Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006226

Physical Location & Seq

Genomic Coordinates Reverse (-)

46349292 .. 46352333

Gene Structure 3042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G568500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGGCAAGCCAGGTTCACGCTCAGAATCATCTACCAAAGCCGACCTCAAATTCGAAAAGAAGCTCGAATTTTATGCTAAGGTTAGAGATACAGTTTCTGGCTTGGGTGCCCAGAAGGCTATTGTGAAGAAGAAGAAACTGCGTAGCCGACAGAAGAAACTGAAAGCATATGATCTCTCTTCCTTCTCAGAGTTTCTGCCTGAGTTGAAGGCTAAAAAGCAACCCACTTCTGAGTTCAAGCTAAATTGCAAATCCAAGAAAACCCTAATATTGAAGGAAGGAAAGCAGTTGGCTACAGTTCTTGAGCATCCCGCTTTCAAGTCAGATCCCTTAGCTGCCATTCAACAACACTTGGAGAGGACACAGCCAGTGGTAGAAGTGAAACCAGAGAAAAGGAAAAACAAAAGTGGAAGCAAGAAGAGGAAAGACAAGAAATTGAAGGCTTCAGCCGGACCCCAATCTATGGATATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SLX9

Protein Analysis

158

Amino Acids

17.69

Weight (kDa)

10.19

Isoelectric Point (pI)

