Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0008208

Physical Location & Seq

Genomic Coordinates Forward (+)

62712280 .. 62713927

Gene Structure 1648 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00382980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGCTTCTTTGTACTCTTCTAATTTCAACAGAACCATGCAGCGTTTCTCATTTCCTCAGTTCTTGATCCTCACTGCTTGCCTCTCACTTTGTTTGGTTGCTAAAGCTGATCTTCAACTTTTTCAACAGCAAGCAAATGCAGATGGGTCTCTGAGTTTCTTGGTCGTTGGAGATTGGGGAAGACGAGGACTCTACAACCAATCTATAGTCGCTACCCAGATGGGAATAATTGGAGAGAAAGCACAGACAAACTTCGTCATCTCCACCGGCGACAATTTCTACGATGATGGCTTGACAGGGCCGGAAGATCCAGCCTTCAATGAGTCATTTTCCGACATATACACTGCCCCAAGCTTACAGATACCTTGGTACATTGCAATCGCAGAGTTTTTCTTCGTGGACACAACCCCATTTGTGGATGACTACTTTACAAATCCAGAGGAGCATGTCTATGACTGGAGAGGTGTGCTTCCTCGAGAGGATTACCTTTCAAAACTCCTGAAGGATCTGGATGTAACACTGAAAAATTCCCGTGCAAAATGGAAAATTGTGGTCGGTCACCATACAATTAGAAGTGCAGGACATCATGGGAACACCACAGATCTTGTAACCCACCTTCTCCCAGTCCTTAAGGCAAACAAAATAGATTTTTATGTAAACGGACATGACCATTGCTTGCAGCACATCAGTGATCCTGACAGTGGAGGTGGCTCCAAGGCATGGAGAGGTGATATAAAGTGGTGGGATCCAAGAGAATTGAAGCTGTACTACGACGGCCAAGGTTTTATGTCAGTACAAATGACTAAAACCCGTGCTGATATACAATTCTATGATGTCTCTGGCAATGTTTTGCACAAATGGAGAAAATCCAAAGAGGTCAACTCAGTCACGCATAGGTTACCAATGCTTGGAAGAAAAGCTCTGATGTATGAAGGAAGGGTTGTATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko04142 ko04380 ko05323 map00740 map01100 map04142 map04380 map05323

Pfam Domains

Protein Families

Metallophos

Protein Analysis

315

Amino Acids

35.86

Weight (kDa)

6.41

Isoelectric Point (pI)

