Rh6BG070000

Ribosome biogenesis protein SLX9

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0006226
Physical Location & Seq
Reverse (-)
10608442 .. 10613753
5312 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG070000.1

Sequence Viewer

Length: 606 bp
ATGCGACCTGCTTGGGTTGAAGAACTGGGAGACCAGGCTATCCAAGACGGCAGTGTCTTTAGGTCAAGACCAGTCGCTGCTCCAGTGGATCTCGGGCGATGTGGACAATGCGCTAATACCCGGCTACAAATCGACGGCGTCGAGTTCAAGAAGAAGGCTCTGGAGCCTCAGCTTCAGCTTCTCGAAGACAGCGACAAGGCCGCGACCCTCGTCTTCATTTTCCACCTCAGTCGTAATTTCCAAATGCATAATACAGATGTTAGAGATAGAGTTGCGGCCTTGAGTACCCAGAAGGCTATTGTCAAGAAGAAGAAAGTATGTAGCCAGAAGAAGAAACTGAAAGCATATGATCTCTCTTCCTTTTCTGAGTTCCTGCCTGAGTTTGAGGATTCACAAGAACCAGCTCCTACCATTGATTTCAAGCTAATATTGAAGGAAGCAGAGCAGTTGGGTAGAGTTCTTAATCACCCTGCTTTCCAGGGAGATCCGATGGCAGCTATTTGTGAACACTTTAAGAACACACAACCTGTGATGGCTGAGCAACGGAAGAAACAGGAAAAAAAAATGGAAGTGAAAACAGGAAACAGAATAAATCTAAGGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SLX9

Protein Analysis

201

Amino Acids

22.84

Weight (kDa)

9.14

Isoelectric Point (pI)

