RLG00000002059

Ribosome biogenesis protein SLX9

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0006226
Physical Location & Seq
Reverse (-)
24843225 .. 24848001
4777 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002059

Sequence Viewer

Length: 501 bp
ATGGGCAAGCCTGGTTCACGGCAAGACTTGTCGACCAAAGCCGACCGCAAATTCGAAAAGAAGCTCGATTTCTATGCTAAGGTTAGAGATACAGTTTCTACCTTGAGTACCCAGAAAACTATTGTTAAGAAGAAGAAACTCCGTAGCCGGCAGAAGAAACTGAAAGCATATGATCTCTCTGCCCTAACAGAGTTCCTGCCGGAGTTGAAGGGTGAACAGAAGCCAACTCCTCCATCAGACTTAAAGCGAAATTGTAAATCTATGCGAAAGCTAATATTGAAGGAAGGAAAGCAGTTGACTACAGTTCTTAATCATCCCGCCTTCCAGTCAGATGCCTTAGCTGCCATTCATCAACACTTAGAGAGGACACAGCCAGTGAGAGAGGAGGAAAAACCAGAGAAAAGGAAAAACAAATGTGGAAGTAAGAAGAGGAAAGGTGGAAGCAAGAAGAAAGGGGTGAAATCTGAAGGTCCCTCTGGACACCAATCTATGGATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
SLX9

Protein Analysis

167

Amino Acids

18.86

Weight (kDa)

10.21

Isoelectric Point (pI)