30.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	52 - 225	4.3e-07	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01880
fragaria_vesca	FvH4_4g33012 FvH4_4g33012 FvH4_4g33012
malus_domestica	MD13G1016100.v1.1
prunus_persica	Prupe.1G337500_v2.0.a1 Prupe.1G337500_v2.0.a1 Prupe.1G337500_v2.0.a1
pyrus_communis	pycom13g01380
rosa_chinensis	RchiOBHm_Chr4g0442071
rosa_laevigata	RLG00000006043 RLG00000006044 RLG00000006047
rosa_multiflora	Rmu_sc0002501.1_g000007
rosa_roxburghii	Rroxscaffold_5G00382980
rosa_rugosa	Rorug04G0338600
rosa_samantha	Rh4AG390100 Rh4BG403500 Rh4BG403600 Rh4CG418600 Rh4CG418700 Rh4DG396700
rosa_wichuraiana	Rw4G033710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	720, 908
AclWI	GGATC	6 cut(s)	61, 302, 513, 686, 740, 753
AcoI	YGGCCR	1 cut(s)	775
AcsI	RAATTY	1 cut(s)	526
AcuI	CTGAAG	1 cut(s)	521
AfaI	GTAC	4 cut(s)	14, 371, 767, 795
AfiI	CCNNNNNNNGG	4 cut(s)	415, 701, 720, 908
AflII	CTTAAG	1 cut(s)	629
AgsI	TTSAA	6 cut(s)	28, 116, 125, 319, 492, 760
AleI	CACNNNNGTG	1 cut(s)	687
AluBI	AGCT	4 cut(s)	107, 354, 763, 920
AluI	AGCT	4 cut(s)	107, 354, 763, 920
Alw26I	GTCTC	2 cut(s)	153, 841
AlwI	GGATC	6 cut(s)	61, 302, 513, 686, 740, 753
Ama87I	CYCGRG	1 cut(s)	474
AoxI	GGCC	2 cut(s)	299, 775
ApeKI	GCWGC	2 cut(s)	40, 679
ApoI	RAATTY	1 cut(s)	526
AspS9I	GGNCC	1 cut(s)	299
AsuHPI	GGTGA	2 cut(s)	551, 740
AvaI	CYCGRG	1 cut(s)	474
BaeI	ACNNNNGTAYC	2 cut(s)	353, 386
BamHI	GGATCC	1 cut(s)	745
BarI	GAAGNNNNNNTAC	4 cut(s)	600, 632, 752, 784
BbsI	GAAGAC	1 cut(s)	187
BbvI	GCAGC	2 cut(s)	52, 691
BccI	CCATC	3 cut(s)	137, 214, 281
BceAI	ACGGC	1 cut(s)	790
BcoDI	GTCTC	2 cut(s)	153, 841
BfmI	CTRYAG	1 cut(s)	204
BfrI	CTTAAG	1 cut(s)	629
BglII	AGATCT	1 cut(s)	601
BisI	GCNGC	2 cut(s)	41, 680
BlsI	GCNGC	2 cut(s)	42, 681
BmeT110I	CYCGRG	1 cut(s)	474
BmgT120I	GGNCC	1 cut(s)	299
BmiI	GGNNCC	2 cut(s)	712, 747
BmrI	ACTGGG	1 cut(s)	617
BmuI	ACTGGG	1 cut(s)	617
BpiI	GAAGAC	1 cut(s)	187
BplI	GAGNNNNNCTC	2 cut(s)	866, 898
BpmI	CTGGAG	1 cut(s)	478
BsaI	GGTCTC	1 cut(s)	153
BsaJI	CCNNGG	3 cut(s)	365, 714, 778
Bsc4I	CCNNNNNNNGG	4 cut(s)	415, 701, 720, 908
Bse118I	RCCGGY	1 cut(s)	266
Bse1I	ACTGG	2 cut(s)	461, 623
Bse3DI	GCAATG	3 cut(s)	372, 670, 850
BseDI	CCNNGG	3 cut(s)	365, 714, 778
BseGI	GGATG	2 cut(s)	424, 517
BseLI	CCNNNNNNNGG	4 cut(s)	415, 701, 720, 908
BseMI	GCAATG	3 cut(s)	372, 670, 850
BseMII	CTCAG	3 cut(s)	71, 143, 897
BseNI	ACTGG	2 cut(s)	461, 623
BseRI	GAGGAG	1 cut(s)	455
BseXI	GCAGC	2 cut(s)	52, 691
BsgI	GTGCAG	1 cut(s)	597
BshFI	GGCC	2 cut(s)	301, 777
BsiHKCI	CYCGRG	1 cut(s)	474
BsiSI	CCGG	2 cut(s)	267, 302
BslI	CCNNNNNNNGG	4 cut(s)	415, 701, 720, 908