45.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 53
Acc36I ACCTGC 1 cut(s) 16
AccII CGCG 1 cut(s) 203
AciI CCGC 2 cut(s) 201, 275
AclWI GGATC 2 cut(s) 96, 479
AcuI CTGAAG 1 cut(s) 158
AcyI GRCGYC 1 cut(s) 138
AfaI GTAC 1 cut(s) 286
AgsI TTSAA 4 cut(s) 20, 148, 421, 433
AjnI CCWGG 2 cut(s) 33, 477
AluBI AGCT 5 cut(s) 172, 178, 404, 424, 497
AluI AGCT 5 cut(s) 172, 178, 404, 424, 497
Alw26I GTCTC 1 cut(s) 24
AlwI GGATC 2 cut(s) 96, 479
AlwNI CAGNNNCTG 1 cut(s) 77
Ama87I CYCGRG 1 cut(s) 92
AoxI GGCC 2 cut(s) 198, 276
ApeKI GCWGC 2 cut(s) 77, 494
AspLEI GCGC 1 cut(s) 113
AsuC2I CCSGG 1 cut(s) 121
AsuHPI GGTGA 1 cut(s) 458
AvaI CYCGRG 1 cut(s) 92
BbsI GAAGAC 2 cut(s) 192, 205
BbvCI CCTCAGC 1 cut(s) 168
BbvI GCAGC 2 cut(s) 64, 506
BccI CCATC 2 cut(s) 484, 526
BceAI ACGGC 2 cut(s) 64, 151
BciT130I CCWGG 2 cut(s) 35, 479
BcnI CCSGG 1 cut(s) 121
BcoDI GTCTC 1 cut(s) 24
BfuAI ACCTGC 1 cut(s) 16
BisI GCNGC 4 cut(s) 78, 201, 276, 495
BlpI GCTNAGC 1 cut(s) 537
BlsI GCNGC 4 cut(s) 79, 202, 277, 496
Bme1390I CCNGG 3 cut(s) 35, 121, 479
BmeT110I CYCGRG 1 cut(s) 92
BmiI GGNNCC 1 cut(s) 165
BmrFI CCNGG 3 cut(s) 35, 121, 479
BmrI ACTGGG 1 cut(s) 35
BmuI ACTGGG 1 cut(s) 35
BoxI GACNNNNGTC 1 cut(s) 209
BpiI GAAGAC 2 cut(s) 192, 205
BpmI CTGGAG 2 cut(s) 66, 182
Bpu10I CCTNAGC 1 cut(s) 168
Bpu1102I GCTNAGC 1 cut(s) 537
BpuEI CTTGAG 1 cut(s) 301
BpuMI CCSGG 1 cut(s) 121
BsaHI GRCGYC 1 cut(s) 138
BsaI GGTCTC 1 cut(s) 24
BsaJI CCNNGG 1 cut(s) 478
Bse1I ACTGG 3 cut(s) 30, 71, 83
BseBI CCWGG 2 cut(s) 35, 479
BseDI CCNNGG 1 cut(s) 478
BseMII CTCAG 5 cut(s) 182, 241, 357, 369, 528
BseNI ACTGG 3 cut(s) 30, 71, 83
BseXI GCAGC 2 cut(s) 64, 506
Bsh1236I CGCG 1 cut(s) 203
BshFI GGCC 2 cut(s) 200, 278
BsiHKCI CYCGRG 1 cut(s) 92
BsiSI CCGG 1 cut(s) 121
BsmAI GTCTC 1 cut(s) 24
BsnI GGCC 2 cut(s) 200, 278
Bso31I GGTCTC 1 cut(s) 24
BsoBI CYCGRG 1 cut(s) 92
Bsp143I GATC 3 cut(s) 88, 349, 484
Bsp1720I GCTNAGC 1 cut(s) 537
BspACI CCGC 2 cut(s) 201, 275
BspANI GGCC 2 cut(s) 200, 278
BspCNI CTCAG 5 cut(s) 181, 240, 358, 370, 529
BspFNI CGCG 1 cut(s) 203
BspLI GGNNCC 1 cut(s) 165
BspMI ACCTGC 1 cut(s) 16
BspPI GGATC 2 cut(s) 96, 479
BspTNI GGTCTC 1 cut(s) 24
BsrI ACTGG 3 cut(s) 30, 71, 83
BssECI CCNNGG 1 cut(s) 478
BssMI GATC 3 cut(s) 88, 349, 484
BssNI GRCGYC 1 cut(s) 138
Bst2UI CCWGG 2 cut(s) 35, 479
Bst6I CTCTTC 1 cut(s) 361
BstACI GRCGYC 1 cut(s) 138
BstDEI CTNAG 6 cut(s) 168, 227, 366, 378, 537, 596
BstFNI CGCG 1 cut(s) 203
BstHHI GCGC 1 cut(s) 113
BstKTI GATC 3 cut(s) 91, 352, 487
BstMAI GTCTC 1 cut(s) 24
BstMBI GATC 3 cut(s) 88, 349, 484
BstNI CCWGG 2 cut(s) 35, 479
BstPAI GACNNNNGTC 1 cut(s) 209
BstSCI CCNGG 3 cut(s) 33, 119, 477
BstUI CGCG 1 cut(s) 203
BstV1I GCAGC 2 cut(s) 64, 506
BstV2I GAAGAC 2 cut(s) 192, 205
BstX2I RGATCY 2 cut(s) 88, 484
BstYI RGATCY 2 cut(s) 88, 484
BsuRI GGCC 2 cut(s) 200, 278
BtgZI GCGATG 1 cut(s) 112
BtsI GCAGTG 1 cut(s) 58
BtsIMutI CAGTG 2 cut(s) 58, 90
BveI ACCTGC 1 cut(s) 16
CaiI CAGNNNCTG 1 cut(s) 77
