Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0008208

Physical Location & Seq

Genomic Coordinates Reverse (-)

3823028 .. 3825037

Gene Structure 2010 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000006044

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGTGAGTCGAACATTTAATGTGACATGCATATTAAGATGTGCGGGCACTCCACCAAAAATGACCCGCGCGCTTCACCCAAGAGTTCTCCCTATACAATTGATTGGTAGAGAAGACGCACACTTTGTCATCTCGACCGGAGACAAATTTTACGAAGATTGTGTGACAGGGCACGATGATCCAGCCTTTAATGAATCATTTTTCAACATCTATACTGCCCCAAGATTACAGTCAGTATGTTACCTTGTGTTAGGAAACCATGATTATAGGGGTGATGCATCAGCACGAGAAGACATTAGCCTTCCTTGGATTTGCTTAAGGCCATTCTACGTTATGTATTTTTTCTTTGTGGACACAACATCATTTGTAGATGACTGCTCAGCAAATCCGAAGGGGCATGTCTATGACTGGAGAGGCGTGCTCCCTCAAAAGGATTACCTTTTAGATCTCCTGGAGGAAAATTGTGGTCGGTCACCATACATTAGAAGTGCAGGGCATCATGGTAACACCACTGAACTTGTAACCCAAATTCTCCCGATCCTGAAGGCAAATAATGTTGACTTTTATATAAACGGACATGACCATTGTTTGCAGCACATCAGTGATGCTGACAGTAAAATTGAGTTTTTTACAAGTGGAGGTGGTTCCAAGGCATGGAGAGGTGATATAAAGCCGTGGGATCCAAAAGAATTGAAGCTTTATTACGAAGACCAAGATTTTATGTCTGTTAAAATGACTGAAACCACTGATGATATACAATTCTATGATGTATTTGGCCATGTTTTACACAAATGGAGCACATCCGAAGAGCTCCACTCAGTCACGCATAGAAATTTTACCTATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko04142 ko04380 ko05323 map00740 map01100 map04142 map04380 map05323

Pfam Domains

Protein Families

Metallophos

Protein Analysis

283

Amino Acids

32.43

Weight (kDa)

5.54

Isoelectric Point (pI)

