Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0008208

Physical Location & Seq

Genomic Coordinates Reverse (-)

3821220 .. 3822856

Gene Structure 1637 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006043

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1065 bp

ATGGCTTCTTTGTACTCTTCTAATTCCAACAAAACCATGCAGCGTTTCTCATTTCCTCAGTTCTTGATCCTCGCGGCTTGCCTCTCACTTTTTTTGGTTGCTAAAGCTGATCTTCAACGTTTTCAACAGCAAGCAAATGCAGACGGGTCTCTGAGTTTCTTGGTCGTCGGAGATTGGGGAAGACGAGGACTCTACAACCAATCTAAAGTCGCTACCCAGATGGGAATAATTGGAGAGAACGCACAGACAAACTTCGTCATCTCCACCGGCGACAATTTCTACGATGATGGCTTGACAGGGCCGGATGATCCAGCCTTCAATGAGTCATTTTCCAACATATACACTGCCCCACGCTTACAGATACCTTGGTACATTGTGTTGGGCAACCATGACTATAGGGGTGATGCTTTAGCACAACTAAAAATTGACCGTAGATGGTTTTGCTCCAGGCCATTGTTCATTATATATTCAGCAACCGCAGAGTTTTTCTTCGTCGACACAACCCCATTTGTGGATGACTACTTTACAAATCCAAAGGAGCATGTCTATGACTGGAGAGGCGTGCTTCCTCGAGAGGATTACCTTTCAAAACTCCTGAAGGATCTGGATGTAACACTGAAAAATTCCCGTGCAAAATGGAAAATTGTGGTCGGTCACCATACAATTAGAAGTGCAGGACATCATGGTAACACCAGTGATCTTGTAACCCACCTTCTCCCAGTCCTTAAGGCAAACAAAATAGATTTTTATATAAACGGACATGACCATTGCTTGCAGCACATCAGTGATCCTGACAGTAAAATTGAGTTTTTTACCAGTGGAGGTGGCTCCAAGGCATGGAGAGGTGATATAAAGTGGTGGGATCCAAAAGAATTGAAGCTGTACTACGACGGCCAAGGTTTTATGTCAGTACAAATGACTAAAACCCGTGTTGATATACAATTCTATGATGTCTTTGGCAATGTTTTGCACAAATGGAGAAAATCCAAAGAGGTCAACTCAGTCACGCATAGGTTACCAATGCTTAGAAGAAAAGCTCTGATGTATGAAGGAAGAGTTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko04142 ko04380 ko05323 map00740 map01100 map04142 map04380 map05323

Pfam Domains

Protein Families

Metallophos

Protein Analysis

355

Amino Acids

40.69

Weight (kDa)

8.89

Isoelectric Point (pI)