45.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SLX9 PF15341 10 - 123 5.8e-10 Ribosome biogenesis protein SLX9
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 490
AccI GTMKAC 1 cut(s) 32
AciI CCGC 2 cut(s) 46, 318
AcsI RAATTY 1 cut(s) 50
AcuI CTGAAG 1 cut(s) 486
AfaI GTAC 1 cut(s) 109
AfiI CCNNNNNNNGG 1 cut(s) 490
AgsI TTSAA 2 cut(s) 208, 280
AjnI CCWGG 1 cut(s) 10
AluBI AGCT 3 cut(s) 64, 271, 341
AluI AGCT 3 cut(s) 64, 271, 341
ApeKI GCWGC 1 cut(s) 341
ApoI RAATTY 1 cut(s) 50
ArsI GACNNNNNNTTYG 2 cut(s) 35, 67
AspS9I GGNCC 1 cut(s) 470
AsuHPI GGTGA 2 cut(s) 224, 469
AsuII TTCGAA 1 cut(s) 54
AvaII GGWCC 1 cut(s) 470
BbvI GCAGC 1 cut(s) 328
BccI CCATC 1 cut(s) 241
BceAI ACGGC 1 cut(s) 35
BcgI CGANNNNNNTGC 2 cut(s) 56, 90
BciT130I CCWGG 1 cut(s) 12
BfmI CTRYAG 1 cut(s) 300
BisI GCNGC 1 cut(s) 342
BlsI GCNGC 1 cut(s) 343
Bme1390I CCNGG 1 cut(s) 12
Bme18I GGWCC 1 cut(s) 470
BmgT120I GGNCC 1 cut(s) 470
BmiI GGNNCC 1 cut(s) 472
BmrFI CCNGG 1 cut(s) 12
BmsI GCATC 1 cut(s) 322
Bpu10I CCTNAGC 2 cut(s) 78, 337
Bpu14I TTCGAA 1 cut(s) 54
BpuEI CTTGAG 1 cut(s) 124
Bsc4I CCNNNNNNNGG 1 cut(s) 490
Bse118I RCCGGY 1 cut(s) 147
Bse1I ACTGG 2 cut(s) 325, 374
BseBI CCWGG 1 cut(s) 12
BseGI GGATG 1 cut(s) 313
BseLI CCNNNNNNNGG 1 cut(s) 490
BseNI ACTGG 2 cut(s) 325, 374
BseRI GAGGAG 2 cut(s) 219, 398
BseXI GCAGC 1 cut(s) 328
Bsh1285I CGRYCG 1 cut(s) 46
BsiEI CGRYCG 1 cut(s) 46
BsiSI CCGG 2 cut(s) 148, 200
BslFI GGGAC 1 cut(s) 456
BslI CCNNNNNNNGG 1 cut(s) 490
BsmFI GGGAC 1 cut(s) 456
Bsp119I TTCGAA 1 cut(s) 54
Bsp143I GATC 1 cut(s) 172
BspACI CCGC 2 cut(s) 46, 318
BspLI GGNNCC 1 cut(s) 472
BspT104I TTCGAA 1 cut(s) 54
BsrFI RCCGGY 1 cut(s) 147
BsrI ACTGG 2 cut(s) 325, 374
BssAI RCCGGY 1 cut(s) 147
BssMI GATC 1 cut(s) 172
Bst2UI CCWGG 1 cut(s) 12
Bst4CI ACNGT 2 cut(s) 94, 304
Bst6I CTCTTC 1 cut(s) 422
BstBI TTCGAA 1 cut(s) 54
BstC8I GCNNGC 2 cut(s) 8, 149
BstDEI CTNAG 3 cut(s) 78, 337, 358
BstF5I GGATG 1 cut(s) 313
BstKTI GATC 1 cut(s) 175
BstMBI GATC 1 cut(s) 172
BstMCI CGRYCG 1 cut(s) 46
BstMWI GCNNNNNNNGC 1 cut(s) 341
BstNI CCWGG 1 cut(s) 12
BstSCI CCNGG 1 cut(s) 10
BstSFI CTRYAG 1 cut(s) 300
BstV1I GCAGC 1 cut(s) 328
BtsCI GGATG 1 cut(s) 313
BtsIMutI CAGTG 1 cut(s) 381
Cac8I GCNNGC 2 cut(s) 8, 149
Cfr10I RCCGGY 1 cut(s) 147
Cfr13I GGNCC 1 cut(s) 470
Csp6I GTAC 1 cut(s) 108
CviJI RGCY 8 cut(s) 10, 41, 64, 147, 223, 271, 341, 373
CviKI_1 RGCY 8 cut(s) 10, 41, 64, 147, 223, 271, 341, 373
CviQI GTAC 1 cut(s) 108
DdeI CTNAG 3 cut(s) 78, 337, 358
DpnI GATC 1 cut(s) 174
DpnII GATC 1 cut(s) 172
Eam1104I CTCTTC 1 cut(s) 422
EarI CTCTTC 1 cut(s) 422
Eco47I GGWCC 1 cut(s) 470
Eco57I CTGAAG 1 cut(s) 486
