Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008208

Physical Location & Seq

Genomic Coordinates Reverse (-)

391421 .. 394184

Gene Structure 2764 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G01880.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGAAGATGCACGTATGTTTTAGTGTGATTTTGATGTTTCTAAGCATCTTCTTCATCAATGGTGCTTTGTCGAAGCTTGAAAGGTTGAAACATCCGGTGAAGAAGAAATCTGATGGCTCTCTGAGTTTTCTTGTTATCGGAGATTGGGGACGCAAAGGTGGTTTTAATCAATCTCTCGTTGCACATCAGATGGGAGTTGTGGGAGAGAAATTAGACATAGATTTTGTGATATCAGTAGGAGATAATTTCTACGACGACGGATTAAAAGGAGTCAATGATCCTTCCTTTGAAGCCTCTTTCTCTCATATCTACACTCATCCTAGTCTCCAAAAACAATGGTATTCAGTTTTGGGTAACCATGATTACAGAGGAAATGTTGAAGCACAACTAAGTAAAGTTCTCACCCAAAAAGATTGGAGATGGTTTTGTCGCAGATCTTTTGTCTTATCCTCAGGAATGGTGGATTTTTTCTTCGCGGACACAAATCCTTTTGTAGAAAAATACTTCACTGAACCAGAAGATCACACTTATGATTGGAGAAATGTCTTACCAAGAAATAAATACATCTCAAACCTCTTACATGATTTAGATTTAGAGATTAAAAAGTCGCGTGCCACATGGAAATTTGTCGTGGGACATCACGGGATCAAAACCGCAGGTAATCACGGTGTGACTCAAGAGCTTGTAGATCAACTTCTTCCAATTCTAGAGGAGAATAAAGTGGACTTGTACATAAATGGACATGATCACTGCTTGCAACACATTGGTTCTCACGGTAAAACCCAATTTCTTACAAGTGGAGGAGGATCAAAGGCATGGAGAGGACATGTTCAGCCATGGGATCCAAAAGAACTCAAACTGTATTACGATGGACAAGGTTTCATGTCTCTTCACATCACTCACTCCAAAGCTAAATTCATCTACTATGATGTTTCCGGCAATGTTCTTCACCGATCCTCATTGTCCAAAAGATCTGCTCATCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko04142 ko04380 ko05323 map00740 map01100 map04142 map04380 map05323

Pfam Domains

Protein Families

Metallophos

Protein Analysis

328

Amino Acids

37.55

Weight (kDa)

8.74

Isoelectric Point (pI)

