FvH4_5g29540

Ribosome biogenesis protein SLX9

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0006226
Physical Location & Seq
Reverse (-)
20478430 .. 20483535
5106 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g29540.t1

Sequence Viewer

Length: 681 bp
GTTAATAAAAGCTTGAGGGCGGACGCAGTCATTTATTTAAAAAAAACAAAAACAAAAAAAAGTAATACTCGATTTACATCAGGTTTTTCTTCTCTCTCTTCTCGAGTCTGCAGCGGTGACGGAGAGGAAGCGAAGCTGGTCTCTGCCTCTGAGAGTTGTTCGAGGGTGCGATTAATTGGAGTTATGGGGAAGCCTAGTTCACGGCAAGACTTGTCGACCAAAGCCGACCGCAAATTCGAAAAGAAGCTCGATTTCTATGCCAAGGTTAGAGATACAGTTTCTACCTTGACTACCCAGAAGACTATTGTTAAGAAGAAGAAACCCCGTAGCCGACAGAAGAAACTAAAAGCATATGATCTCTCTGCCCTAACAGAGTTCCTGCCAGAGTTGAAGGGTGAAGAAAAACCAACTCCATCAAATTTCAAGCGAAATTGTAAATCTGTGCGAAAGCTAATATTGAAGGAAGGAAAGCAGTTGACTACAGTTCTTAATCATCCTGCCTTCCAGTCGGATGCCTTAGCTGCCATTCATCAACACTTAGAGAGAACACAGCCAGTGAGAGAGGAGGAAAAACCGGAGAAAAGGAAAAACAAATGTGGAAGCAAGAAGAGGAAAGGTGGAAGCAAGAAGAAAGGACTGAAATCTGAAGGTTCATCTGCACCCGAATCTATGGATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SLX9

Protein Analysis

227

Amino Acids

25.3

Weight (kDa)

10.17

Isoelectric Point (pI)