BsmAI	GTCTC	2 cut(s)	153, 841
BsnI	GGCC	2 cut(s)	301, 777
Bso31I	GGTCTC	1 cut(s)	153
BsoBI	CYCGRG	1 cut(s)	474
Bsp143I	GATC	7 cut(s)	66, 109, 307, 505, 601, 691, 745
BspANI	GGCC	2 cut(s)	301, 777
BspCNI	CTCAG	3 cut(s)	70, 144, 896
BspLI	GGNNCC	2 cut(s)	712, 747
BspPI	GGATC	6 cut(s)	61, 302, 513, 686, 740, 753
BspTI	CTTAAG	1 cut(s)	629
BspTNI	GGTCTC	1 cut(s)	153
BsrDI	GCAATG	3 cut(s)	372, 670, 850
BsrFI	RCCGGY	1 cut(s)	266
BsrI	ACTGG	2 cut(s)	461, 623
BssAI	RCCGGY	1 cut(s)	266
BssECI	CCNNGG	3 cut(s)	365, 714, 778
BssMI	GATC	7 cut(s)	66, 109, 307, 505, 601, 691, 745
BssT1I	CCWWGG	3 cut(s)	365, 714, 778
Bst4CI	ACNGT	1 cut(s)	701
Bst6I	CTCTTC	1 cut(s)	22
BstAFI	CTTAAG	1 cut(s)	629
BstC8I	GCNNGC	3 cut(s)	79, 132, 677
BstDEI	CTNAG	3 cut(s)	57, 152, 883
BstEII	GGTNACC	2 cut(s)	557, 897
BstF5I	GGATG	2 cut(s)	424, 517
BstKTI	GATC	7 cut(s)	69, 112, 310, 508, 604, 694, 748
BstMAI	GTCTC	2 cut(s)	153, 841
BstMBI	GATC	7 cut(s)	66, 109, 307, 505, 601, 691, 745
BstNSI	RCATGY	1 cut(s)	449
BstPI	GGTNACC	2 cut(s)	557, 897
BstSFI	CTRYAG	1 cut(s)	204
BstV1I	GCAGC	2 cut(s)	52, 691
BstV2I	GAAGAC	1 cut(s)	187
BstX2I	RGATCY	4 cut(s)	307, 505, 601, 745
BstYI	RGATCY	4 cut(s)	307, 505, 601, 745
BsuRI	GGCC	2 cut(s)	301, 777
BtsCI	GGATG	2 cut(s)	424, 517
BtsI	GCAGTG	2 cut(s)	72, 342
BtsIMutI	CAGTG	5 cut(s)	72, 342, 518, 694, 706
Cac8I	GCNNGC	3 cut(s)	79, 132, 677
Cfr10I	RCCGGY	1 cut(s)	266
Cfr13I	GGNCC	1 cut(s)	299
Csp6I	GTAC	4 cut(s)	13, 370, 766, 794
CspCI	CAANNNNNGTGG	2 cut(s)	586, 621
CviAII	CATG	5 cut(s)	37, 446, 587, 665, 720
CviQI	GTAC	4 cut(s)	13, 370, 766, 794
DdeI	CTNAG	3 cut(s)	57, 152, 883
DpnI	GATC	7 cut(s)	68, 111, 309, 507, 603, 693, 747
DpnII	GATC	7 cut(s)	66, 109, 307, 505, 601, 691, 745
EaeI	YGGCCR	1 cut(s)	775
Eam1104I	CTCTTC	1 cut(s)	22
EarI	CTCTTC	1 cut(s)	22
Eco130I	CCWWGG	3 cut(s)	365, 714, 778
Eco31I	GGTCTC	1 cut(s)	153
Eco57I	CTGAAG	1 cut(s)	521
Eco88I	CYCGRG	1 cut(s)	474
Eco91I	GGTNACC	2 cut(s)	557, 897
EcoO65I	GGTNACC	2 cut(s)	557, 897
EcoT14I	CCWWGG	3 cut(s)	365, 714, 778
ErhI	CCWWGG	3 cut(s)	365, 714, 778
FaeI	CATG	5 cut(s)	40, 449, 590, 668, 723
FalI	AAGNNNNNCTT	2 cut(s)	96, 128
FatI	CATG	5 cut(s)	36, 445, 586, 664, 719
Fnu4HI	GCNGC	2 cut(s)	41, 680
FokI	GGATG	2 cut(s)	431, 524
Fsp4HI	GCNGC	2 cut(s)	41, 680
GluI	GCNGC	2 cut(s)	41, 680
GsuI	CTGGAG	1 cut(s)	478
HaeIII	GGCC	2 cut(s)	301, 777
HapII	CCGG	2 cut(s)	267, 302
Hin1II	CATG	5 cut(s)	40, 449, 590, 668, 723
HincII	GTYRAC	1 cut(s)	880
HindII	GTYRAC	1 cut(s)	880
HindIII	AAGCTT	1 cut(s)	352
HinfI	GANTC	2 cut(s)	189, 323
HpaII	CCGG	2 cut(s)	267, 302
HphI	GGTGA	2 cut(s)	551, 740
Hpy166II	GTNNAC	3 cut(s)	400, 658, 880