CfoI GCGC 1 cut(s) 113
CseI GACGC 1 cut(s) 127
Csp6I GTAC 1 cut(s) 285
CviQI GTAC 1 cut(s) 285
DdeI CTNAG 6 cut(s) 168, 227, 366, 378, 537, 596
DpnI GATC 3 cut(s) 90, 351, 486
DpnII GATC 3 cut(s) 88, 349, 484
DrdI GACNNNNNNGTC 1 cut(s) 53
DseDI GACNNNNNNGTC 1 cut(s) 53
Eam1104I CTCTTC 1 cut(s) 361
EarI CTCTTC 1 cut(s) 361
Eco31I GGTCTC 1 cut(s) 24
Eco57I CTGAAG 1 cut(s) 158
Eco88I CYCGRG 1 cut(s) 92
EcoRII CCWGG 2 cut(s) 33, 477
EcoT22I ATGCAT 1 cut(s) 249
FaiI YATR 4 cut(s) 249, 319, 346, 348
FauNDI CATATG 1 cut(s) 346
Fnu4HI GCNGC 4 cut(s) 78, 201, 276, 495
Fsp4HI GCNGC 4 cut(s) 78, 201, 276, 495
GlaI GCGC 1 cut(s) 112
GluI GCNGC 4 cut(s) 78, 201, 276, 495
GsuI CTGGAG 2 cut(s) 66, 182
HaeIII GGCC 2 cut(s) 200, 278
HapII CCGG 1 cut(s) 121
HgaI GACGC 1 cut(s) 127
HhaI GCGC 1 cut(s) 113
Hin1I GRCGYC 1 cut(s) 138
Hin6I GCGC 1 cut(s) 111
HinP1I GCGC 1 cut(s) 111
HinfI GANTC 1 cut(s) 389
HpaII CCGG 1 cut(s) 121
HphI GGTGA 1 cut(s) 458
Hpy166II GTNNAC 2 cut(s) 104, 506
Hpy188I TCNGA 2 cut(s) 367, 489
Hpy188III TCNNGA 5 cut(s) 66, 148, 161, 182, 304
Hpy8I GTNNAC 2 cut(s) 104, 506
Hpy99I CGWCG 2 cut(s) 137, 143
HpyAV CCTTC 3 cut(s) 148, 286, 427
HpyCH4V TGCA 1 cut(s) 247
HpyF3I CTNAG 6 cut(s) 168, 227, 366, 378, 537, 596
Hsp92I GRCGYC 1 cut(s) 138
HspAI GCGC 1 cut(s) 111
Kzo9I GATC 3 cut(s) 88, 349, 484
LmnI GCTCC 3 cut(s) 85, 163, 409
Lsp1109I GCAGC 2 cut(s) 64, 506
MalI GATC 3 cut(s) 90, 351, 486
MboI GATC 3 cut(s) 88, 349, 484
MflI RGATCY 2 cut(s) 88, 484
MluCI AATT 1 cut(s) 235
MnlI CCTC 4 cut(s) 177, 218, 236, 379
Mph1103I ATGCAT 1 cut(s) 249
MseI TTAA 2 cut(s) 462, 513
MspI CCGG 1 cut(s) 121
MspR9I CCNGG 3 cut(s) 35, 121, 479
MvaI CCWGG 2 cut(s) 35, 479
MvnI CGCG 1 cut(s) 203
NciI CCSGG 1 cut(s) 121
NdeI CATATG 1 cut(s) 346
NdeII GATC 3 cut(s) 88, 349, 484
NlaIV GGNNCC 1 cut(s) 165
NsiI ATGCAT 1 cut(s) 249
PcsI WCGNNNNNNNCGW 2 cut(s) 138, 189
PfeI GAWTC 1 cut(s) 389
PflFI GACNNNGTC 1 cut(s) 137
PkrI GCNGC 4 cut(s) 79, 202, 277, 496
PshAI GACNNNNGTC 1 cut(s) 209
Psp6I CCWGG 2 cut(s) 33, 477
PspGI CCWGG 2 cut(s) 33, 477
PspN4I GGNNCC 1 cut(s) 165
PstNI CAGNNNCTG 1 cut(s) 77
PsuI RGATCY 2 cut(s) 88, 484
PsyI GACNNNGTC 1 cut(s) 137
RsaI GTAC 1 cut(s) 286
RsaNI GTAC 1 cut(s) 285
SaqAI TTAA 2 cut(s) 462, 513
SatI GCNGC 4 cut(s) 78, 201, 276, 495
Sau3AI GATC 3 cut(s) 88, 349, 484
ScrFI CCNGG 3 cut(s) 35, 121, 479
SetI ASST 9 cut(s) 10, 65, 174, 180, 228, 406, 426, 499, 529
SmlI CTYRAG 1 cut(s) 280
SmoI CTYRAG 1 cut(s) 280
Sse9I AATT 1 cut(s) 235
SsiI CCGC 2 cut(s) 201, 275
SspI AATATT 1 cut(s) 429
StyD4I CCNGG 3 cut(s) 33, 119, 477
TaqI TCGA 3 cut(s) 132, 141, 183
TasI AATT 1 cut(s) 235
TauI GCSGC 2 cut(s) 203, 278
TfiI GAWTC 1 cut(s) 389
Tru1I TTAA 2 cut(s) 462, 513
Tru9I TTAA 2 cut(s) 462, 513
TscAI CASTG 2 cut(s) 58, 90
TseI GCWGC 2 cut(s) 77, 494
TspDTI ATGAA 1 cut(s) 205
TspGWI ACGGA 1 cut(s) 559
TspRI CASTG 2 cut(s) 58, 90
Tth111I GACNNNGTC 1 cut(s) 137
Zsp2I ATGCAT 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.