32.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	52 - 257	1e-18	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01880
fragaria_vesca	FvH4_4g33012 FvH4_4g33012 FvH4_4g33012
malus_domestica	MD13G1016100.v1.1
prunus_persica	Prupe.1G337500_v2.0.a1 Prupe.1G337500_v2.0.a1 Prupe.1G337500_v2.0.a1
pyrus_communis	pycom13g01380
rosa_chinensis	RchiOBHm_Chr4g0442071
rosa_laevigata	RLG00000006043 RLG00000006044 RLG00000006047
rosa_multiflora	Rmu_sc0002501.1_g000007
rosa_roxburghii	Rroxscaffold_5G00382980
rosa_rugosa	Rorug04G0338600
rosa_samantha	Rh4AG390100 Rh4BG403500 Rh4BG403600 Rh4CG418600 Rh4CG418700 Rh4DG396700
rosa_wichuraiana	Rw4G033710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	837
AccI	GTMKAC	1 cut(s)	495
AccII	CGCG	1 cut(s)	74
AciI	CCGC	2 cut(s)	74, 477
AclI	AACGTT	1 cut(s)	118
AclWI	GGATC	6 cut(s)	61, 302, 609, 782, 857, 870
AcoI	YGGCCR	1 cut(s)	892
AcsI	RAATTY	1 cut(s)	622
AcuI	CTGAAG	1 cut(s)	617
AfaI	GTAC	4 cut(s)	14, 371, 884, 912
AfiI	CCNNNNNNNGG	2 cut(s)	511, 837
AflII	CTTAAG	1 cut(s)	725
AgsI	TTSAA	5 cut(s)	116, 125, 319, 588, 877
AjnI	CCWGG	1 cut(s)	446
AleI	CACNNNNGTG	1 cut(s)	783
AluBI	AGCT	3 cut(s)	107, 880, 1037
AluI	AGCT	3 cut(s)	107, 880, 1037
Alw26I	GTCTC	1 cut(s)	153
AlwI	GGATC	6 cut(s)	61, 302, 609, 782, 857, 870
Ama87I	CYCGRG	1 cut(s)	570
AoxI	GGCC	3 cut(s)	299, 449, 892
ApeKI	GCWGC	2 cut(s)	40, 775
ApoI	RAATTY	1 cut(s)	622
AspS9I	GGNCC	1 cut(s)	299
AsuHPI	GGTGA	3 cut(s)	413, 647, 857
AvaI	CYCGRG	1 cut(s)	570
BaeI	ACNNNNGTAYC	2 cut(s)	353, 386
BamHI	GGATCC	1 cut(s)	862
BarI	GAAGNNNNNNTAC	4 cut(s)	696, 728, 869, 901
BbsI	GAAGAC	1 cut(s)	187
BbvI	GCAGC	2 cut(s)	52, 787
BccI	CCATC	3 cut(s)	214, 281, 429
BceAI	ACGGC	1 cut(s)	907
BciT130I	CCWGG	1 cut(s)	448
BcoDI	GTCTC	1 cut(s)	153
BfmI	CTRYAG	1 cut(s)	394
BfrI	CTTAAG	1 cut(s)	725
BisI	GCNGC	3 cut(s)	41, 75, 776
BlsI	GCNGC	3 cut(s)	42, 76, 777
Bme1390I	CCNGG	1 cut(s)	448
BmeT110I	CYCGRG	1 cut(s)	570
BmgT120I	GGNCC	1 cut(s)	299
BmiI	GGNNCC	2 cut(s)	829, 864
BmrFI	CCNGG	1 cut(s)	448
BmrI	ACTGGG	1 cut(s)	713
BmsI	GCATC	1 cut(s)	394
BmuI	ACTGGG	1 cut(s)	713
BpiI	GAAGAC	1 cut(s)	187
BplI	GAGNNNNNCTC	2 cut(s)	983, 1015
BpmI	CTGGAG	2 cut(s)	430, 574