34.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	42 - 251	1.9e-18	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01880
fragaria_vesca	FvH4_4g33012 FvH4_4g33012 FvH4_4g33012
malus_domestica	MD13G1016100.v1.1
prunus_persica	Prupe.1G337500_v2.0.a1 Prupe.1G337500_v2.0.a1 Prupe.1G337500_v2.0.a1
pyrus_communis	pycom13g01380
rosa_chinensis	RchiOBHm_Chr4g0442071
rosa_laevigata	RLG00000006043 RLG00000006044 RLG00000006047
rosa_multiflora	Rmu_sc0002501.1_g000007
rosa_roxburghii	Rroxscaffold_5G00382980
rosa_rugosa	Rorug04G0338600
rosa_samantha	Rh4AG390100 Rh4BG403500 Rh4BG403600 Rh4CG418600 Rh4CG418700 Rh4DG396700
rosa_wichuraiana	Rw4G033710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	647
AccII	CGCG	2 cut(s)	476, 610
AciI	CCGC	2 cut(s)	476, 654
AclWI	GGATC	6 cut(s)	272, 653, 814, 836, 849, 948
AcsI	RAATTY	2 cut(s)	623, 914
AdeI	CACNNNGTG	1 cut(s)	670
AfaI	GTAC	1 cut(s)	731
AflIII	ACRYGT	1 cut(s)	826
AgsI	TTSAA	4 cut(s)	80, 88, 290, 380
AjuI	GAANNNNNNNTTGG	2 cut(s)	899, 931
AluBI	AGCT	3 cut(s)	76, 682, 911
AluI	AGCT	3 cut(s)	76, 682, 911
Alw26I	GTCTC	2 cut(s)	329, 891
AlwI	GGATC	6 cut(s)	272, 653, 814, 836, 849, 948
ApoI	RAATTY	2 cut(s)	623, 914
ArsI	GACNNNNNNTTYG	2 cut(s)	206, 238
AsuHPI	GGTGA	3 cut(s)	109, 394, 941
AxyI	CCTNAGG	1 cut(s)	451
BamHI	GGATCC	1 cut(s)	841
BarI	GAAGNNNNNNTAC	2 cut(s)	678, 710
BccI	CCATC	4 cut(s)	107, 184, 414, 863
BclI	TGATCA	1 cut(s)	745
BcoDI	GTCTC	2 cut(s)	329, 891
BfaI	CTAG	2 cut(s)	321, 707
BfuAI	ACCTGC	1 cut(s)	647
BglII	AGATCT	2 cut(s)	434, 971
BmiI	GGNNCC	1 cut(s)	843
BmsI	GCATC	1 cut(s)	54
BpuEI	CTTGAG	1 cut(s)	660
BsaAI	YACGTR	1 cut(s)	13
BsaJI	CCNNGG	1 cut(s)	836
BsaWI	WCCGGW	1 cut(s)	94
Bse21I	CCTNAGG	1 cut(s)	451
Bse3DI	GCAATG	1 cut(s)	946
BseDI	CCNNGG	1 cut(s)	836
BseGI	GGATG	2 cut(s)	91, 316
BseMI	GCAATG	1 cut(s)	946
BseMII	CTCAG	2 cut(s)	113, 465
BseRI	GAGGAG	2 cut(s)	725, 816
Bsh1236I	CGCG	2 cut(s)	476, 610
BsiSI	CCGG	2 cut(s)	95, 936
BslFI	GGGAC	2 cut(s)	162, 648
BsmAI	GTCTC	2 cut(s)	329, 891
BsmFI	GGGAC	2 cut(s)	162, 648
Bsp1407I	TGTACA	1 cut(s)	729
Bsp19I	CCATGG	1 cut(s)	836
BspACI	CCGC	2 cut(s)	476, 654
BspCNI	CTCAG	2 cut(s)	114, 464
BspFNI	CGCG	2 cut(s)	476, 610
BspLI	GGNNCC	1 cut(s)	843
BspMI	ACCTGC	1 cut(s)	647
BspPI	GGATC	6 cut(s)	272, 653, 814, 836, 849, 948
BsrDI	GCAATG	1 cut(s)	946
BsrGI	TGTACA	1 cut(s)	729
BssECI	CCNNGG	1 cut(s)	836
BssT1I	CCWWGG	1 cut(s)	836
Bst4CI	ACNGT	3 cut(s)	668, 776, 861
Bst6I	CTCTTC	1 cut(s)	894
BstAUI	TGTACA	1 cut(s)	729
BstBAI	YACGTR	1 cut(s)	13
BstC8I	GCNNGC	2 cut(s)	612, 755
BstDEI	CTNAG	4 cut(s)	41, 122, 389, 451
BstDSI	CCRYGG	1 cut(s)	836
BstEII	GGTNACC	1 cut(s)	353
BstF5I	GGATG	2 cut(s)	91, 316
BstFNI	CGCG	2 cut(s)	476, 610
BstMAI	GTCTC	2 cut(s)	329, 891
BstNSI	RCATGY	1 cut(s)	830
BstPI	GGTNACC	1 cut(s)	353
BstUI	CGCG	2 cut(s)	476, 610
BstX2I	RGATCY	3 cut(s)	434, 841, 971
BstYI	RGATCY	3 cut(s)	434, 841, 971
Bsu36I	CCTNAGG	1 cut(s)	451
BtgI	CCRYGG	1 cut(s)	836
BtsCI	GGATG	2 cut(s)	91, 316
BtsI	GCAGTG	1 cut(s)	748
BtsIMutI	CAGTG	2 cut(s)	507, 748
BveI	ACCTGC	1 cut(s)	647
Cac8I	GCNNGC	2 cut(s)	612, 755
CseI	GACGC	1 cut(s)	159
Csp6I	GTAC	1 cut(s)	730
CviAII	CATG	8 cut(s)	359, 581, 618, 743, 816, 827, 837, 883
