pycom08g19960

Ribosome biogenesis protein SLX9

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0006226
Physical Location & Seq
Reverse (-)
19896546 .. 19899328
2783 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g19960.1

Sequence Viewer

Length: 477 bp
ATGGGGAAGCCAGGTTCACGATCAGAATCGTCGACCAAAGCCGACCGCAAGTTCGAAAAGAAGCTCGAATTTTATGCTAAGGTTAGAGATGCAGTTTCTTCCTTGGGTGCACAGAAGACTATTGTTAAGAAGAAGAAACTACGTAGTCGACAGAAGAAACTGAAAGCATATGATCTCTCTTCTTTCTCAGAATTCCTTCCGGAGTTGAAGGAAAAGCGACCCACACCTGCTTCGGAGTTCAAGATAAATTGTAAATCGAAGAAAAAGCTAGTATCGAAGGAAGGAAAGCAGTTGACTACAGTTCTCAATCATCCCACTTTCAAGTTGAGTCCCCTAGCTGCCATTCATCAACACTTGCAGAGTACTCAGCCAGTTGTAGATGTCAAGCCAGAGAAAAGGAAAAACAGAAGTGGAAGCAAGAAGAGGAAAGAAAACAAATCTAAGGCGTCAATCGGACCCCAAGCTATGGATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SLX9

Protein Analysis

159

Amino Acids

17.87

Weight (kDa)

10.37

Isoelectric Point (pI)

