Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002501.1

Orthogroup ID

OG0008208

Physical Location & Seq

Genomic Coordinates Reverse (-)

32488 .. 34055

Gene Structure 1568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002501.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

atgcagcgtttctcatttcctcaattcttgatcctcacggcttgcctctcactttgtttggttgctaaagctgatcttcaaccttttcaacagcaagcaaatgccgatgggtctctgagtttcttggtcgttggagattggggaaggcgaggactctacaaccaatctaaagtcgctacccagatgggaataattggagagaaagcacagacaaacttcgtcatctccaccggcgacaatttctacgatgatggcttgacagggccggatgatccagccttcaatgagtcattttccaacatatacactgccccaagcttacagataccttgtaaaattgagttttttaccagtggaggtggctccaaggcatggagaggtgatatcaagtggtgggatccaagagaattgaagctgtactatgacggccaaggttttatgtcggtacaaatgactaaaacccgtgctgacttacaattctatgatgtctttggcaatgttttgcacaaatggagcaaaaccaaagagctcaactcagtcaggcataggaaagctctaattgtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko04142 ko04380 ko05323 map00740 map01100 map04142 map04380 map05323

Pfam Domains

Protein Families

Metallophos

Protein Analysis

188

Amino Acids

21.21

Weight (kDa)

8.4

Isoelectric Point (pI)

