Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0008208

Physical Location & Seq

Genomic Coordinates Forward (+)

61335946 .. 61336903

Gene Structure 958 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG396700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGGGAATAATTGGAGAGAAAGCACAGACAAACTTCGTCATCTCCACCGGCGACAATTTCTACGATGATGGCTTGACAGGGCCGGATGATCCAGCCTTCAATGAGTCATTTTCCAACATATACACTGCCCCAAGCTTACATATACCTTGGTACATTGTGTTGGGCAACCATGACTATAGGGGTGATGCTTTAGCACAACTAAAAATTGACCGTAGATGGTTTTGCTCCAGGCCATTGTTCATTATATATTCAGCAATCGCAGAGTTTTTCTTCGTGGACACAACCCCATTTGTGGATGACTACTTTACAAATCCAAAGGAGCATGTCTATGACTGGAGAGGTGTGCTTCCTCGAGAGGATTACCTTCCAAAACTCCTGAAGGATCTGGATGTAACACTGAAAAATTCCCGTGCAAAATGGAAAATTGTGATCGGTCACCATACAATTAGAAGTGCAGGACATCATGGTAACACCACTGATCTTGTAACCCACCTTCTCCCAGTCCTTAAGGTAATCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko04142 ko04380 ko05323 map00740 map01100 map04142 map04380 map05323

Pfam Domains

Protein Families

Metallophos

Protein Analysis

173

Amino Acids

19.81

Weight (kDa)

6.02

Isoelectric Point (pI)