EcoO109I RGGNCCY 1 cut(s) 470
EcoRII CCWGG 1 cut(s) 10
FaiI YATR 6 cut(s) 75, 169, 171, 263, 491, 497
FaqI GGGAC 1 cut(s) 456
FauI CCCGC 1 cut(s) 325
FauNDI CATATG 1 cut(s) 169
FblI GTMKAC 1 cut(s) 32
Fnu4HI GCNGC 1 cut(s) 342
FokI GGATG 1 cut(s) 300
Fsp4HI GCNGC 1 cut(s) 342
GluI GCNGC 1 cut(s) 342
HapII CCGG 2 cut(s) 148, 200
HincII GTYRAC 2 cut(s) 33, 297
HindII GTYRAC 2 cut(s) 33, 297
HpaII CCGG 2 cut(s) 148, 200
HphI GGTGA 2 cut(s) 224, 469
Hpy166II GTNNAC 4 cut(s) 17, 33, 215, 297
Hpy188I TCNGA 3 cut(s) 238, 331, 466
Hpy188III TCNNGA 1 cut(s) 477
Hpy8I GTNNAC 4 cut(s) 17, 33, 215, 297
HpyAV CCTTC 5 cut(s) 202, 274, 278, 331, 461
HpyCH4III ACNGT 2 cut(s) 94, 304
HpyF10VI GCNNNNNNNGC 1 cut(s) 341
HpyF3I CTNAG 3 cut(s) 78, 337, 358
KroI GCCGGC 1 cut(s) 147
KroNI GCCGGC 1 cut(s) 149
Kzo9I GATC 1 cut(s) 172
LpnPI CCDG 9 cut(s) 24, 125, 161, 209, 213, 338, 387, 408, 462
Lsp1109I GCAGC 1 cut(s) 328
LweI GCATC 1 cut(s) 322
MalI GATC 1 cut(s) 174
MboI GATC 1 cut(s) 172
MboII GAAGA 5 cut(s) 142, 145, 166, 439, 460
MluCI AATT 2 cut(s) 50, 250
MnlI CCTC 6 cut(s) 240, 357, 376, 379, 423, 484
MroNI GCCGGC 1 cut(s) 147
MseI TTAA 3 cut(s) 126, 242, 309
MspI CCGG 2 cut(s) 148, 200
MspR9I CCNGG 1 cut(s) 12
MvaI CCWGG 1 cut(s) 12
MwoI GCNNNNNNNGC 1 cut(s) 341
NaeI GCCGGC 1 cut(s) 149
NdeI CATATG 1 cut(s) 169
NdeII GATC 1 cut(s) 172
NgoMIV GCCGGC 1 cut(s) 147
NlaIV GGNNCC 1 cut(s) 472
NspV TTCGAA 1 cut(s) 54
PdiI GCCGGC 1 cut(s) 149
PflMI CCANNNNNTGG 1 cut(s) 490
PkrI GCNGC 1 cut(s) 343
PpuMI RGGWCCY 1 cut(s) 470
Psp5II RGGWCCY 1 cut(s) 470
Psp6I CCWGG 1 cut(s) 10
PspGI CCWGG 1 cut(s) 10
PspN4I GGNNCC 1 cut(s) 472
PspPI GGNCC 1 cut(s) 470
PspPPI RGGWCCY 1 cut(s) 470
RsaI GTAC 1 cut(s) 109
RsaNI GTAC 1 cut(s) 108
SalI GTCGAC 1 cut(s) 31
SaqAI TTAA 3 cut(s) 126, 242, 309
SatI GCNGC 1 cut(s) 342
Sau3AI GATC 1 cut(s) 172
Sau96I GGNCC 1 cut(s) 470
ScrFI CCNGG 1 cut(s) 12
SetI ASST 7 cut(s) 66, 84, 104, 273, 343, 439, 472
SfaNI GCATC 1 cut(s) 322
SfcI CTRYAG 1 cut(s) 300
SfuI TTCGAA 1 cut(s) 54
SinI GGWCC 1 cut(s) 470
SmlI CTYRAG 1 cut(s) 103
SmoI CTYRAG 1 cut(s) 103
Sse9I AATT 2 cut(s) 50, 250
SsiI CCGC 2 cut(s) 46, 318
SspI AATATT 1 cut(s) 276
StyD4I CCNGG 1 cut(s) 10
TaaI ACNGT 2 cut(s) 94, 304
TaqI TCGA 3 cut(s) 32, 54, 66
TasI AATT 2 cut(s) 50, 250
Tru1I TTAA 3 cut(s) 126, 242, 309
Tru9I TTAA 3 cut(s) 126, 242, 309
TscAI CASTG 1 cut(s) 381
TseI GCWGC 1 cut(s) 341
TspDTI ATGAA 1 cut(s) 338
TspGWI ACGGA 1 cut(s) 131
TspRI CASTG 1 cut(s) 381
Van91I CCANNNNNTGG 1 cut(s) 490
VpaK11BI GGWCC 1 cut(s) 470
XapI RAATTY 1 cut(s) 50
XmiI GTMKAC 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.