51.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SLX9 PF15341 10 - 122 6.4e-10 Ribosome biogenesis protein SLX9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 235
Acc36I ACCTGC 1 cut(s) 235
AccB7I CCANNNNNTGG 1 cut(s) 466
AccI GTMKAC 2 cut(s) 32, 148
AccIII TCCGGA 1 cut(s) 199
AciI CCGC 1 cut(s) 46
AcsI RAATTY 2 cut(s) 68, 191
AcyI GRCGYC 1 cut(s) 446
AfaI GTAC 1 cut(s) 364
AfiI CCNNNNNNNGG 1 cut(s) 466
AgsI TTSAA 3 cut(s) 208, 241, 322
AjnI CCWGG 1 cut(s) 10
AloI GAACNNNNNNTCC 1 cut(s) 30
AluBI AGCT 4 cut(s) 64, 268, 338, 464
AluI AGCT 4 cut(s) 64, 268, 338, 464
Alw21I GWGCWC 1 cut(s) 112
Alw44I GTGCAC 1 cut(s) 108
Aor13HI TCCGGA 1 cut(s) 199
ApaLI GTGCAC 1 cut(s) 108
ApeKI GCWGC 1 cut(s) 338
ApoI RAATTY 2 cut(s) 68, 191
ArsI GACNNNNNNTTYG 2 cut(s) 35, 67
Asp700I GAANNNNTTC 1 cut(s) 195
AspS9I GGNCC 1 cut(s) 455
AsuII TTCGAA 1 cut(s) 54
AvaII GGWCC 1 cut(s) 455
BaeGI GKGCMC 1 cut(s) 112
BbsI GAAGAC 1 cut(s) 122
Bbv12I GWGCWC 1 cut(s) 112
BbvI GCAGC 1 cut(s) 325
BcgI CGANNNNNNTGC 2 cut(s) 56, 90
BciT130I CCWGG 1 cut(s) 12
BfaI CTAG 2 cut(s) 269, 335
BfmI CTRYAG 1 cut(s) 297
BfuAI ACCTGC 1 cut(s) 235
BisI GCNGC 1 cut(s) 339
BlsI GCNGC 1 cut(s) 340
BmcAI AGTACT 1 cut(s) 364
Bme1390I CCNGG 1 cut(s) 12
Bme18I GGWCC 1 cut(s) 455
BmgT120I GGNCC 1 cut(s) 455
BmiI GGNNCC 1 cut(s) 457
BmrFI CCNGG 1 cut(s) 12
BmsI GCATC 1 cut(s) 79
BpiI GAAGAC 1 cut(s) 122
Bpu10I CCTNAGC 1 cut(s) 78
Bpu14I TTCGAA 1 cut(s) 54
BsaAI YACGTR 1 cut(s) 143
BsaBI GATNNNNATC 1 cut(s) 25
BsaHI GRCGYC 1 cut(s) 446
BsaJI CCNNGG 1 cut(s) 102
BsaWI WCCGGW 1 cut(s) 199
Bsc4I CCNNNNNNNGG 1 cut(s) 466
Bse1I ACTGG 1 cut(s) 371
Bse8I GATNNNNATC 1 cut(s) 25
BseAI TCCGGA 1 cut(s) 199
BseBI CCWGG 1 cut(s) 12
BseDI CCNNGG 1 cut(s) 102
BseGI GGATG 1 cut(s) 310
BseJI GATNNNNATC 1 cut(s) 25
BseLI CCNNNNNNNGG 1 cut(s) 466
BseMII CTCAG 2 cut(s) 201, 380
BseNI ACTGG 1 cut(s) 371
BseSI GKGCMC 1 cut(s) 112
BseXI GCAGC 1 cut(s) 325
Bsh1285I CGRYCG 1 cut(s) 46
BsiEI CGRYCG 1 cut(s) 46
BsiHKAI GWGCWC 1 cut(s) 112
BsiSI CCGG 1 cut(s) 200
BslFI GGGAC 1 cut(s) 315
BslI CCNNNNNNNGG 1 cut(s) 466
BsmFI GGGAC 1 cut(s) 315
Bsp119I TTCGAA 1 cut(s) 54
Bsp1286I GDGCHC 1 cut(s) 112
Bsp13I TCCGGA 1 cut(s) 199
Bsp143I GATC 2 cut(s) 20, 172
BspACI CCGC 1 cut(s) 46
BspCNI CTCAG 2 cut(s) 200, 379
BspEI TCCGGA 1 cut(s) 199
BspLI GGNNCC 1 cut(s) 457
BspMI ACCTGC 1 cut(s) 235
BspT104I TTCGAA 1 cut(s) 54
BsrI ACTGG 1 cut(s) 371
BssECI CCNNGG 1 cut(s) 102
BssMI GATC 2 cut(s) 20, 172
BssNI GRCGYC 1 cut(s) 446
BssT1I CCWWGG 1 cut(s) 102
Bst2UI CCWGG 1 cut(s) 12
Bst4CI ACNGT 1 cut(s) 301
Bst6I CTCTTC 2 cut(s) 184, 416
BstACI GRCGYC 1 cut(s) 446
BstBAI YACGTR 1 cut(s) 143
BstBI TTCGAA 1 cut(s) 54
BstDEI CTNAG 4 cut(s) 78, 187, 366, 441
BstF5I GGATG 1 cut(s) 310
BstKTI GATC 2 cut(s) 23, 175
BstMBI GATC 2 cut(s) 20, 172
BstMCI CGRYCG 1 cut(s) 46
BstNI CCWGG 1 cut(s) 12
BstSCI CCNGG 1 cut(s) 10
BstSFI CTRYAG 1 cut(s) 297
BstSLI GKGCMC 1 cut(s) 112
BstSNI TACGTA 1 cut(s) 143
BstV1I GCAGC 1 cut(s) 325
BstV2I GAAGAC 1 cut(s) 122
BtsCI GGATG 1 cut(s) 310
BveI ACCTGC 1 cut(s) 235
Cfr13I GGNCC 1 cut(s) 455
CseI GACGC 1 cut(s) 435
Csp6I GTAC 1 cut(s) 363
CviJI RGCY 8 cut(s) 10, 41, 64, 268, 338, 370, 388, 464
CviKI_1 RGCY 8 cut(s) 10, 41, 64, 268, 338, 370, 388, 464
CviQI GTAC 1 cut(s) 363
DdeI CTNAG 4 cut(s) 78, 187, 366, 441