21.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	6 - 160	2.9e-12	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0008208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01880
fragaria_vesca	FvH4_4g33012 FvH4_4g33012 FvH4_4g33012
malus_domestica	MD13G1016100.v1.1
prunus_persica	Prupe.1G337500_v2.0.a1 Prupe.1G337500_v2.0.a1 Prupe.1G337500_v2.0.a1
pyrus_communis	pycom13g01380
rosa_chinensis	RchiOBHm_Chr4g0442071
rosa_laevigata	RLG00000006043 RLG00000006044 RLG00000006047
rosa_multiflora	Rmu_sc0002501.1_g000007
rosa_roxburghii	Rroxscaffold_5G00382980
rosa_rugosa	Rorug04G0338600
rosa_samantha	Rh4AG390100 Rh4BG403500 Rh4BG403600 Rh4CG418600 Rh4CG418700 Rh4DG396700
rosa_wichuraiana	Rw4G033710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	83, 390
AcsI	RAATTY	1 cut(s)	403
AcuI	CTGAAG	1 cut(s)	398
AfaI	GTAC	1 cut(s)	152
AfiI	CCNNNNNNNGG	1 cut(s)	292
AflII	CTTAAG	1 cut(s)	506
AgsI	TTSAA	1 cut(s)	100
AjnI	CCWGG	1 cut(s)	227
AluBI	AGCT	1 cut(s)	135
AluI	AGCT	1 cut(s)	135
AlwI	GGATC	2 cut(s)	83, 390
Ama87I	CYCGRG	1 cut(s)	351
AoxI	GGCC	2 cut(s)	80, 230
ApoI	RAATTY	1 cut(s)	403
AspS9I	GGNCC	1 cut(s)	80
AsuHPI	GGTGA	2 cut(s)	194, 428
AvaI	CYCGRG	1 cut(s)	351
BarI	GAAGNNNNNNTAC	2 cut(s)	477, 509
BccI	CCATC	2 cut(s)	62, 210
BciT130I	CCWGG	1 cut(s)	229
BfmI	CTRYAG	1 cut(s)	175
BfrI	CTTAAG	1 cut(s)	506
Bme1390I	CCNGG	1 cut(s)	229
BmeT110I	CYCGRG	1 cut(s)	351
BmgT120I	GGNCC	1 cut(s)	80
BmrFI	CCNGG	1 cut(s)	229
BmrI	ACTGGG	1 cut(s)	494
BmsI	GCATC	1 cut(s)	175
BmuI	ACTGGG	1 cut(s)	494
BpmI	CTGGAG	2 cut(s)	211, 355
BsaJI	CCNNGG	1 cut(s)	146
Bsc4I	CCNNNNNNNGG	1 cut(s)	292
Bse118I	RCCGGY	1 cut(s)	47
Bse1I	ACTGG	2 cut(s)	338, 500
BseBI	CCWGG	1 cut(s)	229
BseDI	CCNNGG	1 cut(s)	146
BseGI	GGATG	3 cut(s)	91, 301, 394
BseLI	CCNNNNNNNGG	1 cut(s)	292
BseNI	ACTGG	2 cut(s)	338, 500
BsgI	GTGCAG	1 cut(s)	474
BshFI	GGCC	2 cut(s)	82, 232
BsiHKCI	CYCGRG	1 cut(s)	351
BsiSI	CCGG	2 cut(s)	48, 83
BslI	CCNNNNNNNGG	1 cut(s)	292
BsnI	GGCC	2 cut(s)	82, 232
BsoBI	CYCGRG	1 cut(s)	351
Bsp143I	GATC	4 cut(s)	88, 382, 429, 478
BspANI	GGCC	2 cut(s)	82, 232
BspPI	GGATC	2 cut(s)	83, 390
BspTI	CTTAAG	1 cut(s)	506
BsrFI	RCCGGY	1 cut(s)	47
BsrI	ACTGG	2 cut(s)	338, 500
BssAI	RCCGGY	1 cut(s)	47
BssECI	CCNNGG	1 cut(s)	146
BssMI	GATC	4 cut(s)	88, 382, 429, 478
BssT1I	CCWWGG	1 cut(s)	146
Bst2UI	CCWGG	1 cut(s)	229
Bst4CI	ACNGT	1 cut(s)	212
BstAFI	CTTAAG	1 cut(s)	506
BstEII	GGTNACC	1 cut(s)	434
BstF5I	GGATG	3 cut(s)	91, 301, 394
BstKTI	GATC	4 cut(s)	91, 385, 432, 481
BstMBI	GATC	4 cut(s)	88, 382, 429, 478
BstNI	CCWGG	1 cut(s)	229
BstNSI	RCATGY	1 cut(s)	326
BstPI	GGTNACC	1 cut(s)	434
BstSCI	CCNGG	1 cut(s)	227
BstSFI	CTRYAG	1 cut(s)	175
BstX2I	RGATCY	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	382
BsuRI	GGCC	2 cut(s)	82, 232
BtsCI	GGATG	3 cut(s)	91, 301, 394
BtsI	GCAGTG	1 cut(s)	123
BtsIMutI	CAGTG	3 cut(s)	123, 395, 474
Cfr10I	RCCGGY	1 cut(s)	47
Cfr13I	GGNCC	1 cut(s)	80
Csp6I	GTAC	1 cut(s)	151
CspCI	CAANNNNNGTGG	2 cut(s)	463, 498