44.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	35 - 196	3e-10	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01880
fragaria_vesca	FvH4_4g33012 FvH4_4g33012 FvH4_4g33012
malus_domestica	MD13G1016100.v1.1
prunus_persica	Prupe.1G337500_v2.0.a1 Prupe.1G337500_v2.0.a1 Prupe.1G337500_v2.0.a1
pyrus_communis	pycom13g01380
rosa_chinensis	RchiOBHm_Chr4g0442071
rosa_laevigata	RLG00000006043 RLG00000006044 RLG00000006047
rosa_multiflora	Rmu_sc0002501.1_g000007
rosa_roxburghii	Rroxscaffold_5G00382980
rosa_rugosa	Rorug04G0338600
rosa_samantha	Rh4AG390100 Rh4BG403500 Rh4BG403600 Rh4CG418600 Rh4CG418700 Rh4DG396700
rosa_wichuraiana	Rw4G033710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	654
AccII	CGCG	2 cut(s)	69, 71
AciI	CCGC	2 cut(s)	44, 67
AclWI	GGATC	4 cut(s)	173, 532, 674, 687
AcoI	YGGCCR	1 cut(s)	775
AcsI	RAATTY	3 cut(s)	146, 528, 832
AcuI	CTGAAG	1 cut(s)	563
AfiI	CCNNNNNNNGG	2 cut(s)	430, 654
AflII	CTTAAG	1 cut(s)	316
AgsI	TTSAA	2 cut(s)	205, 694
AjnI	CCWGG	1 cut(s)	450
AleI	CACNNNNGTG	1 cut(s)	600
AluBI	AGCT	2 cut(s)	697, 811
AluI	AGCT	2 cut(s)	697, 811
Alw21I	GWGCWC	3 cut(s)	423, 800, 813
Alw26I	GTCTC	1 cut(s)	135
AlwI	GGATC	4 cut(s)	173, 532, 674, 687
AoxI	GGCC	2 cut(s)	320, 775
ApeKI	GCWGC	1 cut(s)	592
ApoI	RAATTY	3 cut(s)	146, 528, 832
ArsI	GACNNNNNNTTYG	2 cut(s)	107, 139
AspLEI	GCGC	2 cut(s)	71, 73
AsuHPI	GGTGA	5 cut(s)	16, 68, 284, 465, 674
BaeGI	GKGCMC	2 cut(s)	50, 174
BalI	TGGCCA	1 cut(s)	777
BamHI	GGATCC	1 cut(s)	679
BanII	GRGCYC	1 cut(s)	813
BarI	GAAGNNNNNNTAC	2 cut(s)	686, 718
BauI	CACGAG	1 cut(s)	285
BbsI	GAAGAC	3 cut(s)	120, 297, 714
Bbv12I	GWGCWC	3 cut(s)	423, 800, 813
BbvI	GCAGC	1 cut(s)	604
BceAI	ACGGC	1 cut(s)	658
BciT130I	CCWGG	1 cut(s)	452
BcoDI	GTCTC	1 cut(s)	135
BfrI	CTTAAG	1 cut(s)	316
BglII	AGATCT	1 cut(s)	445
BisI	GCNGC	1 cut(s)	593
BlpI	GCTNAGC	1 cut(s)	379
BlsI	GCNGC	1 cut(s)	594
Bme1390I	CCNGG	1 cut(s)	452
BmiI	GGNNCC	2 cut(s)	646, 681
BmrFI	CCNGG	1 cut(s)	452
BmsI	GCATC	4 cut(s)	265, 287, 505, 595
BpiI	GAAGAC	3 cut(s)	120, 297, 714
BplI	GAGNNNNNCTC	4 cut(s)	405, 437, 800, 832
BpmI	CTGGAG	2 cut(s)	430, 473
Bpu1102I	GCTNAGC	1 cut(s)	379
BsaJI	CCNNGG	3 cut(s)	305, 648, 674
BsaWI	WCCGGW	1 cut(s)	137
Bsc4I	CCNNNNNNNGG	2 cut(s)	430, 654
Bse1I	ACTGG	1 cut(s)	413
BseBI	CCWGG	1 cut(s)	452
BseDI	CCNNGG	3 cut(s)	305, 648, 674