BsaI	GGTCTC	1 cut(s)	153
BsaJI	CCNNGG	3 cut(s)	365, 831, 895
Bsc4I	CCNNNNNNNGG	2 cut(s)	511, 837
Bse118I	RCCGGY	1 cut(s)	266
Bse1I	ACTGG	4 cut(s)	557, 693, 719, 816
Bse3DI	GCAATG	2 cut(s)	766, 967
BseBI	CCWGG	1 cut(s)	448
BseDI	CCNNGG	3 cut(s)	365, 831, 895
BseGI	GGATG	3 cut(s)	310, 520, 613
BseLI	CCNNNNNNNGG	2 cut(s)	511, 837
BseMI	GCAATG	2 cut(s)	766, 967
BseMII	CTCAG	3 cut(s)	71, 143, 1014
BseNI	ACTGG	4 cut(s)	557, 693, 719, 816
BseXI	GCAGC	2 cut(s)	52, 787
BsgI	GTGCAG	1 cut(s)	693
Bsh1236I	CGCG	1 cut(s)	74
BshFI	GGCC	3 cut(s)	301, 451, 894
BsiHKCI	CYCGRG	1 cut(s)	570
BsiSI	CCGG	2 cut(s)	267, 302
BslI	CCNNNNNNNGG	2 cut(s)	511, 837
BsmAI	GTCTC	1 cut(s)	153
BsnI	GGCC	3 cut(s)	301, 451, 894
Bso31I	GGTCTC	1 cut(s)	153
BsoBI	CYCGRG	1 cut(s)	570
Bsp143I	GATC	7 cut(s)	66, 109, 307, 601, 697, 787, 862
BspACI	CCGC	2 cut(s)	74, 477
BspANI	GGCC	3 cut(s)	301, 451, 894
BspCNI	CTCAG	3 cut(s)	70, 144, 1013
BspFNI	CGCG	1 cut(s)	74
BspLI	GGNNCC	2 cut(s)	829, 864
BspPI	GGATC	6 cut(s)	61, 302, 609, 782, 857, 870
BspTI	CTTAAG	1 cut(s)	725
BspTNI	GGTCTC	1 cut(s)	153
BsrDI	GCAATG	2 cut(s)	766, 967
BsrFI	RCCGGY	1 cut(s)	266
BsrI	ACTGG	4 cut(s)	557, 693, 719, 816
BssAI	RCCGGY	1 cut(s)	266
BssECI	CCNNGG	3 cut(s)	365, 831, 895
BssMI	GATC	7 cut(s)	66, 109, 307, 601, 697, 787, 862
BssT1I	CCWWGG	3 cut(s)	365, 831, 895
Bst2UI	CCWGG	1 cut(s)	448
Bst4CI	ACNGT	2 cut(s)	431, 797
Bst6I	CTCTTC	2 cut(s)	22, 1048
BstAFI	CTTAAG	1 cut(s)	725
BstC8I	GCNNGC	4 cut(s)	79, 132, 563, 773
BstDEI	CTNAG	4 cut(s)	57, 152, 1000, 1025
BstEII	GGTNACC	2 cut(s)	653, 1014
BstF5I	GGATG	3 cut(s)	310, 520, 613
BstFNI	CGCG	1 cut(s)	74
BstKTI	GATC	7 cut(s)	69, 112, 310, 604, 700, 790, 865
BstMAI	GTCTC	1 cut(s)	153
BstMBI	GATC	7 cut(s)	66, 109, 307, 601, 697, 787, 862
BstNI	CCWGG	1 cut(s)	448
BstNSI	RCATGY	1 cut(s)	545
BstPI	GGTNACC	2 cut(s)	653, 1014
BstSCI	CCNGG	1 cut(s)	446
BstSFI	CTRYAG	1 cut(s)	394
BstUI	CGCG	1 cut(s)	74
BstV1I	GCAGC	2 cut(s)	52, 787
BstV2I	GAAGAC	1 cut(s)	187
BstX2I	RGATCY	2 cut(s)	601, 862
BstYI	RGATCY	2 cut(s)	601, 862
BsuRI	GGCC	3 cut(s)	301, 451, 894
BtsCI	GGATG	3 cut(s)	310, 520, 613
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	5 cut(s)	342, 614, 700, 790, 823