CviJI	RGCY	6 cut(s)	76, 117, 293, 682, 835, 911
CviKI_1	RGCY	6 cut(s)	76, 117, 293, 682, 835, 911
CviQI	GTAC	1 cut(s)	730
DdeI	CTNAG	4 cut(s)	41, 122, 389, 451
DraIII	CACNNNGTG	1 cut(s)	670
Eam1104I	CTCTTC	1 cut(s)	894
EarI	CTCTTC	1 cut(s)	894
Eco130I	CCWWGG	1 cut(s)	836
Eco32I	GATATC	1 cut(s)	231
Eco81I	CCTNAGG	1 cut(s)	451
Eco91I	GGTNACC	1 cut(s)	353
EcoO65I	GGTNACC	1 cut(s)	353
EcoRV	GATATC	1 cut(s)	231
EcoT14I	CCWWGG	1 cut(s)	836
ErhI	CCWWGG	1 cut(s)	836
FaeI	CATG	8 cut(s)	362, 584, 621, 746, 819, 830, 840, 886
FaqI	GGGAC	2 cut(s)	162, 648
FatI	CATG	8 cut(s)	358, 580, 617, 742, 815, 826, 836, 882
FbaI	TGATCA	1 cut(s)	745
FokI	GGATG	2 cut(s)	78, 303
FspBI	CTAG	2 cut(s)	321, 707
HapII	CCGG	2 cut(s)	95, 936
HgaI	GACGC	1 cut(s)	159
Hin1II	CATG	8 cut(s)	362, 584, 621, 746, 819, 830, 840, 886
HindIII	AAGCTT	1 cut(s)	74
HinfI	GANTC	2 cut(s)	270, 673
HpaII	CCGG	2 cut(s)	95, 936
HphI	GGTGA	3 cut(s)	109, 394, 941
Hpy166II	GTNNAC	1 cut(s)	724
Hpy188I	TCNGA	4 cut(s)	112, 123, 140, 189
Hpy188III	TCNNGA	3 cut(s)	453, 677, 707
Hpy8I	GTNNAC	1 cut(s)	724
Hpy99I	CGWCG	2 cut(s)	257, 260
HpyAV	CCTTC	1 cut(s)	291
HpyCH4III	ACNGT	3 cut(s)	668, 776, 861
HpyCH4IV	ACGT	1 cut(s)	12
HpyCH4V	TGCA	3 cut(s)	10, 182, 757
HpyF3I	CTNAG	4 cut(s)	41, 122, 389, 451
HpySE526I	ACGT	1 cut(s)	12
Hsp92II	CATG	8 cut(s)	362, 584, 621, 746, 819, 830, 840, 886
Ksp22I	TGATCA	1 cut(s)	745
LpnPI	CCDG	5 cut(s)	108, 438, 528, 642, 949
LweI	GCATC	1 cut(s)	54
MaeI	CTAG	2 cut(s)	321, 707
MaeII	ACGT	1 cut(s)	12
MaeIII	GTNAC	2 cut(s)	353, 670
MflI	RGATCY	3 cut(s)	434, 841, 971
MluCI	AATT	6 cut(s)	209, 244, 623, 702, 785, 914
MlyI	GAGTC	2 cut(s)	279, 667
MnlI	CCTC	9 cut(s)	304, 362, 460, 584, 703, 794, 797, 815, 967
MseI	TTAA	4 cut(s)	165, 263, 600, 985
MslI	CAYNNNNRTG	1 cut(s)	528
MspI	CCGG	2 cut(s)	95, 936
MvnI	CGCG	2 cut(s)	476, 610
NcoI	CCATGG	1 cut(s)	836
NlaIII	CATG	8 cut(s)	362, 584, 621, 746, 819, 830, 840, 886
NlaIV	GGNNCC	1 cut(s)	843
NmuCI	GTSAC	1 cut(s)	670
NspI	RCATGY	1 cut(s)	830
PciI	ACATGT	1 cut(s)	826
PleI	GAGTC	2 cut(s)	278, 667
PpsI	GAGTC	2 cut(s)	278, 667
Ppu21I	YACGTR	1 cut(s)	13
PscI	ACATGT	1 cut(s)	826
PspEI	GGTNACC	1 cut(s)	353
PspN4I	GGNNCC	1 cut(s)	843
PsuI	RGATCY	3 cut(s)	434, 841, 971
RsaI	GTAC	1 cut(s)	731
RsaNI	GTAC	1 cut(s)	730
RseI	CAYNNNNRTG	1 cut(s)	528
SaqAI	TTAA	4 cut(s)	165, 263, 600, 985
SchI	GAGTC	2 cut(s)	279, 667
SetI	ASST	9 cut(s)	15, 78, 86, 160, 576, 661, 684, 880, 913
SfaNI	GCATC	1 cut(s)	54
SmiMI	CAYNNNNRTG	1 cut(s)	528
SmlI	CTYRAG	1 cut(s)	675
SmoI	CTYRAG	1 cut(s)	675
Sse9I	AATT	6 cut(s)	209, 244, 623, 702, 785, 914
SsiI	CCGC	2 cut(s)	476, 654
SspMI	CTAG	2 cut(s)	321, 707
StyI	CCWWGG	1 cut(s)	836
TaaI	ACNGT	3 cut(s)	668, 776, 861
TaiI	ACGT	1 cut(s)	15
TaqI	TCGA	1 cut(s)	71
TasI	AATT	6 cut(s)	209, 244, 623, 702, 785, 914
TatI	WGTACW	1 cut(s)	729
Tru1I	TTAA	4 cut(s)	165, 263, 600, 985
Tru9I	TTAA	4 cut(s)	165, 263, 600, 985
TscAI	CASTG	2 cut(s)	514, 755
TseFI	GTSAC	1 cut(s)	670
Tsp45I	GTSAC	1 cut(s)	670
TspDTI	ATGAA	4 cut(s)	17, 43, 871, 907
TspGWI	ACGGA	1 cut(s)	273
TspRI	CASTG	2 cut(s)	514, 755
XapI	RAATTY	2 cut(s)	623, 914
XbaI	TCTAGA	1 cut(s)	706
XceI	RCATGY	1 cut(s)	830
XspI	CTAG	2 cut(s)	321, 707

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.