BseGI	GGATG	1 cut(s)	800
BseLI	CCNNNNNNNGG	2 cut(s)	430, 654
BseMII	CTCAG	2 cut(s)	393, 831
BseNI	ACTGG	1 cut(s)	413
BsePI	GCGCGC	1 cut(s)	69
BseSI	GKGCMC	2 cut(s)	50, 174
BseXI	GCAGC	1 cut(s)	604
BsgI	GTGCAG	1 cut(s)	510
Bsh1236I	CGCG	2 cut(s)	69, 71
Bsh1285I	CGRYCG	1 cut(s)	138
BshFI	GGCC	2 cut(s)	322, 777
BsiEI	CGRYCG	1 cut(s)	138
BsiHKAI	GWGCWC	3 cut(s)	423, 800, 813
BsiSI	CCGG	1 cut(s)	138
BslI	CCNNNNNNNGG	2 cut(s)	430, 654
BsmAI	GTCTC	1 cut(s)	135
BsnI	GGCC	2 cut(s)	322, 777
Bsp1286I	GDGCHC	5 cut(s)	50, 174, 423, 800, 813
Bsp143I	GATC	4 cut(s)	178, 445, 537, 679
Bsp1720I	GCTNAGC	1 cut(s)	379
BspACI	CCGC	2 cut(s)	44, 67
BspANI	GGCC	2 cut(s)	322, 777
BspCNI	CTCAG	2 cut(s)	392, 830
BspFNI	CGCG	2 cut(s)	69, 71
BspLI	GGNNCC	2 cut(s)	646, 681
BspPI	GGATC	4 cut(s)	173, 532, 674, 687
BspQI	GCTCTTC	1 cut(s)	801
BspTI	CTTAAG	1 cut(s)	316
BsrI	ACTGG	1 cut(s)	413
BssECI	CCNNGG	3 cut(s)	305, 648, 674
BssHII	GCGCGC	1 cut(s)	69
BssMI	GATC	4 cut(s)	178, 445, 537, 679
BssSI	CACGAG	1 cut(s)	285
BssT1I	CCWWGG	2 cut(s)	305, 648
Bst2BI	CACGAG	1 cut(s)	285
Bst2UI	CCWGG	1 cut(s)	452
Bst4CI	ACNGT	2 cut(s)	231, 614
Bst6I	CTCTTC	1 cut(s)	801
BstAFI	CTTAAG	1 cut(s)	316
BstC8I	GCNNGC	3 cut(s)	46, 71, 419
BstDEI	CTNAG	2 cut(s)	379, 817
BstDSI	CCRYGG	1 cut(s)	674
BstEII	GGTNACC	1 cut(s)	471
BstF5I	GGATG	1 cut(s)	800
BstFNI	CGCG	2 cut(s)	69, 71
BstHHI	GCGC	2 cut(s)	71, 73
BstKTI	GATC	4 cut(s)	181, 448, 540, 682
BstMAI	GTCTC	1 cut(s)	135
BstMBI	GATC	4 cut(s)	178, 445, 537, 679
BstMCI	CGRYCG	1 cut(s)	138
BstNI	CCWGG	1 cut(s)	452
BstNSI	RCATGY	2 cut(s)	30, 401
BstPI	GGTNACC	1 cut(s)	471
BstSCI	CCNGG	1 cut(s)	450
BstSLI	GKGCMC	2 cut(s)	50, 174
BstUI	CGCG	2 cut(s)	69, 71
BstV1I	GCAGC	1 cut(s)	604
BstV2I	GAAGAC	3 cut(s)	120, 297, 714
BstX2I	RGATCY	2 cut(s)	445, 679
BstYI	RGATCY	2 cut(s)	445, 679
BsuRI	GGCC	2 cut(s)	322, 777
BtgI	CCRYGG	1 cut(s)	674
BtsCI	GGATG	1 cut(s)	800
BtsIMutI	CAGTG	3 cut(s)	510, 607, 744
Cac8I	GCNNGC	3 cut(s)	46, 71, 419
CfoI	GCGC	2 cut(s)	71, 73
CseI	GACGC	1 cut(s)	125
CspCI	CAANNNNNGTGG	2 cut(s)	499, 534
CviAII	CATG	7 cut(s)	27, 260, 398, 500, 578, 654, 779
CviJI	RGCY	7 cut(s)	185, 300, 322, 673, 697, 777, 811
CviKI_1	RGCY	7 cut(s)	185, 300, 322, 673, 697, 777, 811
DdeI	CTNAG	2 cut(s)	379, 817
DpnI	GATC	4 cut(s)	180, 447, 539, 681
DpnII	GATC	4 cut(s)	178, 445, 537, 679
