Rroxscaffold_3G00236950

Ribosome biogenesis protein SLX9

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0006226
Physical Location & Seq
Reverse (-)
24459209 .. 24465644
6436 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00236950.1

Sequence Viewer

Length: 564 bp
ATGGGCAAGCCTGGTTCACGGCAAGACTTGTCGACCAAAGCCGACCGCAAATTCGAAAAGAAGCTCGATTTCTATGCTAGTGAGTTTCGATTTTCACTTCGGTCTTCGTTTTGCTTTTCTATTATACCCTCTGCTTGTCGTGAGGTTAGAGATACAGTTTCTACCTTGAGCACCCAGAAAACTATTGTTAAGAAGAAGAAACTCCGTAGCCGACAGAAGAAACTGAAAACGTATGATCTCTCTGCCCTAACAGAGTTCCTGCCAGAGTTGAAGGGTGAACAGAAACCAACTCCTCCATCAGATTTCAAGCGAAATTGTAAATCTATGCGAAAGCTAATATTGAAGGAAGGAAAGCAGTTGACTACAGTTCTTAATCATCCCGCCTTCCAGTCGGATGCCTTAGCTGCCATTCATCAACACTTAGAGAGGACACAGCCAGTGAGAGAGGAGGAAAAACCAGAGAAAAGGAAAAACAAATGTGGAAGCAAGAAGAGGAAAGGTGGAAGCAAGAAGAAAGGGGTGAAATCTGAAGGTCCATCTGGACACCAATCTATGGATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SLX9

Protein Analysis

187

Amino Acids

21.34

Weight (kDa)

10.14

Isoelectric Point (pI)

