Rh6CG068700

Ribosome biogenesis protein SLX9

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0006226
Physical Location & Seq
Reverse (-)
6762490 .. 6763383
894 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG068700.1

Sequence Viewer

Length: 363 bp
ATGCATAATACAGATGTTAGAGATAGAGTTGCGGCCTTGAGTACCCAGAAGGCTATTGTCAAGAAGAAGAAAGTATGTAGCCAGAAGAAGAAACTGAAAGCATATGATCTCTCTTCCTTTTCTGAGTTCCTGCCTGAGTTTGAGGATTCACAAGAACCAGCTCCTACCATTGATTTCAAGCTAATATTGAAGGAAGCAGAGCAGTTGGGTAGAGTTCTTAATCACCCTGCTTTCCAGGCGGATCCGATGGCAGCTATTTATGAACACTTGAAGAACACACAACCTGTGATGGCTGAGCAACGGAAGAAAAGGAAAAAAAAAATGGAAGCGAAAACAGGAAACAGAATAAATCTAAGGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SLX9

Protein Analysis

120

Amino Acids

13.81

Weight (kDa)

9.83

Isoelectric Point (pI)

41.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SLX9 PF15341 60 - 93 2.1e-06 Ribosome biogenesis protein SLX9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 32, 239
AclWI GGATC 2 cut(s) 236, 249
AfaI GTAC 1 cut(s) 43
AgsI TTSAA 3 cut(s) 178, 190, 271
AjnI CCWGG 1 cut(s) 234
AluBI AGCT 3 cut(s) 161, 181, 254
AluI AGCT 3 cut(s) 161, 181, 254
AlwI GGATC 2 cut(s) 236, 249
AoxI GGCC 1 cut(s) 33
ApeKI GCWGC 1 cut(s) 251
AsuHPI GGTGA 1 cut(s) 215
BamHI GGATCC 1 cut(s) 241
BbvI GCAGC 1 cut(s) 263
BccI CCATC 2 cut(s) 241, 283
BciT130I CCWGG 1 cut(s) 236
BisI GCNGC 2 cut(s) 33, 252
BlpI GCTNAGC 1 cut(s) 294
BlsI GCNGC 2 cut(s) 34, 253
Bme1390I CCNGG 1 cut(s) 236
BmiI GGNNCC 1 cut(s) 243
BmrFI CCNGG 1 cut(s) 236
Bpu1102I GCTNAGC 1 cut(s) 294
BpuEI CTTGAG 1 cut(s) 58
BseBI CCWGG 1 cut(s) 236
BseMII CTCAG 3 cut(s) 114, 126, 285
BseXI GCAGC 1 cut(s) 263
BshFI GGCC 1 cut(s) 35
BsnI GGCC 1 cut(s) 35
Bsp143I GATC 2 cut(s) 106, 241
Bsp1720I GCTNAGC 1 cut(s) 294
BspACI CCGC 2 cut(s) 32, 239
BspANI GGCC 1 cut(s) 35
BspCNI CTCAG 3 cut(s) 115, 127, 286
BspLI GGNNCC 1 cut(s) 243
BspPI GGATC 2 cut(s) 236, 249
BssMI GATC 2 cut(s) 106, 241
Bst2UI CCWGG 1 cut(s) 236
Bst6I CTCTTC 1 cut(s) 118
BstDEI CTNAG 4 cut(s) 123, 135, 294, 353
BstKTI GATC 2 cut(s) 109, 244
BstMBI GATC 2 cut(s) 106, 241
BstMWI GCNNNNNNNGC 1 cut(s) 236
BstNI CCWGG 1 cut(s) 236
BstSCI CCNGG 1 cut(s) 234
BstV1I GCAGC 1 cut(s) 263
BstX2I RGATCY 1 cut(s) 241
BstYI RGATCY 1 cut(s) 241
BsuRI GGCC 1 cut(s) 35
Csp6I GTAC 1 cut(s) 42
CviJI RGCY 7 cut(s) 35, 53, 81, 161, 181, 254, 293
CviKI_1 RGCY 7 cut(s) 35, 53, 81, 161, 181, 254, 293
CviQI GTAC 1 cut(s) 42
DdeI CTNAG 4 cut(s) 123, 135, 294, 353
DpnI GATC 2 cut(s) 108, 243
DpnII GATC 2 cut(s) 106, 241
Eam1104I CTCTTC 1 cut(s) 118
EarI CTCTTC 1 cut(s) 118
EciI GGCGGA 1 cut(s) 254
EcoRII CCWGG 1 cut(s) 234
EcoT22I ATGCAT 1 cut(s) 6
FaiI YATR 5 cut(s) 6, 76, 103, 105, 261
FauNDI CATATG 1 cut(s) 103
Fnu4HI GCNGC 2 cut(s) 33, 252
Fsp4HI GCNGC 2 cut(s) 33, 252
GluI GCNGC 2 cut(s) 33, 252
HaeIII GGCC 1 cut(s) 35
HinfI GANTC 1 cut(s) 146
HphI GGTGA 1 cut(s) 215
Hpy188I TCNGA 2 cut(s) 124, 246
Hpy188III TCNNGA 1 cut(s) 61
HpyAV CCTTC 2 cut(s) 43, 184
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 1 cut(s) 236
HpyF3I CTNAG 4 cut(s) 123, 135, 294, 353
Kzo9I GATC 2 cut(s) 106, 241
LmnI GCTCC 1 cut(s) 166
Lsp1109I GCAGC 1 cut(s) 263
MalI GATC 2 cut(s) 108, 243
MboI GATC 2 cut(s) 106, 241
MboII GAAGA 7 cut(s) 76, 79, 97, 100, 105, 283, 316
MflI RGATCY 1 cut(s) 241
MnlI CCTC 1 cut(s) 136
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 219
MspR9I CCNGG 1 cut(s) 236
MvaI CCWGG 1 cut(s) 236
MwoI GCNNNNNNNGC 1 cut(s) 236
NdeI CATATG 1 cut(s) 103
NdeII GATC 2 cut(s) 106, 241
NlaIV GGNNCC 1 cut(s) 243
NsiI ATGCAT 1 cut(s) 6
PfeI GAWTC 1 cut(s) 146
PkrI GCNGC 2 cut(s) 34, 253
Psp6I CCWGG 1 cut(s) 234
PspGI CCWGG 1 cut(s) 234
PspN4I GGNNCC 1 cut(s) 243
PsuI RGATCY 1 cut(s) 241
RsaI GTAC 1 cut(s) 43
RsaNI GTAC 1 cut(s) 42
SaqAI TTAA 1 cut(s) 219
SatI GCNGC 2 cut(s) 33, 252
Sau3AI GATC 2 cut(s) 106, 241
ScrFI CCNGG 1 cut(s) 236
SetI ASST 4 cut(s) 163, 183, 256, 286
SmlI CTYRAG 1 cut(s) 37
SmoI CTYRAG 1 cut(s) 37
SsiI CCGC 2 cut(s) 32, 239
SspI AATATT 1 cut(s) 186
StyD4I CCNGG 1 cut(s) 234
TauI GCSGC 1 cut(s) 35
TfiI GAWTC 1 cut(s) 146
Tru1I TTAA 1 cut(s) 219
Tru9I TTAA 1 cut(s) 219
TseI GCWGC 1 cut(s) 251
TspDTI ATGAA 1 cut(s) 276
TspGWI ACGGA 1 cut(s) 316
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.