EaeI	YGGCCR	1 cut(s)	775
Eam1104I	CTCTTC	1 cut(s)	801
EarI	CTCTTC	1 cut(s)	801
Ecl136II	GAGCTC	1 cut(s)	811
Eco130I	CCWWGG	2 cut(s)	305, 648
Eco24I	GRGCYC	1 cut(s)	813
Eco53kI	GAGCTC	1 cut(s)	811
Eco57I	CTGAAG	1 cut(s)	563
Eco91I	GGTNACC	1 cut(s)	471
EcoICRI	GAGCTC	1 cut(s)	811
EcoO65I	GGTNACC	1 cut(s)	471
EcoRII	CCWGG	1 cut(s)	450
EcoT14I	CCWWGG	2 cut(s)	305, 648
EcoT22I	ATGCAT	2 cut(s)	32, 280
EcoT38I	GRGCYC	1 cut(s)	813
ErhI	CCWWGG	2 cut(s)	305, 648
FaeI	CATG	7 cut(s)	30, 263, 401, 503, 581, 657, 782
FatI	CATG	7 cut(s)	26, 259, 397, 499, 577, 653, 778
FauI	CCCGC	2 cut(s)	37, 74
Fnu4HI	GCNGC	1 cut(s)	593
FokI	GGATG	1 cut(s)	787
FriOI	GRGCYC	1 cut(s)	813
Fsp4HI	GCNGC	1 cut(s)	593
GlaI	GCGC	2 cut(s)	70, 72
GluI	GCNGC	1 cut(s)	593
GsuI	CTGGAG	2 cut(s)	430, 473
HaeIII	GGCC	2 cut(s)	322, 777
HapII	CCGG	1 cut(s)	138
HgaI	GACGC	1 cut(s)	125
HhaI	GCGC	2 cut(s)	71, 73
Hin1II	CATG	7 cut(s)	30, 263, 401, 503, 581, 657, 782
Hin6I	GCGC	2 cut(s)	69, 71
HinP1I	GCGC	2 cut(s)	69, 71
HincII	GTYRAC	1 cut(s)	559
HindII	GTYRAC	1 cut(s)	559
HindIII	AAGCTT	1 cut(s)	695
HinfI	GANTC	2 cut(s)	7, 194
HpaII	CCGG	1 cut(s)	138
HphI	GGTGA	5 cut(s)	16, 68, 284, 465, 674
Hpy166II	GTNNAC	2 cut(s)	352, 559
Hpy188I	TCNGA	2 cut(s)	390, 805
Hpy188III	TCNNGA	3 cut(s)	133, 535, 541
Hpy8I	GTNNAC	2 cut(s)	352, 559
HpyAV	CCTTC	3 cut(s)	311, 385, 538
HpyCH4III	ACNGT	2 cut(s)	231, 614
HpyCH4IV	ACGT	1 cut(s)	330
HpyCH4V	TGCA	4 cut(s)	30, 278, 491, 592
HpyF3I	CTNAG	2 cut(s)	379, 817
HpySE526I	ACGT	1 cut(s)	330
Hsp92II	CATG	7 cut(s)	30, 263, 401, 503, 581, 657, 782
HspAI	GCGC	2 cut(s)	69, 71
Kzo9I	GATC	4 cut(s)	178, 445, 537, 679
LguI	GCTCTTC	1 cut(s)	801
LmnI	GCTCC	3 cut(s)	426, 795, 816
LpnPI	CCDG	8 cut(s)	151, 153, 195, 394, 437, 464, 477, 554
Lsp1109I	GCAGC	1 cut(s)	604
LweI	GCATC	4 cut(s)	265, 287, 505, 595
MaeII	ACGT	1 cut(s)	330
MaeIII	GTNAC	7 cut(s)	22, 163, 239, 471, 503, 520, 820
MalI	GATC	4 cut(s)	180, 447, 539, 681
MboI	GATC	4 cut(s)	178, 445, 537, 679
MboII	GAAGA	5 cut(s)	125, 167, 302, 719, 818
MfeI	CAATTG	1 cut(s)	98
MflI	RGATCY	2 cut(s)	445, 679
MhlI	GDGCHC	5 cut(s)	50, 174, 423, 800, 813
MlsI	TGGCCA	1 cut(s)	777
MluCI	AATT	8 cut(s)	98, 146, 460, 528, 618, 689, 758, 832
MluNI	TGGCCA	1 cut(s)	777
MlyI	GAGTC	1 cut(s)	16
MnlI	CCTC	5 cut(s)	407, 435, 448, 632, 653
Mox20I	TGGCCA	1 cut(s)	777