Cac8I	GCNNGC	4 cut(s)	79, 132, 563, 773
Cfr10I	RCCGGY	1 cut(s)	266
Cfr13I	GGNCC	1 cut(s)	299
Csp6I	GTAC	4 cut(s)	13, 370, 883, 911
CviAII	CATG	6 cut(s)	37, 389, 542, 683, 761, 837
CviQI	GTAC	4 cut(s)	13, 370, 883, 911
DdeI	CTNAG	4 cut(s)	57, 152, 1000, 1025
DpnI	GATC	7 cut(s)	68, 111, 309, 603, 699, 789, 864
DpnII	GATC	7 cut(s)	66, 109, 307, 601, 697, 787, 862
EaeI	YGGCCR	1 cut(s)	892
Eam1104I	CTCTTC	2 cut(s)	22, 1048
EarI	CTCTTC	2 cut(s)	22, 1048
Eco130I	CCWWGG	3 cut(s)	365, 831, 895
Eco31I	GGTCTC	1 cut(s)	153
Eco57I	CTGAAG	1 cut(s)	617
Eco88I	CYCGRG	1 cut(s)	570
Eco91I	GGTNACC	2 cut(s)	653, 1014
EcoO65I	GGTNACC	2 cut(s)	653, 1014
EcoRII	CCWGG	1 cut(s)	446
EcoT14I	CCWWGG	3 cut(s)	365, 831, 895
ErhI	CCWWGG	3 cut(s)	365, 831, 895
FaeI	CATG	6 cut(s)	40, 392, 545, 686, 764, 840
FalI	AAGNNNNNCTT	2 cut(s)	96, 128
FatI	CATG	6 cut(s)	36, 388, 541, 682, 760, 836
FblI	GTMKAC	1 cut(s)	495
Fnu4HI	GCNGC	3 cut(s)	41, 75, 776
FokI	GGATG	3 cut(s)	317, 527, 620
Fsp4HI	GCNGC	3 cut(s)	41, 75, 776
GluI	GCNGC	3 cut(s)	41, 75, 776
GsuI	CTGGAG	2 cut(s)	430, 574
HaeIII	GGCC	3 cut(s)	301, 451, 894
HapII	CCGG	2 cut(s)	267, 302
Hin1II	CATG	6 cut(s)	40, 392, 545, 686, 764, 840
HincII	GTYRAC	2 cut(s)	496, 997
HindII	GTYRAC	2 cut(s)	496, 997
HinfI	GANTC	2 cut(s)	189, 323
HpaII	CCGG	2 cut(s)	267, 302
HphI	GGTGA	3 cut(s)	413, 647, 857
Hpy166II	GTNNAC	2 cut(s)	496, 997
Hpy188I	TCNGA	3 cut(s)	153, 170, 1041
Hpy188III	TCNNGA	5 cut(s)	64, 572, 595, 605, 791
Hpy8I	GTNNAC	2 cut(s)	496, 997
Hpy99I	CGWCG	3 cut(s)	170, 497, 893
HpyAV	CCTTC	4 cut(s)	325, 592, 722, 1043
HpyCH4III	ACNGT	2 cut(s)	431, 797
HpyCH4IV	ACGT	1 cut(s)	118
HpyCH4V	TGCA	6 cut(s)	40, 140, 632, 674, 775, 970
HpyF3I	CTNAG	4 cut(s)	57, 152, 1000, 1025
HpySE526I	ACGT	1 cut(s)	118
Hsp92II	CATG	6 cut(s)	40, 392, 545, 686, 764, 840
Kzo9I	GATC	7 cut(s)	66, 109, 307, 601, 697, 787, 862
LmnI	GCTCC	3 cut(s)	449, 538, 833
Lsp1109I	GCAGC	2 cut(s)	52, 787
LweI	GCATC	1 cut(s)	394
MaeII	ACGT	1 cut(s)	118
MaeIII	GTNAC	6 cut(s)	610, 653, 686, 703, 1003, 1014
MalI	GATC	7 cut(s)	68, 111, 309, 603, 699, 789, 864
MboI	GATC	7 cut(s)	66, 109, 307, 601, 697, 787, 862
MboII	GAAGA	6 cut(s)	9, 104, 192, 481, 1041, 1065