44.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SLX9 PF15341 71 - 183 6.3e-09 Ribosome biogenesis protein SLX9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 215
AciI CCGC 3 cut(s) 20, 114, 229
AcsI RAATTY 2 cut(s) 233, 418
AcuI CTGAAG 1 cut(s) 666
AgsI TTSAA 3 cut(s) 391, 424, 460
AloI GAACNNNNNNTCC 2 cut(s) 181, 213
AluBI AGCT 5 cut(s) 12, 136, 247, 451, 521
AluI AGCT 5 cut(s) 12, 136, 247, 451, 521
Alw26I GTCTC 1 cut(s) 145
Ama87I CYCGRG 1 cut(s) 102
ApeKI GCWGC 2 cut(s) 111, 521
ApoI RAATTY 2 cut(s) 233, 418
ArsI GACNNNNNNTTYG 2 cut(s) 218, 250
AseI ATTAAT 1 cut(s) 173
AsuHPI GGTGA 2 cut(s) 128, 407
AsuII TTCGAA 1 cut(s) 237
AvaI CYCGRG 1 cut(s) 102
BbsI GAAGAC 1 cut(s) 305
BbvI GCAGC 2 cut(s) 123, 508
BccI CCATC 1 cut(s) 421
BceAI ACGGC 1 cut(s) 218
BcgI CGANNNNNNTGC 2 cut(s) 239, 273
BcoDI GTCTC 1 cut(s) 145
BfaI CTAG 1 cut(s) 195
BfmI CTRYAG 2 cut(s) 109, 480
BisI GCNGC 2 cut(s) 112, 522
BlsI GCNGC 2 cut(s) 113, 523
BmeT110I CYCGRG 1 cut(s) 102
BmsI GCATC 1 cut(s) 502
BpiI GAAGAC 1 cut(s) 305
Bpu10I CCTNAGC 1 cut(s) 517
Bpu14I TTCGAA 1 cut(s) 237
BpuEI CTTGAG 1 cut(s) 34
BsaBI GATNNNNATC 1 cut(s) 76
BsaI GGTCTC 1 cut(s) 145
BsaJI CCNNGG 1 cut(s) 261
BsaWI WCCGGW 1 cut(s) 574
Bse1I ACTGG 2 cut(s) 505, 554
Bse8I GATNNNNATC 1 cut(s) 76
BseDI CCNNGG 1 cut(s) 261
BseGI GGATG 2 cut(s) 493, 517
BseJI GATNNNNATC 1 cut(s) 76
BseMII CTCAG 1 cut(s) 141
BseNI ACTGG 2 cut(s) 505, 554
BseRI GAGGAG 1 cut(s) 578
BseXI GCAGC 2 cut(s) 123, 508
BsgI GTGCAG 1 cut(s) 642
Bsh1285I CGRYCG 1 cut(s) 229
BsiEI CGRYCG 1 cut(s) 229
BsiHKCI CYCGRG 1 cut(s) 102
BsiSI CCGG 1 cut(s) 575
BsmAI GTCTC 1 cut(s) 145
Bso31I GGTCTC 1 cut(s) 145
BsoBI CYCGRG 1 cut(s) 102
Bsp119I TTCGAA 1 cut(s) 237
Bsp143I GATC 1 cut(s) 355
BspACI CCGC 3 cut(s) 20, 114, 229
BspCNI CTCAG 1 cut(s) 142
BspMAI CTGCAG 1 cut(s) 113
BspT104I TTCGAA 1 cut(s) 237
BspTNI GGTCTC 1 cut(s) 145
BsrI ACTGG 2 cut(s) 505, 554
BssECI CCNNGG 1 cut(s) 261
BssMI GATC 1 cut(s) 355
BssT1I CCWWGG 1 cut(s) 261
Bst4CI ACNGT 2 cut(s) 277, 484
Bst6I CTCTTC 2 cut(s) 103, 602
BstBI TTCGAA 1 cut(s) 237
BstDEI CTNAG 3 cut(s) 150, 517, 538
BstF5I GGATG 2 cut(s) 493, 517
BstKTI GATC 1 cut(s) 358
BstMAI GTCTC 1 cut(s) 145
BstMBI GATC 1 cut(s) 355
BstMCI CGRYCG 1 cut(s) 229
BstMWI GCNNNNNNNGC 1 cut(s) 521
BstSFI CTRYAG 2 cut(s) 109, 480
BstV1I GCAGC 2 cut(s) 123, 508
BstV2I GAAGAC 1 cut(s) 305
BtsCI GGATG 2 cut(s) 493, 517
BtsIMutI CAGTG 1 cut(s) 561
CseI GACGC 1 cut(s) 32
CviJI RGCY 9 cut(s) 12, 136, 193, 224, 247, 330, 451, 521, 553
CviKI_1 RGCY 9 cut(s) 12, 136, 193, 224, 247, 330, 451, 521, 553
DdeI CTNAG 3 cut(s) 150, 517, 538
DpnI GATC 1 cut(s) 357
DpnII GATC 1 cut(s) 355
DraI TTTAAA 1 cut(s) 39
Eam1104I CTCTTC 2 cut(s) 103, 602
EarI CTCTTC 2 cut(s) 103, 602
EciI GGCGGA 1 cut(s) 35
Eco130I CCWWGG 1 cut(s) 261
Eco31I GGTCTC 1 cut(s) 145
Eco57I CTGAAG 1 cut(s) 666