Mph1103I	ATGCAT	2 cut(s)	32, 280
MscI	TGGCCA	1 cut(s)	777
MseI	TTAA	6 cut(s)	18, 35, 189, 317, 729, 847
MslI	CAYNNNNRTG	2 cut(s)	402, 600
Msp20I	TGGCCA	1 cut(s)	777
MspCI	CTTAAG	1 cut(s)	316
MspI	CCGG	1 cut(s)	138
MspR9I	CCNGG	1 cut(s)	452
MunI	CAATTG	1 cut(s)	98
MvaI	CCWGG	1 cut(s)	452
MvnI	CGCG	2 cut(s)	69, 71
NdeII	GATC	4 cut(s)	178, 445, 537, 679
NlaIII	CATG	7 cut(s)	30, 263, 401, 503, 581, 657, 782
NlaIV	GGNNCC	2 cut(s)	646, 681
NmuCI	GTSAC	4 cut(s)	22, 163, 471, 820
NsiI	ATGCAT	2 cut(s)	32, 280
NspI	RCATGY	2 cut(s)	30, 401
OliI	CACNNNNGTG	1 cut(s)	600
PauI	GCGCGC	1 cut(s)	69
PciSI	GCTCTTC	1 cut(s)	801
PfeI	GAWTC	1 cut(s)	194
PflMI	CCANNNNNTGG	1 cut(s)	654
PfoI	TCCNGGA	1 cut(s)	450
PkrI	GCNGC	1 cut(s)	594
PleI	GAGTC	1 cut(s)	15
PpsI	GAGTC	1 cut(s)	15
Psp124BI	GAGCTC	1 cut(s)	813
Psp6I	CCWGG	1 cut(s)	450
PspEI	GGTNACC	1 cut(s)	471
PspGI	CCWGG	1 cut(s)	450
PspN4I	GGNNCC	2 cut(s)	646, 681
PsuI	RGATCY	2 cut(s)	445, 679
PteI	GCGCGC	1 cut(s)	69
RseI	CAYNNNNRTG	2 cut(s)	402, 600
SacI	GAGCTC	1 cut(s)	813
SapI	GCTCTTC	1 cut(s)	801
SaqAI	TTAA	6 cut(s)	18, 35, 189, 317, 729, 847
SatI	GCNGC	1 cut(s)	593
Sau3AI	GATC	4 cut(s)	178, 445, 537, 679
SchI	GAGTC	1 cut(s)	16
ScrFI	CCNGG	1 cut(s)	452
SduI	GDGCHC	5 cut(s)	50, 174, 423, 800, 813
SetI	ASST	8 cut(s)	246, 333, 441, 643, 664, 699, 813, 842
SfaNI	GCATC	4 cut(s)	265, 287, 505, 595
SmiMI	CAYNNNNRTG	2 cut(s)	402, 600
SmlI	CTYRAG	1 cut(s)	316
SmoI	CTYRAG	1 cut(s)	316
Sse9I	AATT	8 cut(s)	98, 146, 460, 528, 618, 689, 758, 832
SsiI	CCGC	2 cut(s)	44, 67
SstI	GAGCTC	1 cut(s)	813
StyD4I	CCNGG	1 cut(s)	450
StyI	CCWWGG	2 cut(s)	305, 648
TaaI	ACNGT	2 cut(s)	231, 614
TaiI	ACGT	1 cut(s)	333
TaqI	TCGA	2 cut(s)	10, 134
TaqII	GACCGA	1 cut(s)	459
TasI	AATT	8 cut(s)	98, 146, 460, 528, 618, 689, 758, 832
TfiI	GAWTC	1 cut(s)	194
Tru1I	TTAA	6 cut(s)	18, 35, 189, 317, 729, 847
Tru9I	TTAA	6 cut(s)	18, 35, 189, 317, 729, 847
TscAI	CASTG	3 cut(s)	517, 607, 751
TseFI	GTSAC	4 cut(s)	22, 163, 471, 820
TseI	GCWGC	1 cut(s)	592
Tsp45I	GTSAC	4 cut(s)	22, 163, 471, 820
TspDTI	ATGAA	1 cut(s)	207
TspGWI	ACGGA	1 cut(s)	588
TspRI	CASTG	3 cut(s)	517, 607, 751
Van91I	CCANNNNNTGG	1 cut(s)	654
Vha464I	CTTAAG	1 cut(s)	316
XapI	RAATTY	3 cut(s)	146, 528, 832
XceI	RCATGY	2 cut(s)	30, 401
Zsp2I	ATGCAT	2 cut(s)	32, 280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.