41.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01640 AT2G01640
fragaria_vesca	FvH4_5g29540
malus_domestica	MD05G1087800.v1.1 MD08G1229200.v1.1 MD15G1423200.v1.1
prunus_persica	Prupe.1G568500_v2.0.a1
pyrus_communis	pycom05g08730 pycom08g19960 pycom15g37500
rosa_chinensis	RchiOBHm_Chr7g0222441
rosa_laevigata	RLG00000002059
rosa_multiflora	Rmu_sc0004638.1_g000012
rosa_roxburghii	Rroxscaffold_3G00236950
rosa_rugosa	Rorug05G0559400 Rorug07G0208600.1 Rorug07G0208700
rosa_samantha	Rh6AG077900 Rh6BG070000 Rh6CG068700 Rh6DG065600 Rh7AG350800 Rh7BG341700 Rh7CG368100 Rh7DG347700
rosa_wichuraiana	Rw7G029630 Rw7G029970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	107
AccB7I	CCANNNNNTGG	1 cut(s)	463
AciI	CCGC	1 cut(s)	312
AclWI	GGATC	1 cut(s)	320
AcsI	RAATTY	2 cut(s)	50, 68
AcuI	CTGAAG	1 cut(s)	429
AfiI	CCNNNNNNNGG	1 cut(s)	463
AgsI	TTSAA	6 cut(s)	208, 238, 274, 319, 344, 439
AjnI	CCWGG	1 cut(s)	10
AluBI	AGCT	3 cut(s)	64, 241, 335
AluI	AGCT	3 cut(s)	64, 241, 335
AlwI	GGATC	1 cut(s)	320
AlwNI	CAGNNNCTG	1 cut(s)	98
ApeKI	GCWGC	1 cut(s)	335
ApoI	RAATTY	2 cut(s)	50, 68
ArsI	GACNNNNNNTTYG	2 cut(s)	35, 67
AspS9I	GGNCC	1 cut(s)	452
AsuII	TTCGAA	1 cut(s)	54
AvaII	GGWCC	1 cut(s)	452
BaeGI	GKGCMC	1 cut(s)	112
BanI	GGYRCC	1 cut(s)	107
BbvI	GCAGC	1 cut(s)	322
BcgI	CGANNNNNNTGC	2 cut(s)	56, 90
BciT130I	CCWGG	1 cut(s)	12
BfmI	CTRYAG	1 cut(s)	294
BglI	GCCNNNNNGGC	1 cut(s)	116
BisI	GCNGC	1 cut(s)	336
BlsI	GCNGC	1 cut(s)	337
Bme1390I	CCNGG	1 cut(s)	12
Bme18I	GGWCC	1 cut(s)	452
BmgT120I	GGNCC	1 cut(s)	452
BmiI	GGNNCC	2 cut(s)	109, 454
BmrFI	CCNGG	1 cut(s)	12
BmsI	GCATC	1 cut(s)	316
Bpu10I	CCTNAGC	2 cut(s)	78, 331
Bpu14I	TTCGAA	1 cut(s)	54
BpuEI	CTTGAG	1 cut(s)	323
Bsc4I	CCNNNNNNNGG	1 cut(s)	463
Bse1I	ACTGG	1 cut(s)	368
BseBI	CCWGG	1 cut(s)	12
BseGI	GGATG	1 cut(s)	307
BseLI	CCNNNNNNNGG	1 cut(s)	463
BseMII	CTCAG	4 cut(s)	36, 192, 201, 222
BseNI	ACTGG	1 cut(s)	368
BseSI	GKGCMC	1 cut(s)	112
BseXI	GCAGC	1 cut(s)	322
BshNI	GGYRCC	1 cut(s)	107
BsiSI	CCGG	1 cut(s)	450
BslI	CCNNNNNNNGG	1 cut(s)	463
Bsp119I	TTCGAA	1 cut(s)	54
Bsp1286I	GDGCHC	1 cut(s)	112
Bsp143I	GATC	2 cut(s)	172, 325
BspACI	CCGC	1 cut(s)	312
BspCNI	CTCAG	4 cut(s)	35, 193, 200, 223
BspLI	GGNNCC	2 cut(s)	109, 454
BspPI	GGATC	1 cut(s)	320
BspT104I	TTCGAA	1 cut(s)	54
BspT107I	GGYRCC	1 cut(s)	107
BsrI	ACTGG	1 cut(s)	368
BssMI	GATC	2 cut(s)	172, 325
Bst2UI	CCWGG	1 cut(s)	12
Bst4CI	ACNGT	2 cut(s)	94, 298
Bst6I	CTCTTC	2 cut(s)	184, 413
BstBI	TTCGAA	1 cut(s)	54
BstC8I	GCNNGC	1 cut(s)	8
BstDEI	CTNAG	6 cut(s)	22, 78, 187, 201, 231, 331
BstF5I	GGATG	1 cut(s)	307
BstKTI	GATC	2 cut(s)	175, 328
BstMBI	GATC	2 cut(s)	172, 325
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstNI	CCWGG	1 cut(s)	12
