Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004638.1

Orthogroup ID

OG0006226

Physical Location & Seq

Genomic Coordinates Forward (+)

53483 .. 58450

Gene Structure 4968 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004638.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

atgggcaagcctggttcacgtcaagacttgtcgaccaaagccgaccgcaaattcgaaaagaagctcgatttctatgctaaggttagagatacagtttctaccttgagtacccagaaaactattgttaagaagaagaaactccgtagccggcagaagaaactgaaagcatatgatctctctgtcctaacagagttcctgccggagttgaagggtgaacagaagccaactcctccatcagacttgaagcgaaattgtaaatctatgcgaaagctaatattgaaggaaggaaagcagttgactacagttcttaatcatcccgccttccagtcggatgccttagctgccattcatcaacacttagagaggacacagccagtgagagaggaggaaaaaccagagaaaaggaaaaacaaatgcggaagcaagaaaaggaaaggtggaagcaagaagaaagggatgaaacctgaaggtccatctgtaccccaatctatggatatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SLX9

Protein Analysis

166

Amino Acids

18.93

Weight (kDa)

10.21

Isoelectric Point (pI)

47.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006226)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01640 AT2G01640
fragaria_vesca	FvH4_5g29540
malus_domestica	MD05G1087800.v1.1 MD08G1229200.v1.1 MD15G1423200.v1.1
prunus_persica	Prupe.1G568500_v2.0.a1
pyrus_communis	pycom05g08730 pycom08g19960 pycom15g37500
rosa_chinensis	RchiOBHm_Chr7g0222441
rosa_laevigata	RLG00000002059
rosa_multiflora	Rmu_sc0004638.1_g000012
rosa_roxburghii	Rroxscaffold_3G00236950
rosa_rugosa	Rorug05G0559400 Rorug07G0208600.1 Rorug07G0208700
rosa_samantha	Rh6AG077900 Rh6BG070000 Rh6CG068700 Rh6DG065600 Rh7AG350800 Rh7BG341700 Rh7CG368100 Rh7DG347700
rosa_wichuraiana	Rw7G029630 Rw7G029970