CviAII	CATG	3 cut(s)	170, 323, 464
CviJI	RGCY	5 cut(s)	72, 82, 95, 135, 232
CviKI_1	RGCY	5 cut(s)	72, 82, 95, 135, 232
CviQI	GTAC	1 cut(s)	151
DpnI	GATC	4 cut(s)	90, 384, 431, 480
DpnII	GATC	4 cut(s)	88, 382, 429, 478
Eco130I	CCWWGG	1 cut(s)	146
Eco57I	CTGAAG	1 cut(s)	398
Eco88I	CYCGRG	1 cut(s)	351
Eco91I	GGTNACC	1 cut(s)	434
EcoO65I	GGTNACC	1 cut(s)	434
EcoRII	CCWGG	1 cut(s)	227
EcoT14I	CCWWGG	1 cut(s)	146
ErhI	CCWWGG	1 cut(s)	146
FaeI	CATG	3 cut(s)	173, 326, 467
FatI	CATG	3 cut(s)	169, 322, 463
FokI	GGATG	3 cut(s)	98, 308, 401
GsuI	CTGGAG	2 cut(s)	211, 355
HaeIII	GGCC	2 cut(s)	82, 232
HapII	CCGG	2 cut(s)	48, 83
Hin1II	CATG	3 cut(s)	173, 326, 467
HindIII	AAGCTT	1 cut(s)	133
HinfI	GANTC	1 cut(s)	104
HpaII	CCGG	2 cut(s)	48, 83
HphI	GGTGA	2 cut(s)	194, 428
Hpy166II	GTNNAC	1 cut(s)	277
Hpy188III	TCNNGA	3 cut(s)	353, 376, 386
Hpy8I	GTNNAC	1 cut(s)	277
HpyAV	CCTTC	4 cut(s)	106, 373, 374, 503
HpyCH4III	ACNGT	1 cut(s)	212
HpyCH4V	TGCA	2 cut(s)	413, 455
Hsp92II	CATG	3 cut(s)	173, 326, 467
Kzo9I	GATC	4 cut(s)	88, 382, 429, 478
LmnI	GCTCC	2 cut(s)	230, 319
LweI	GCATC	1 cut(s)	175
MaeIII	GTNAC	4 cut(s)	391, 434, 467, 484
MalI	GATC	4 cut(s)	90, 384, 431, 480
MboI	GATC	4 cut(s)	88, 382, 429, 478
MboII	GAAGA	1 cut(s)	262
MflI	RGATCY	1 cut(s)	382
MluCI	AATT	6 cut(s)	9, 55, 204, 403, 423, 444
MlyI	GAGTC	1 cut(s)	113
MmeI	TCCRAC	1 cut(s)	138
MnlI	CCTC	3 cut(s)	332, 349, 360
MseI	TTAA	2 cut(s)	507, 520
MslI	CAYNNNNRTG	1 cut(s)	327
MspCI	CTTAAG	1 cut(s)	506
MspI	CCGG	2 cut(s)	48, 83
MspR9I	CCNGG	1 cut(s)	229
MvaI	CCWGG	1 cut(s)	229
NdeII	GATC	4 cut(s)	88, 382, 429, 478
NlaIII	CATG	3 cut(s)	173, 326, 467
NmuCI	GTSAC	1 cut(s)	434
NspI	RCATGY	1 cut(s)	326
PaeR7I	CTCGAG	1 cut(s)	351
PleI	GAGTC	1 cut(s)	112
PpsI	GAGTC	1 cut(s)	112
Psp6I	CCWGG	1 cut(s)	227
PspEI	GGTNACC	1 cut(s)	434
PspGI	CCWGG	1 cut(s)	227
PspPI	GGNCC	1 cut(s)	80
PsuI	RGATCY	1 cut(s)	382
RsaI	GTAC	1 cut(s)	152
RsaNI	GTAC	1 cut(s)	151
RseI	CAYNNNNRTG	1 cut(s)	327
SaqAI	TTAA	2 cut(s)	507, 520
Sau3AI	GATC	4 cut(s)	88, 382, 429, 478
Sau96I	GGNCC	1 cut(s)	80
SchI	GAGTC	1 cut(s)	113
ScrFI	CCNGG	1 cut(s)	229
SetI	ASST	6 cut(s)	137, 148, 343, 366, 495, 513
SfaNI	GCATC	1 cut(s)	175
SfcI	CTRYAG	1 cut(s)	175
Sfr274I	CTCGAG	1 cut(s)	351
SgrAI	CRCCGGYG	1 cut(s)	47
SlaI	CTCGAG	1 cut(s)	351
SmiMI	CAYNNNNRTG	1 cut(s)	327
SmlI	CTYRAG	2 cut(s)	351, 506
SmoI	CTYRAG	2 cut(s)	351, 506
Sse9I	AATT	6 cut(s)	9, 55, 204, 403, 423, 444
StyD4I	CCNGG	1 cut(s)	227
StyI	CCWWGG	1 cut(s)	146
TaaI	ACNGT	1 cut(s)	212
TaqI	TCGA	1 cut(s)	352
TaqII	GACCGA	1 cut(s)	422
TasI	AATT	6 cut(s)	9, 55, 204, 403, 423, 444
Tru1I	TTAA	2 cut(s)	507, 520
Tru9I	TTAA	2 cut(s)	507, 520
TscAI	CASTG	3 cut(s)	130, 402, 481
TseFI	GTSAC	1 cut(s)	434
Tsp45I	GTSAC	1 cut(s)	434
TspDTI	ATGAA	1 cut(s)	229
TspRI	CASTG	3 cut(s)	130, 402, 481
Vha464I	CTTAAG	1 cut(s)	506
XapI	RAATTY	1 cut(s)	403
XceI	RCATGY	1 cut(s)	326
XhoI	CTCGAG	1 cut(s)	351

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.