40.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01880
fragaria_vesca	FvH4_4g33012 FvH4_4g33012 FvH4_4g33012
malus_domestica	MD13G1016100.v1.1
prunus_persica	Prupe.1G337500_v2.0.a1 Prupe.1G337500_v2.0.a1 Prupe.1G337500_v2.0.a1
pyrus_communis	pycom13g01380
rosa_chinensis	RchiOBHm_Chr4g0442071
rosa_laevigata	RLG00000006043 RLG00000006044 RLG00000006047
rosa_multiflora	Rmu_sc0002501.1_g000007
rosa_roxburghii	Rroxscaffold_5G00382980
rosa_rugosa	Rorug04G0338600
rosa_samantha	Rh4AG390100 Rh4BG403500 Rh4BG403600 Rh4CG418600 Rh4CG418700 Rh4DG396700
rosa_wichuraiana	Rw4G033710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	372
AclWI	GGATC	4 cut(s)	25, 266, 392, 405
AcoI	YGGCCR	1 cut(s)	427
AfaI	GTAC	2 cut(s)	419, 447
AfiI	CCNNNNNNNGG	1 cut(s)	372
AgsI	TTSAA	4 cut(s)	80, 89, 283, 412
AluBI	AGCT	5 cut(s)	71, 318, 415, 529, 554
AluI	AGCT	5 cut(s)	71, 318, 415, 529, 554
Alw21I	GWGCWC	1 cut(s)	531
Alw26I	GTCTC	1 cut(s)	117
AlwI	GGATC	4 cut(s)	25, 266, 392, 405
AoxI	GGCC	2 cut(s)	263, 427
ApeKI	GCWGC	1 cut(s)	4
AspS9I	GGNCC	1 cut(s)	263
AsuHPI	GGTGA	1 cut(s)	392
BamHI	GGATCC	1 cut(s)	397
BanII	GRGCYC	1 cut(s)	531
Bbv12I	GWGCWC	1 cut(s)	531
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	3 cut(s)	101, 178, 245
BceAI	ACGGC	2 cut(s)	54, 442
BcoDI	GTCTC	1 cut(s)	117
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	2 cut(s)	364, 399
BplI	GAGNNNNNCTC	2 cut(s)	518, 550
BsaI	GGTCTC	1 cut(s)	117
BsaJI	CCNNGG	2 cut(s)	366, 430
Bsc4I	CCNNNNNNNGG	1 cut(s)	372
Bse118I	RCCGGY	1 cut(s)	230
Bse1I	ACTGG	1 cut(s)	351
Bse3DI	GCAATG	1 cut(s)	502
BseDI	CCNNGG	2 cut(s)	366, 430
BseGI	GGATG	1 cut(s)	274
BseLI	CCNNNNNNNGG	1 cut(s)	372
BseMI	GCAATG	1 cut(s)	502
BseMII	CTCAG	2 cut(s)	107, 549
BseNI	ACTGG	1 cut(s)	351
BseXI	GCAGC	1 cut(s)	16
BshFI	GGCC	2 cut(s)	265, 429
BsiHKAI	GWGCWC	1 cut(s)	531
BsiSI	CCGG	2 cut(s)	231, 266
BslI	CCNNNNNNNGG	1 cut(s)	372
BsmAI	GTCTC	1 cut(s)	117
BsnI	GGCC	2 cut(s)	265, 429
Bso31I	GGTCTC	1 cut(s)	117
Bsp1286I	GDGCHC	1 cut(s)	531
Bsp143I	GATC	4 cut(s)	30, 73, 271, 397
BspANI	GGCC	2 cut(s)	265, 429
BspCNI	CTCAG	2 cut(s)	108, 548
BspLI	GGNNCC	2 cut(s)	364, 399
BspPI	GGATC	4 cut(s)	25, 266, 392, 405
BspTNI	GGTCTC	1 cut(s)	117
BsrDI	GCAATG	1 cut(s)	502
BsrFI	RCCGGY	1 cut(s)	230
BsrI	ACTGG	1 cut(s)	351
BssAI	RCCGGY	1 cut(s)	230
BssECI	CCNNGG	2 cut(s)	366, 430
BssMI	GATC	4 cut(s)	30, 73, 271, 397
BssT1I	CCWWGG	2 cut(s)	366, 430
BstC8I	GCNNGC	2 cut(s)	43, 96
BstDEI	CTNAG	2 cut(s)	116, 535
BstF5I	GGATG	1 cut(s)	274
BstKTI	GATC	4 cut(s)	33, 76, 274, 400
BstMAI	GTCTC	1 cut(s)	117
BstMBI	GATC	4 cut(s)	30, 73, 271, 397
BstV1I	GCAGC	1 cut(s)	16
BstX2I	RGATCY	1 cut(s)	397
BstYI	RGATCY	1 cut(s)	397
BsuRI	GGCC	2 cut(s)	265, 429
BtsCI	GGATG	1 cut(s)	274
BtsI	GCAGTG	1 cut(s)	306
BtsIMutI	CAGTG	2 cut(s)	306, 358
Cac8I	GCNNGC	2 cut(s)	43, 96
Cfr10I	RCCGGY	1 cut(s)	230
Cfr13I	GGNCC	1 cut(s)	263
Csp6I	GTAC	2 cut(s)	418, 446
CviAII	CATG	1 cut(s)	372
CviQI	GTAC	2 cut(s)	418, 446
DdeI	CTNAG	2 cut(s)	116, 535
DpnI	GATC	4 cut(s)	32, 75, 273, 399
DpnII	GATC	4 cut(s)	30, 73, 271, 397
EaeI	YGGCCR	1 cut(s)	427
Ecl136II	GAGCTC	1 cut(s)	529
Eco130I	CCWWGG	2 cut(s)	366, 430
Eco24I	GRGCYC	1 cut(s)	531
Eco31I	GGTCTC	1 cut(s)	117
Eco32I	GATATC	1 cut(s)	385
Eco53kI	GAGCTC	1 cut(s)	529
EcoICRI	GAGCTC	1 cut(s)	529
EcoRV	GATATC	1 cut(s)	385
EcoT14I	CCWWGG	2 cut(s)	366, 430
EcoT38I	GRGCYC	1 cut(s)	531
ErhI	CCWWGG	2 cut(s)	366, 430
FaeI	CATG	1 cut(s)	375
FaiI	YATR	8 cut(s)	302, 304, 373, 423, 440, 483, 546, 565
FalI	AAGNNNNNCTT	2 cut(s)	60, 92
FatI	CATG	1 cut(s)	371
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	1 cut(s)	281
FriOI	GRGCYC	1 cut(s)	531
Fsp4HI	GCNGC	1 cut(s)	5
GluI	GCNGC	1 cut(s)	5
HaeIII	GGCC	2 cut(s)	265, 429
HapII	CCGG	2 cut(s)	231, 266
Hin1II	CATG	1 cut(s)	375
HindIII	AAGCTT	1 cut(s)	316
HinfI	GANTC	2 cut(s)	153, 287
HpaII	CCGG	2 cut(s)	231, 266
HphI	GGTGA	1 cut(s)	392
Hpy188I	TCNGA	1 cut(s)	117
Hpy188III	TCNNGA	1 cut(s)	28
HpyAV	CCTTC	2 cut(s)	138, 289
HpyCH4V	TGCA	2 cut(s)	4, 505
HpyF3I	CTNAG	2 cut(s)	116, 535
Hsp92II	CATG	1 cut(s)	375
Kzo9I	GATC	4 cut(s)	30, 73, 271, 397
LmnI	GCTCC	2 cut(s)	368, 513
LpnPI	CCDG	7 cut(s)	194, 244, 246, 279, 288, 364, 526
Lsp1109I	GCAGC	1 cut(s)	16
MalI	GATC	4 cut(s)	32, 75, 273, 399
MboI	GATC	4 cut(s)	30, 73, 271, 397
MboII	GAAGA	1 cut(s)	68
MflI	RGATCY	1 cut(s)	397
MhlI	GDGCHC	1 cut(s)	531
MluCI	AATT	7 cut(s)	23, 192, 238, 336, 407, 476, 558
MlyI	GAGTC	2 cut(s)	147, 296
MmeI	TCCRAC	2 cut(s)	112, 321
MnlI	CCTC	6 cut(s)	30, 44, 56, 143, 350, 371
MspI	CCGG	2 cut(s)	231, 266
NdeII	GATC	4 cut(s)	30, 73, 271, 397
NlaIII	CATG	1 cut(s)	375
NlaIV	GGNNCC	2 cut(s)	364, 399
PflMI	CCANNNNNTGG	1 cut(s)	372
PkrI	GCNGC	1 cut(s)	6
PleI	GAGTC	2 cut(s)	147, 295
PpsI	GAGTC	2 cut(s)	147, 295
Psp124BI	GAGCTC	1 cut(s)	531
PspN4I	GGNNCC	2 cut(s)	364, 399
PspPI	GGNCC	1 cut(s)	263
PsuI	RGATCY	1 cut(s)	397
RsaI	GTAC	2 cut(s)	419, 447
RsaNI	GTAC	2 cut(s)	418, 446
SacI	GAGCTC	1 cut(s)	531
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	4 cut(s)	30, 73, 271, 397
Sau96I	GGNCC	1 cut(s)	263
SchI	GAGTC	2 cut(s)	147, 296
SduI	GDGCHC	1 cut(s)	531
SgrAI	CRCCGGYG	1 cut(s)	230
Sse9I	AATT	7 cut(s)	23, 192, 238, 336, 407, 476, 558
SstI	GAGCTC	1 cut(s)	531
StyI	CCWWGG	2 cut(s)	366, 430
TasI	AATT	7 cut(s)	23, 192, 238, 336, 407, 476, 558
TatI	WGTACW	1 cut(s)	417
TscAI	CASTG	2 cut(s)	313, 358
TseI	GCWGC	1 cut(s)	4
TspRI	CASTG	2 cut(s)	313, 358
Van91I	CCANNNNNTGG	1 cut(s)	372

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.