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	490
AccI	GTMKAC	1 cut(s)	32
AciI	CCGC	3 cut(s)	46, 318, 417
AcsI	RAATTY	1 cut(s)	50
AcuI	CTGAAG	1 cut(s)	486
AfaI	GTAC	2 cut(s)	109, 480
AfiI	CCNNNNNNNGG	1 cut(s)	490
AgsI	TTSAA	3 cut(s)	208, 244, 280
AjiI	CACGTC	1 cut(s)	20
AjnI	CCWGG	1 cut(s)	10
AluBI	AGCT	3 cut(s)	64, 271, 341
AluI	AGCT	3 cut(s)	64, 271, 341
ApeKI	GCWGC	1 cut(s)	341
ApoI	RAATTY	1 cut(s)	50
ArsI	GACNNNNNNTTYG	2 cut(s)	35, 67
AspS9I	GGNCC	1 cut(s)	470
AsuHPI	GGTGA	1 cut(s)	224
AsuII	TTCGAA	1 cut(s)	54
AvaII	GGWCC	1 cut(s)	470
BbvI	GCAGC	1 cut(s)	328
BccI	CCATC	2 cut(s)	241, 481
BcgI	CGANNNNNNTGC	2 cut(s)	56, 90
BciT130I	CCWGG	1 cut(s)	12
BfmI	CTRYAG	1 cut(s)	300
BisI	GCNGC	1 cut(s)	342
BlsI	GCNGC	1 cut(s)	343
Bme1390I	CCNGG	1 cut(s)	12
Bme18I	GGWCC	1 cut(s)	470
BmgBI	CACGTC	1 cut(s)	20
BmgT120I	GGNCC	1 cut(s)	470
BmrFI	CCNGG	1 cut(s)	12
BmsI	GCATC	1 cut(s)	322
Bpu10I	CCTNAGC	2 cut(s)	78, 337
Bpu14I	TTCGAA	1 cut(s)	54
BpuEI	CTTGAG	1 cut(s)	124
Bsc4I	CCNNNNNNNGG	1 cut(s)	490
Bse118I	RCCGGY	1 cut(s)	147
Bse1I	ACTGG	2 cut(s)	325, 374
BseBI	CCWGG	1 cut(s)	12
BseGI	GGATG	3 cut(s)	313, 337, 462
BseLI	CCNNNNNNNGG	1 cut(s)	490
BseNI	ACTGG	2 cut(s)	325, 374
BseRI	GAGGAG	2 cut(s)	219, 398
BseXI	GCAGC	1 cut(s)	328
Bsh1285I	CGRYCG	1 cut(s)	46
BsiEI	CGRYCG	1 cut(s)	46
BsiSI	CCGG	2 cut(s)	148, 200
BslI	CCNNNNNNNGG	1 cut(s)	490
Bsp119I	TTCGAA	1 cut(s)	54
Bsp143I	GATC	1 cut(s)	172
BspACI	CCGC	3 cut(s)	46, 318, 417
BspT104I	TTCGAA	1 cut(s)	54
BsrFI	RCCGGY	1 cut(s)	147
BsrI	ACTGG	2 cut(s)	325, 374
BssAI	RCCGGY	1 cut(s)	147
BssMI	GATC	1 cut(s)	172
Bst2UI	CCWGG	1 cut(s)	12
Bst4CI	ACNGT	2 cut(s)	94, 304
BstBI	TTCGAA	1 cut(s)	54
BstC8I	GCNNGC	2 cut(s)	8, 149
BstDEI	CTNAG	3 cut(s)	78, 337, 358
BstF5I	GGATG	3 cut(s)	313, 337, 462
BstKTI	GATC	1 cut(s)	175
BstMBI	GATC	1 cut(s)	172
BstMCI	CGRYCG	1 cut(s)	46
BstMWI	GCNNNNNNNGC	1 cut(s)	341
BstNI	CCWGG	1 cut(s)	12
BstSCI	CCNGG	1 cut(s)	10
BstSFI	CTRYAG	1 cut(s)	300
BstV1I	GCAGC	1 cut(s)	328
BtrI	CACGTC	1 cut(s)	20
BtsCI	GGATG	3 cut(s)	313, 337, 462
BtsIMutI	CAGTG	1 cut(s)	381
Cac8I	GCNNGC	2 cut(s)	8, 149
Cfr10I	RCCGGY	1 cut(s)	147
Cfr13I	GGNCC	1 cut(s)	470
Csp6I	GTAC	2 cut(s)	108, 479
CviJI	RGCY	8 cut(s)	10, 41, 64, 147, 223, 271, 341, 373
CviKI_1	RGCY	8 cut(s)	10, 41, 64, 147, 223, 271, 341, 373
CviQI	GTAC	2 cut(s)	108, 479
DdeI	CTNAG	3 cut(s)	78, 337, 358
DpnI	GATC	1 cut(s)	174
DpnII	GATC	1 cut(s)	172
Eco47I	GGWCC	1 cut(s)	470
Eco57I	CTGAAG	1 cut(s)	486
EcoRII	CCWGG	1 cut(s)	10
FaiI	YATR	6 cut(s)	75, 169, 171, 263, 491, 497