Hpy188I	TCNGA	3 cut(s)	153, 334, 924
Hpy188III	TCNNGA	6 cut(s)	64, 437, 476, 499, 509, 695
Hpy8I	GTNNAC	3 cut(s)	400, 658, 880
Hpy99I	CGWCG	1 cut(s)	776
HpyAV	CCTTC	5 cut(s)	325, 496, 626, 926, 930
HpyCH4III	ACNGT	1 cut(s)	701
HpyCH4V	TGCA	7 cut(s)	40, 140, 377, 536, 578, 679, 853
HpyF3I	CTNAG	3 cut(s)	57, 152, 883
Hsp92II	CATG	5 cut(s)	40, 449, 590, 668, 723
Kzo9I	GATC	7 cut(s)	66, 109, 307, 505, 601, 691, 745
LmnI	GCTCC	2 cut(s)	442, 716
Lsp1109I	GCAGC	2 cut(s)	52, 691
MaeIII	GTNAC	5 cut(s)	514, 557, 607, 886, 897
MalI	GATC	7 cut(s)	68, 111, 309, 507, 603, 693, 747
MboI	GATC	7 cut(s)	66, 109, 307, 505, 601, 691, 745
MboII	GAAGA	6 cut(s)	9, 104, 192, 317, 385, 924
MflI	RGATCY	4 cut(s)	307, 505, 601, 745
MluCI	AATT	8 cut(s)	22, 228, 274, 526, 546, 567, 755, 824
MlyI	GAGTC	2 cut(s)	183, 332
MmeI	TCCRAC	2 cut(s)	148, 357
MseI	TTAA	1 cut(s)	630
MslI	CAYNNNNRTG	2 cut(s)	450, 687
MspCI	CTTAAG	1 cut(s)	629
MspI	CCGG	2 cut(s)	267, 302
NdeII	GATC	7 cut(s)	66, 109, 307, 505, 601, 691, 745
NlaIII	CATG	5 cut(s)	40, 449, 590, 668, 723
NlaIV	GGNNCC	2 cut(s)	712, 747
NmuCI	GTSAC	2 cut(s)	557, 886
NspI	RCATGY	1 cut(s)	449
OliI	CACNNNNGTG	1 cut(s)	687
PaeR7I	CTCGAG	1 cut(s)	474
PflMI	CCANNNNNTGG	2 cut(s)	720, 908
PkrI	GCNGC	2 cut(s)	42, 681
PleI	GAGTC	2 cut(s)	183, 331
PpsI	GAGTC	2 cut(s)	183, 331
PspEI	GGTNACC	2 cut(s)	557, 897
PspN4I	GGNNCC	2 cut(s)	712, 747
PspPI	GGNCC	1 cut(s)	299
PsuI	RGATCY	4 cut(s)	307, 505, 601, 745
RsaI	GTAC	4 cut(s)	14, 371, 767, 795
RsaNI	GTAC	4 cut(s)	13, 370, 766, 794
RseI	CAYNNNNRTG	2 cut(s)	450, 687
SaqAI	TTAA	1 cut(s)	630
SatI	GCNGC	2 cut(s)	41, 680
Sau3AI	GATC	7 cut(s)	66, 109, 307, 505, 601, 691, 745
Sau96I	GGNCC	1 cut(s)	299
SchI	GAGTC	2 cut(s)	183, 332
SfcI	CTRYAG	1 cut(s)	204
Sfr274I	CTCGAG	1 cut(s)	474
SgrAI	CRCCGGYG	1 cut(s)	266
SlaI	CTCGAG	1 cut(s)	474
SmiMI	CAYNNNNRTG	2 cut(s)	450, 687
SmlI	CTYRAG	2 cut(s)	474, 629
SmoI	CTYRAG	2 cut(s)	474, 629
Sse9I	AATT	8 cut(s)	22, 228, 274, 526, 546, 567, 755, 824
StyI	CCWWGG	3 cut(s)	365, 714, 778
TaaI	ACNGT	1 cut(s)	701
TaqI	TCGA	1 cut(s)	475
TaqII	GACCGA	1 cut(s)	545
TasI	AATT	8 cut(s)	22, 228, 274, 526, 546, 567, 755, 824
TatI	WGTACW	3 cut(s)	12, 765, 793
Tru1I	TTAA	1 cut(s)	630
Tru9I	TTAA	1 cut(s)	630
TscAI	CASTG	5 cut(s)	79, 349, 525, 694, 706
TseFI	GTSAC	2 cut(s)	557, 886
TseI	GCWGC	2 cut(s)	40, 679
Tsp45I	GTSAC	2 cut(s)	557, 886
TspDTI	ATGAA	1 cut(s)	945
TspGWI	ACGGA	1 cut(s)	675
TspRI	CASTG	5 cut(s)	79, 349, 525, 694, 706
Van91I	CCANNNNNTGG	2 cut(s)	720, 908
Vha464I	CTTAAG	1 cut(s)	629
XapI	RAATTY	1 cut(s)	526
XceI	RCATGY	1 cut(s)	449
XhoI	CTCGAG	1 cut(s)	474

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.