BstSCI	CCNGG	1 cut(s)	10
BstSFI	CTRYAG	1 cut(s)	294
BstSLI	GKGCMC	1 cut(s)	112
BstV1I	GCAGC	1 cut(s)	322
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
BtsCI	GGATG	1 cut(s)	307
BtsIMutI	CAGTG	1 cut(s)	375
Cac8I	GCNNGC	1 cut(s)	8
CaiI	CAGNNNCTG	1 cut(s)	98
Cfr13I	GGNCC	1 cut(s)	452
DdeI	CTNAG	6 cut(s)	22, 78, 187, 201, 231, 331
DpnI	GATC	2 cut(s)	174, 327
DpnII	GATC	2 cut(s)	172, 325
Eam1104I	CTCTTC	2 cut(s)	184, 413
EarI	CTCTTC	2 cut(s)	184, 413
Eco47I	GGWCC	1 cut(s)	452
Eco57I	CTGAAG	1 cut(s)	429
EcoRII	CCWGG	1 cut(s)	10
FaiI	YATR	5 cut(s)	75, 169, 171, 464, 470
FauI	CCCGC	1 cut(s)	319
FauNDI	CATATG	1 cut(s)	169
Fnu4HI	GCNGC	1 cut(s)	336
FokI	GGATG	1 cut(s)	294
Fsp4HI	GCNGC	1 cut(s)	336
GluI	GCNGC	1 cut(s)	336
HapII	CCGG	1 cut(s)	450
HinfI	GANTC	1 cut(s)	26
HpaII	CCGG	1 cut(s)	450
Hpy166II	GTNNAC	1 cut(s)	17
Hpy188I	TCNGA	4 cut(s)	25, 190, 232, 325
Hpy188III	TCNNGA	1 cut(s)	302
Hpy8I	GTNNAC	1 cut(s)	17
HpyAV	CCTTC	6 cut(s)	109, 193, 202, 268, 272, 433
HpyCH4III	ACNGT	2 cut(s)	94, 298
HpyCH4V	TGCA	1 cut(s)	249
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
HpyF3I	CTNAG	6 cut(s)	22, 78, 187, 201, 231, 331
Kzo9I	GATC	2 cut(s)	172, 325
LpnPI	CCDG	7 cut(s)	24, 84, 125, 213, 381, 399, 463
Lsp1109I	GCAGC	1 cut(s)	322
LweI	GCATC	1 cut(s)	316
MalI	GATC	2 cut(s)	174, 327
MboI	GATC	2 cut(s)	172, 325
MboII	GAAGA	6 cut(s)	139, 142, 145, 166, 171, 430
MflI	RGATCY	1 cut(s)	325
MhlI	GDGCHC	1 cut(s)	112
MluCI	AATT	4 cut(s)	50, 68, 244, 434
MnlI	CCTC	3 cut(s)	56, 351, 414
MspI	CCGG	1 cut(s)	450
MspR9I	CCNGG	1 cut(s)	12
MvaI	CCWGG	1 cut(s)	12
MwoI	GCNNNNNNNGC	1 cut(s)	116
NdeI	CATATG	1 cut(s)	169
NdeII	GATC	2 cut(s)	172, 325
NlaIV	GGNNCC	2 cut(s)	109, 454
NspV	TTCGAA	1 cut(s)	54
PfeI	GAWTC	1 cut(s)	26
PflMI	CCANNNNNTGG	1 cut(s)	463
PkrI	GCNGC	1 cut(s)	337
Psp6I	CCWGG	1 cut(s)	10
PspGI	CCWGG	1 cut(s)	10
PspN4I	GGNNCC	2 cut(s)	109, 454
PspPI	GGNCC	1 cut(s)	452
PstNI	CAGNNNCTG	1 cut(s)	98
PsuI	RGATCY	1 cut(s)	325
SatI	GCNGC	1 cut(s)	336
Sau3AI	GATC	2 cut(s)	172, 325
Sau96I	GGNCC	1 cut(s)	452
ScrFI	CCNGG	1 cut(s)	12
SduI	GDGCHC	1 cut(s)	112
SetI	ASST	6 cut(s)	16, 48, 66, 84, 243, 337
SfaNI	GCATC	1 cut(s)	316
SfcI	CTRYAG	1 cut(s)	294
SfuI	TTCGAA	1 cut(s)	54
SinI	GGWCC	1 cut(s)	452
SmlI	CTYRAG	1 cut(s)	302
SmoI	CTYRAG	1 cut(s)	302
Sse9I	AATT	4 cut(s)	50, 68, 244, 434
SsiI	CCGC	1 cut(s)	312
SspI	AATATT	1 cut(s)	270
StyD4I	CCNGG	1 cut(s)	10
TaaI	ACNGT	2 cut(s)	94, 298
TaqI	TCGA	2 cut(s)	54, 66
TasI	AATT	4 cut(s)	50, 68, 244, 434
TfiI	GAWTC	1 cut(s)	26
TscAI	CASTG	1 cut(s)	375
TseI	GCWGC	1 cut(s)	335
TspRI	CASTG	1 cut(s)	375
Van91I	CCANNNNNTGG	1 cut(s)	463
VpaK11BI	GGWCC	1 cut(s)	452
XapI	RAATTY	2 cut(s)	50, 68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.