FauI	CCCGC	1 cut(s)	325
FauNDI	CATATG	1 cut(s)	169
FblI	GTMKAC	1 cut(s)	32
Fnu4HI	GCNGC	1 cut(s)	342
FokI	GGATG	3 cut(s)	300, 344, 469
Fsp4HI	GCNGC	1 cut(s)	342
GluI	GCNGC	1 cut(s)	342
HapII	CCGG	2 cut(s)	148, 200
HincII	GTYRAC	2 cut(s)	33, 297
HindII	GTYRAC	2 cut(s)	33, 297
HpaII	CCGG	2 cut(s)	148, 200
HphI	GGTGA	1 cut(s)	224
Hpy166II	GTNNAC	4 cut(s)	17, 33, 215, 297
Hpy188I	TCNGA	2 cut(s)	238, 331
Hpy188III	TCNNGA	1 cut(s)	23
Hpy8I	GTNNAC	4 cut(s)	17, 33, 215, 297
HpyAV	CCTTC	5 cut(s)	202, 274, 278, 331, 461
HpyCH4III	ACNGT	2 cut(s)	94, 304
HpyCH4IV	ACGT	1 cut(s)	19
HpyF10VI	GCNNNNNNNGC	1 cut(s)	341
HpyF3I	CTNAG	3 cut(s)	78, 337, 358
HpySE526I	ACGT	1 cut(s)	19
KroI	GCCGGC	1 cut(s)	147
KroNI	GCCGGC	1 cut(s)	149
Kzo9I	GATC	1 cut(s)	172
LpnPI	CCDG	9 cut(s)	24, 125, 161, 209, 213, 338, 387, 408, 477
Lsp1109I	GCAGC	1 cut(s)	328
LweI	GCATC	1 cut(s)	322
MaeII	ACGT	1 cut(s)	19
MalI	GATC	1 cut(s)	174
MboI	GATC	1 cut(s)	172
MboII	GAAGA	4 cut(s)	142, 145, 166, 460
MluCI	AATT	2 cut(s)	50, 250
MmeI	TCCRAC	1 cut(s)	309
MnlI	CCTC	4 cut(s)	240, 357, 376, 379
MroNI	GCCGGC	1 cut(s)	147
MseI	TTAA	2 cut(s)	126, 309
MspI	CCGG	2 cut(s)	148, 200
MspR9I	CCNGG	1 cut(s)	12
MvaI	CCWGG	1 cut(s)	12
MwoI	GCNNNNNNNGC	1 cut(s)	341
NaeI	GCCGGC	1 cut(s)	149
NdeI	CATATG	1 cut(s)	169
NdeII	GATC	1 cut(s)	172
NgoMIV	GCCGGC	1 cut(s)	147
NspV	TTCGAA	1 cut(s)	54
PdiI	GCCGGC	1 cut(s)	149
PflMI	CCANNNNNTGG	1 cut(s)	490
PkrI	GCNGC	1 cut(s)	343
Psp6I	CCWGG	1 cut(s)	10
PspGI	CCWGG	1 cut(s)	10
PspPI	GGNCC	1 cut(s)	470
RsaI	GTAC	2 cut(s)	109, 480
RsaNI	GTAC	2 cut(s)	108, 479
SalI	GTCGAC	1 cut(s)	31
SaqAI	TTAA	2 cut(s)	126, 309
SatI	GCNGC	1 cut(s)	342
Sau3AI	GATC	1 cut(s)	172
Sau96I	GGNCC	1 cut(s)	470
ScrFI	CCNGG	1 cut(s)	12
SetI	ASST	9 cut(s)	22, 66, 84, 104, 273, 343, 439, 466, 472
SfaNI	GCATC	1 cut(s)	322
SfcI	CTRYAG	1 cut(s)	300
SfuI	TTCGAA	1 cut(s)	54
SinI	GGWCC	1 cut(s)	470
SmlI	CTYRAG	1 cut(s)	103
SmoI	CTYRAG	1 cut(s)	103
Sse9I	AATT	2 cut(s)	50, 250
SsiI	CCGC	3 cut(s)	46, 318, 417
SspI	AATATT	1 cut(s)	276
StyD4I	CCNGG	1 cut(s)	10
TaaI	ACNGT	2 cut(s)	94, 304
TaiI	ACGT	1 cut(s)	22
TaqI	TCGA	3 cut(s)	32, 54, 66
TasI	AATT	2 cut(s)	50, 250
Tru1I	TTAA	2 cut(s)	126, 309
Tru9I	TTAA	2 cut(s)	126, 309
TscAI	CASTG	1 cut(s)	381
TseI	GCWGC	1 cut(s)	341
TspDTI	ATGAA	2 cut(s)	338, 473
TspGWI	ACGGA	1 cut(s)	131
TspRI	CASTG	1 cut(s)	381
Van91I	CCANNNNNTGG	1 cut(s)	490
VpaK11BI	GGWCC	1 cut(s)	470
XapI	RAATTY	1 cut(s)	50
XmiI	GTMKAC	1 cut(s)	32

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.