DpnI GATC 2 cut(s) 22, 174
DpnII GATC 2 cut(s) 20, 172
Eam1104I CTCTTC 2 cut(s) 184, 416
EarI CTCTTC 2 cut(s) 184, 416
Eco105I TACGTA 1 cut(s) 143
Eco130I CCWWGG 1 cut(s) 102
Eco47I GGWCC 1 cut(s) 455
EcoRI GAATTC 1 cut(s) 191
EcoRII CCWGG 1 cut(s) 10
EcoT14I CCWWGG 1 cut(s) 102
ErhI CCWWGG 1 cut(s) 102
FaiI YATR 5 cut(s) 75, 169, 171, 467, 473
FaqI GGGAC 1 cut(s) 315
FauNDI CATATG 1 cut(s) 169
FblI GTMKAC 2 cut(s) 32, 148
Fnu4HI GCNGC 1 cut(s) 339
FokI GGATG 1 cut(s) 297
Fsp4HI GCNGC 1 cut(s) 339
FspBI CTAG 2 cut(s) 269, 335
GluI GCNGC 1 cut(s) 339
HapII CCGG 1 cut(s) 200
HgaI GACGC 1 cut(s) 435
Hin1I GRCGYC 1 cut(s) 446
HincII GTYRAC 3 cut(s) 33, 149, 294
HindII GTYRAC 3 cut(s) 33, 149, 294
HinfI GANTC 2 cut(s) 26, 328
HpaII CCGG 1 cut(s) 200
Hpy166II GTNNAC 5 cut(s) 17, 33, 110, 149, 294
Hpy188I TCNGA 4 cut(s) 25, 190, 235, 455
Hpy188III TCNNGA 3 cut(s) 18, 200, 241
Hpy8I GTNNAC 5 cut(s) 17, 33, 110, 149, 294
Hpy99I CGWCG 1 cut(s) 34
HpyAV CCTTC 4 cut(s) 202, 206, 271, 275
HpyCH4III ACNGT 1 cut(s) 301
HpyCH4IV ACGT 1 cut(s) 142
HpyCH4V TGCA 3 cut(s) 92, 110, 358
HpyF3I CTNAG 4 cut(s) 78, 187, 366, 441
HpySE526I ACGT 1 cut(s) 142
Hsp92I GRCGYC 1 cut(s) 446
Kpn2I TCCGGA 1 cut(s) 199
Kzo9I GATC 2 cut(s) 20, 172
LpnPI CCDG 5 cut(s) 24, 213, 240, 384, 402
Lsp1109I GCAGC 1 cut(s) 325
LweI GCATC 1 cut(s) 79
MaeI CTAG 2 cut(s) 269, 335
MaeII ACGT 1 cut(s) 142
MalI GATC 2 cut(s) 22, 174
MboI GATC 2 cut(s) 20, 172
MboII GAAGA 8 cut(s) 90, 127, 142, 145, 166, 171, 271, 433
MhlI GDGCHC 1 cut(s) 112
MluCI AATT 3 cut(s) 68, 191, 247
MlyI GAGTC 1 cut(s) 337
MnlI CCTC 1 cut(s) 417
MroI TCCGGA 1 cut(s) 199
MroXI GAANNNNTTC 1 cut(s) 195
MseI TTAA 1 cut(s) 126
MspI CCGG 1 cut(s) 200
MspR9I CCNGG 1 cut(s) 12
MvaI CCWGG 1 cut(s) 12
NdeI CATATG 1 cut(s) 169
NdeII GATC 2 cut(s) 20, 172
NlaIV GGNNCC 1 cut(s) 457
NspV TTCGAA 1 cut(s) 54
PaqCI CACCTGC 1 cut(s) 235
PdmI GAANNNNTTC 1 cut(s) 195
PfeI GAWTC 1 cut(s) 26
PflMI CCANNNNNTGG 1 cut(s) 466
PkrI GCNGC 1 cut(s) 340
PleI GAGTC 1 cut(s) 336
PpsI GAGTC 1 cut(s) 336
Ppu21I YACGTR 1 cut(s) 143
Psp6I CCWGG 1 cut(s) 10
PspGI CCWGG 1 cut(s) 10
PspN4I GGNNCC 1 cut(s) 457
PspPI GGNCC 1 cut(s) 455
RsaI GTAC 1 cut(s) 364
RsaNI GTAC 1 cut(s) 363
SalI GTCGAC 2 cut(s) 31, 147
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 1 cut(s) 339
Sau3AI GATC 2 cut(s) 20, 172
Sau96I GGNCC 1 cut(s) 455
ScaI AGTACT 1 cut(s) 364
SchI GAGTC 1 cut(s) 337
ScrFI CCNGG 1 cut(s) 12
SduI GDGCHC 1 cut(s) 112
SetI ASST 8 cut(s) 16, 66, 84, 145, 229, 270, 340, 466
SfaNI GCATC 1 cut(s) 79
SfcI CTRYAG 1 cut(s) 297
SfuI TTCGAA 1 cut(s) 54
SinI GGWCC 1 cut(s) 455
SnaBI TACGTA 1 cut(s) 143
Sse9I AATT 3 cut(s) 68, 191, 247
SsiI CCGC 1 cut(s) 46
SspMI CTAG 2 cut(s) 269, 335
StyD4I CCNGG 1 cut(s) 10
StyI CCWWGG 1 cut(s) 102
TaaI ACNGT 1 cut(s) 301
TaiI ACGT 1 cut(s) 145
TaqI TCGA 6 cut(s) 32, 54, 66, 148, 257, 275
TasI AATT 3 cut(s) 68, 191, 247
TatI WGTACW 1 cut(s) 362
TfiI GAWTC 1 cut(s) 26
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TseI GCWGC 1 cut(s) 338
TspDTI ATGAA 1 cut(s) 335
Van91I CCANNNNNTGG 1 cut(s) 466
VneI GTGCAC 1 cut(s) 108
VpaK11BI GGWCC 1 cut(s) 455
XapI RAATTY 2 cut(s) 68, 191
XmiI GTMKAC 2 cut(s) 32, 148
XmnI GAANNNNTTC 1 cut(s) 195
XspI CTAG 2 cut(s) 269, 335
ZrmI AGTACT 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.