MflI	RGATCY	2 cut(s)	601, 862
MlyI	GAGTC	2 cut(s)	183, 332
MmeI	TCCRAC	3 cut(s)	51, 148, 357
MseI	TTAA	1 cut(s)	726
MslI	CAYNNNNRTG	2 cut(s)	546, 783
MspCI	CTTAAG	1 cut(s)	725
MspI	CCGG	2 cut(s)	267, 302
MspR9I	CCNGG	1 cut(s)	448
MvaI	CCWGG	1 cut(s)	448
MvnI	CGCG	1 cut(s)	74
NdeII	GATC	7 cut(s)	66, 109, 307, 601, 697, 787, 862
NlaIII	CATG	6 cut(s)	40, 392, 545, 686, 764, 840
NlaIV	GGNNCC	2 cut(s)	829, 864
NmuCI	GTSAC	2 cut(s)	653, 1003
NspI	RCATGY	1 cut(s)	545
OliI	CACNNNNGTG	1 cut(s)	783
PaeR7I	CTCGAG	1 cut(s)	570
PflMI	CCANNNNNTGG	1 cut(s)	837
PkrI	GCNGC	3 cut(s)	42, 76, 777
PleI	GAGTC	2 cut(s)	183, 331
PpsI	GAGTC	2 cut(s)	183, 331
Psp1406I	AACGTT	1 cut(s)	118
Psp6I	CCWGG	1 cut(s)	446
PspEI	GGTNACC	2 cut(s)	653, 1014
PspGI	CCWGG	1 cut(s)	446
PspN4I	GGNNCC	2 cut(s)	829, 864
PspPI	GGNCC	1 cut(s)	299
PsuI	RGATCY	2 cut(s)	601, 862
RsaI	GTAC	4 cut(s)	14, 371, 884, 912
RsaNI	GTAC	4 cut(s)	13, 370, 883, 911
RseI	CAYNNNNRTG	2 cut(s)	546, 783
SalI	GTCGAC	1 cut(s)	494
SaqAI	TTAA	1 cut(s)	726
SatI	GCNGC	3 cut(s)	41, 75, 776
Sau3AI	GATC	7 cut(s)	66, 109, 307, 601, 697, 787, 862
Sau96I	GGNCC	1 cut(s)	299
SchI	GAGTC	2 cut(s)	183, 332
ScrFI	CCNGG	1 cut(s)	448
SfaNI	GCATC	1 cut(s)	394
SfcI	CTRYAG	1 cut(s)	394
Sfr274I	CTCGAG	1 cut(s)	570
SgrAI	CRCCGGYG	1 cut(s)	266
SlaI	CTCGAG	1 cut(s)	570
SmiMI	CAYNNNNRTG	2 cut(s)	546, 783
SmlI	CTYRAG	2 cut(s)	570, 725
SmoI	CTYRAG	2 cut(s)	570, 725
SsiI	CCGC	2 cut(s)	74, 477
StyD4I	CCNGG	1 cut(s)	446
StyI	CCWWGG	3 cut(s)	365, 831, 895
TaaI	ACNGT	2 cut(s)	431, 797
TaiI	ACGT	1 cut(s)	121
TaqI	TCGA	2 cut(s)	495, 571
TaqII	GACCGA	1 cut(s)	641
TatI	WGTACW	3 cut(s)	12, 882, 910
TauI	GCSGC	1 cut(s)	77
Tru1I	TTAA	1 cut(s)	726
Tru9I	TTAA	1 cut(s)	726
TscAI	CASTG	5 cut(s)	349, 621, 700, 790, 823
TseFI	GTSAC	2 cut(s)	653, 1003
TseI	GCWGC	2 cut(s)	40, 775
Tsp45I	GTSAC	2 cut(s)	653, 1003
TspDTI	ATGAA	2 cut(s)	448, 1062
TspGWI	ACGGA	1 cut(s)	771
TspRI	CASTG	5 cut(s)	349, 621, 700, 790, 823
Van91I	CCANNNNNTGG	1 cut(s)	837
Vha464I	CTTAAG	1 cut(s)	725
XapI	RAATTY	1 cut(s)	622
XceI	RCATGY	1 cut(s)	545
XhoI	CTCGAG	1 cut(s)	570
XmiI	GTMKAC	1 cut(s)	495

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.