Eco88I CYCGRG 1 cut(s) 102
EcoT14I CCWWGG 1 cut(s) 261
ErhI CCWWGG 1 cut(s) 261
FaiI YATR 6 cut(s) 185, 258, 352, 354, 671, 677
FauNDI CATATG 1 cut(s) 352
FblI GTMKAC 1 cut(s) 215
Fnu4HI GCNGC 2 cut(s) 112, 522
FokI GGATG 2 cut(s) 480, 524
Fsp4HI GCNGC 2 cut(s) 112, 522
FspBI CTAG 1 cut(s) 195
GluI GCNGC 2 cut(s) 112, 522
HapII CCGG 1 cut(s) 575
HgaI GACGC 1 cut(s) 32
HincII GTYRAC 2 cut(s) 216, 477
HindII GTYRAC 2 cut(s) 216, 477
HindIII AAGCTT 1 cut(s) 10
HinfI GANTC 2 cut(s) 105, 665
HpaII CCGG 1 cut(s) 575
HphI GGTGA 2 cut(s) 128, 407
Hpy166II GTNNAC 3 cut(s) 200, 216, 477
Hpy188I TCNGA 3 cut(s) 151, 511, 646
Hpy188III TCNNGA 1 cut(s) 102
Hpy8I GTNNAC 3 cut(s) 200, 216, 477
HpyAV CCTTC 5 cut(s) 385, 454, 458, 511, 641
HpyCH4III ACNGT 2 cut(s) 277, 484
HpyCH4V TGCA 2 cut(s) 111, 659
HpyF10VI GCNNNNNNNGC 1 cut(s) 521
HpyF3I CTNAG 3 cut(s) 150, 517, 538
Kzo9I GATC 1 cut(s) 355
LpnPI CCDG 9 cut(s) 66, 122, 308, 392, 396, 510, 518, 567, 588
Lsp1109I GCAGC 2 cut(s) 123, 508
LweI GCATC 1 cut(s) 502
MaeI CTAG 1 cut(s) 195
MaeIII GTNAC 1 cut(s) 116
MalI GATC 1 cut(s) 357
MboI GATC 1 cut(s) 355
MboII GAAGA 9 cut(s) 81, 90, 310, 325, 328, 349, 410, 619, 640
MluCI AATT 4 cut(s) 174, 233, 418, 430
MlyI GAGTC 1 cut(s) 114
MmeI TCCRAC 1 cut(s) 489
MnlI CCTC 7 cut(s) 9, 118, 156, 157, 556, 559, 603
MseI TTAA 5 cut(s) 3, 38, 173, 309, 489
MspA1I CMGCKG 1 cut(s) 114
MspI CCGG 1 cut(s) 575
MwoI GCNNNNNNNGC 1 cut(s) 521
NdeI CATATG 1 cut(s) 352
NdeII GATC 1 cut(s) 355
NmuCI GTSAC 1 cut(s) 116
NspV TTCGAA 1 cut(s) 237
PaeR7I CTCGAG 1 cut(s) 102
PfeI GAWTC 1 cut(s) 665
PflFI GACNNNGTC 1 cut(s) 26
PkrI GCNGC 2 cut(s) 113, 523
PleI GAGTC 1 cut(s) 113
PpsI GAGTC 1 cut(s) 113
PshBI ATTAAT 1 cut(s) 173
PstI CTGCAG 1 cut(s) 113
PsyI GACNNNGTC 1 cut(s) 26
SalI GTCGAC 1 cut(s) 214
SaqAI TTAA 5 cut(s) 3, 38, 173, 309, 489
SatI GCNGC 2 cut(s) 112, 522
Sau3AI GATC 1 cut(s) 355
SchI GAGTC 1 cut(s) 114
SfaNI GCATC 1 cut(s) 502
SfcI CTRYAG 2 cut(s) 109, 480
Sfr274I CTCGAG 1 cut(s) 102
SfuI TTCGAA 1 cut(s) 237
SlaI CTCGAG 1 cut(s) 102
SmlI CTYRAG 2 cut(s) 13, 102
SmoI CTYRAG 2 cut(s) 13, 102
Sse9I AATT 4 cut(s) 174, 233, 418, 430
SsiI CCGC 3 cut(s) 20, 114, 229
SspI AATATT 1 cut(s) 456
SspMI CTAG 1 cut(s) 195
StyI CCWWGG 1 cut(s) 261
TaaI ACNGT 2 cut(s) 277, 484
TaqI TCGA 6 cut(s) 70, 103, 161, 215, 237, 249
TasI AATT 4 cut(s) 174, 233, 418, 430
TfiI GAWTC 1 cut(s) 665
Tru1I TTAA 5 cut(s) 3, 38, 173, 309, 489
Tru9I TTAA 5 cut(s) 3, 38, 173, 309, 489
TscAI CASTG 1 cut(s) 561
TseFI GTSAC 1 cut(s) 116
TseI GCWGC 2 cut(s) 111, 521
Tsp45I GTSAC 1 cut(s) 116
TspDTI ATGAA 2 cut(s) 518, 642
TspGWI ACGGA 1 cut(s) 135
TspRI CASTG 1 cut(s) 561
Tth111I GACNNNGTC 1 cut(s) 26
VspI ATTAAT 1 cut(s) 173
XapI RAATTY 2 cut(s) 233, 418
XhoI CTCGAG 1 cut(s) 102
XmiI GTMKAC 1 cut(s) 215
XspI CTAG 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.