49.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SLX9 PF15341 60 - 144 1.9e-07 Ribosome biogenesis protein SLX9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 553
AccI GTMKAC 1 cut(s) 32
AciI CCGC 2 cut(s) 46, 381
AcsI RAATTY 1 cut(s) 50
AcuI CTGAAG 1 cut(s) 549
AfiI CCNNNNNNNGG 1 cut(s) 553
AgsI TTSAA 3 cut(s) 271, 307, 343
AjnI CCWGG 1 cut(s) 10
AluBI AGCT 3 cut(s) 64, 334, 404
AluI AGCT 3 cut(s) 64, 334, 404
Alw21I GWGCWC 1 cut(s) 173
ApeKI GCWGC 1 cut(s) 404
ApoI RAATTY 1 cut(s) 50
ArsI GACNNNNNNTTYG 2 cut(s) 35, 67
AspS9I GGNCC 1 cut(s) 533
AsuHPI GGTGA 2 cut(s) 287, 532
AsuII TTCGAA 1 cut(s) 54
AvaII GGWCC 1 cut(s) 533
BbsI GAAGAC 1 cut(s) 96
Bbv12I GWGCWC 1 cut(s) 173
BbvI GCAGC 1 cut(s) 391
BccI CCATC 2 cut(s) 304, 544
BceAI ACGGC 1 cut(s) 35
BcgI CGANNNNNNTGC 2 cut(s) 56, 90
BciT130I CCWGG 1 cut(s) 12
BfaI CTAG 1 cut(s) 78
BfmI CTRYAG 1 cut(s) 363
BisI GCNGC 1 cut(s) 405
BlsI GCNGC 1 cut(s) 406
Bme1390I CCNGG 1 cut(s) 12
Bme18I GGWCC 1 cut(s) 533
BmgT120I GGNCC 1 cut(s) 533
BmrFI CCNGG 1 cut(s) 12
BmsI GCATC 1 cut(s) 385
BpiI GAAGAC 1 cut(s) 96
Bpu10I CCTNAGC 1 cut(s) 400
Bpu14I TTCGAA 1 cut(s) 54
BpuEI CTTGAG 1 cut(s) 187
Bsc4I CCNNNNNNNGG 1 cut(s) 553
Bse1I ACTGG 2 cut(s) 388, 437
BseBI CCWGG 1 cut(s) 12
BseGI GGATG 2 cut(s) 376, 400
BseLI CCNNNNNNNGG 1 cut(s) 553
BseNI ACTGG 2 cut(s) 388, 437
BseRI GAGGAG 2 cut(s) 282, 461
BseXI GCAGC 1 cut(s) 391
Bsh1285I CGRYCG 1 cut(s) 46
BsiEI CGRYCG 1 cut(s) 46
BsiHKAI GWGCWC 1 cut(s) 173
BslI CCNNNNNNNGG 1 cut(s) 553
Bsp119I TTCGAA 1 cut(s) 54
Bsp1286I GDGCHC 1 cut(s) 173
Bsp143I GATC 1 cut(s) 235
BspACI CCGC 2 cut(s) 46, 381
BspT104I TTCGAA 1 cut(s) 54
BsrI ACTGG 2 cut(s) 388, 437
BssMI GATC 1 cut(s) 235
Bst2UI CCWGG 1 cut(s) 12
Bst4CI ACNGT 2 cut(s) 157, 367
Bst6I CTCTTC 1 cut(s) 485
BstBI TTCGAA 1 cut(s) 54
BstC8I GCNNGC 1 cut(s) 8
BstDEI CTNAG 2 cut(s) 400, 421
BstF5I GGATG 2 cut(s) 376, 400
BstKTI GATC 1 cut(s) 238
BstMBI GATC 1 cut(s) 235
BstMCI CGRYCG 1 cut(s) 46
BstMWI GCNNNNNNNGC 1 cut(s) 404
BstNI CCWGG 1 cut(s) 12
BstSCI CCNGG 1 cut(s) 10
BstSFI CTRYAG 1 cut(s) 363
BstV1I GCAGC 1 cut(s) 391
BstV2I GAAGAC 1 cut(s) 96
BtsCI GGATG 2 cut(s) 376, 400
BtsIMutI CAGTG 1 cut(s) 444
Cac8I GCNNGC 1 cut(s) 8
Cfr13I GGNCC 1 cut(s) 533
CviJI RGCY 7 cut(s) 10, 41, 64, 210, 334, 404, 436
CviKI_1 RGCY 7 cut(s) 10, 41, 64, 210, 334, 404, 436
DdeI CTNAG 2 cut(s) 400, 421
DpnI GATC 1 cut(s) 237
DpnII GATC 1 cut(s) 235
Eam1104I CTCTTC 1 cut(s) 485
EarI CTCTTC 1 cut(s) 485
Eco47I GGWCC 1 cut(s) 533
Eco57I CTGAAG 1 cut(s) 549
EcoRII CCWGG 1 cut(s) 10
FaiI YATR 6 cut(s) 75, 125, 234, 326, 554, 560
FauI CCCGC 1 cut(s) 388
FblI GTMKAC 1 cut(s) 32
Fnu4HI GCNGC 1 cut(s) 405
FokI GGATG 2 cut(s) 363, 407
Fsp4HI GCNGC 1 cut(s) 405
FspBI CTAG 1 cut(s) 78
GluI GCNGC 1 cut(s) 405
HincII GTYRAC 2 cut(s) 33, 360
HindII GTYRAC 2 cut(s) 33, 360
HphI GGTGA 2 cut(s) 287, 532
Hpy166II GTNNAC 4 cut(s) 17, 33, 278, 360
Hpy188I TCNGA 3 cut(s) 301, 394, 529
Hpy188III TCNNGA 2 cut(s) 140, 540
Hpy8I GTNNAC 4 cut(s) 17, 33, 278, 360
HpyAV CCTTC 5 cut(s) 265, 337, 341, 394, 524
HpyCH4III ACNGT 2 cut(s) 157, 367
HpyCH4IV ACGT 1 cut(s) 230
HpyF10VI GCNNNNNNNGC 1 cut(s) 404
HpyF3I CTNAG 2 cut(s) 400, 421
HpySE526I ACGT 1 cut(s) 230
Kzo9I GATC 1 cut(s) 235
LpnPI CCDG 8 cut(s) 24, 188, 272, 276, 401, 450, 471, 525
Lsp1109I GCAGC 1 cut(s) 391
LweI GCATC 1 cut(s) 385
MaeI CTAG 1 cut(s) 78
MaeII ACGT 1 cut(s) 230
MalI GATC 1 cut(s) 237
MboI GATC 1 cut(s) 235
MboII GAAGA 6 cut(s) 96, 205, 208, 229, 502, 523
MhlI GDGCHC 1 cut(s) 173
MluCI AATT 2 cut(s) 50, 313
MmeI TCCRAC 1 cut(s) 372
MnlI CCTC 7 cut(s) 136, 139, 303, 420, 439, 442, 486
MseI TTAA 2 cut(s) 189, 372
MspR9I CCNGG 1 cut(s) 12
MvaI CCWGG 1 cut(s) 12
MwoI GCNNNNNNNGC 1 cut(s) 404
NdeII GATC 1 cut(s) 235
NspV TTCGAA 1 cut(s) 54
PflMI CCANNNNNTGG 1 cut(s) 553
PkrI GCNGC 1 cut(s) 406
Psp6I CCWGG 1 cut(s) 10
PspGI CCWGG 1 cut(s) 10
PspPI GGNCC 1 cut(s) 533
SalI GTCGAC 1 cut(s) 31
SaqAI TTAA 2 cut(s) 189, 372
SatI GCNGC 1 cut(s) 405
Sau3AI GATC 1 cut(s) 235
Sau96I GGNCC 1 cut(s) 533
ScrFI CCNGG 1 cut(s) 12
SduI GDGCHC 1 cut(s) 173
SetI ASST 8 cut(s) 66, 147, 167, 233, 336, 406, 502, 535
SfaNI GCATC 1 cut(s) 385
SfcI CTRYAG 1 cut(s) 363
SfuI TTCGAA 1 cut(s) 54
SinI GGWCC 1 cut(s) 533
SmlI CTYRAG 1 cut(s) 166
SmoI CTYRAG 1 cut(s) 166
Sse9I AATT 2 cut(s) 50, 313
SsiI CCGC 2 cut(s) 46, 381
SspI AATATT 1 cut(s) 339
SspMI CTAG 1 cut(s) 78
StyD4I CCNGG 1 cut(s) 10
TaaI ACNGT 2 cut(s) 157, 367
TaiI ACGT 1 cut(s) 233
TaqI TCGA 4 cut(s) 32, 54, 66, 88
TaqII GACCGA 1 cut(s) 90
TasI AATT 2 cut(s) 50, 313
Tru1I TTAA 2 cut(s) 189, 372
Tru9I TTAA 2 cut(s) 189, 372
TscAI CASTG 1 cut(s) 444
TseI GCWGC 1 cut(s) 404
TspDTI ATGAA 1 cut(s) 401
TspGWI ACGGA 1 cut(s) 194
TspRI CASTG 1 cut(s) 444
Van91I CCANNNNNTGG 1 cut(s) 553
VpaK11BI GGWCC 1 cut(s) 533
XapI RAATTY 1 cut(s) 50
XmiI GTMKAC 1 cut(s) 32
XspI CTAG 1 cut(s) 78
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.