32, 288, 341, 369
TspGWI	ACGGA	1 cut(s)	67
Van91I	CCANNNNNTGG	1 cut(s)	343
VneI	GTGCAC	1 cut(s)	177
XapI	RAATTY	4 cut(s)	14, 38, 284, 375
XspI	CTAG	2 cut(s)	119, 215
Zsp2I	ATGCAT	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.