Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0008208

Physical Location & Seq

Genomic Coordinates Forward (+)

60840290 .. 60859098

Gene Structure 18809 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G033710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGCAGCTTTTATCCTTCCGAAGTCAGTTCATGATCCTCACGGCTTGTCTCTCACTTTGTTTGGTTGCTAAAGCTGAGTTTCAACTTTTGCAACAGCAAACAAACGACGAAGGGTCTCTGAAATCCTTCGTTGTTGGAGATTGGGGCAGACGAGGACTCTACAACCAATCTCAAGTTGCAGCCCAGATGGGATTAATCGCGAACAAAGAAAACATAGACCTTGTTTTCTCCACCGGTGACAATTTCTACGACGATGGTTTGAAAGGCGTTTATGATCCAGCTTTTAAAGAATCATTCTCCAACATCTACAATGCCCAAAGCTTAAAGAAACCATATTGGTTCAGTGTATTGGGTAACCATGACTATCGTGGTAACGTTCTAGCACAACTGAATCCACTCCTCAAACGCATTGACAGTAGATGGTTTTGCTATAGATCATTCCATATCGGTTATGCAGCAATCGCAGAGTTTTTCTTCGTGGACACAACCCCATTTGTGGATGACTACTTTACAAATCCAAAGGAGCATGTCTATGACTGGAGAGGTGTGCTTCCTCGAGAGGATTACCTTTCAAAACTCCTGAAGGATCTGGATGTAACACTGAAAAATTCCCGTGCAAAATGGAAAATTGTGGTCGGTCACCATACAATTAGAAGTGCAGGACATCATGGTAACACCACTGATCTTGTAACCCACCTTCTCCCAGTCCTTAAGGCAAACAAAATAGATTTTTATATAAACGGGCATGACCATTGCTTGCAGCACATCAGTGATCCTGACAGTAAAATTGAGTTTTTTACCAGTGGAGGTGGCTCCAAGGCATGGAGAGGTGATATCAAGTGGTGGGATCCAAAAGAATTGAAGCTGTACTATGACGGCCAAGGTTTTATGTCGGTACAAATGACTAAAACCCGTGCTGACTTACAATTCTATGATGTCTTTGGCAATGTTTTGCACAAATGGAGCAAAACCAAAGAGCTCAACTCAGTCAGGCATAGGAAACCTCTGATTGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko04142 ko04380 ko05323 map00740 map01100 map04142 map04380 map05323

Pfam Domains

Protein Families

Metallophos

Protein Analysis

338

Amino Acids

39.01

Weight (kDa)

8.81

Isoelectric Point (pI)

37.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	43 - 252	1.6e-16	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01880
fragaria_vesca	FvH4_4g33012 FvH4_4g33012 FvH4_4g33012
malus_domestica	MD13G1016100.v1.1
prunus_persica	Prupe.1G337500_v2.0.a1 Prupe.1G337500_v2.0.a1 Prupe.1G337500_v2.0.a1
pyrus_communis	pycom13g01380
rosa_chinensis	RchiOBHm_Chr4g0442071
rosa_laevigata	RLG00000006043 RLG00000006044 RLG00000006047
rosa_multiflora	Rmu_sc0002501.1_g000007
rosa_roxburghii	Rroxscaffold_5G00382980
rosa_rugosa	Rorug04G0338600
rosa_samantha	Rh4AG390100 Rh4BG403500 Rh4BG403600 Rh4CG418600 Rh4CG418700 Rh4DG396700
rosa_wichuraiana	Rw4G033710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	822
AccII	CGCG	1 cut(s)	200
AclI	AACGTT	1 cut(s)	375
AclWI	GGATC	6 cut(s)	28, 269, 594, 767, 842, 855
AcoI	YGGCCR	1 cut(s)	877
AcsI	RAATTY	1 cut(s)	607
AcuI	CTGAAG	1 cut(s)	602
AfaI	GTAC	2 cut(s)	869, 897
AfiI	CCNNNNNNNGG	2 cut(s)	496, 822
AflII	CTTAAG	1 cut(s)	710
AgeI	ACCGGT	1 cut(s)	233
AgsI	TTSAA	4 cut(s)	83, 262, 573, 862
AhdI	GACNNNNNGTC	1 cut(s)	112
AleI	CACNNNNGTG	1 cut(s)	768
AluBI	AGCT	6 cut(s)	7, 74, 281, 321, 865, 979
AluI	AGCT	6 cut(s)	7, 74, 281, 321, 865, 979
Alw21I	GWGCWC	1 cut(s)	981
Alw26I	GTCTC	2 cut(s)	53, 120
AlwI	GGATC	6 cut(s)	28, 269, 594, 767, 842, 855
Ama87I	CYCGRG	1 cut(s)	555
AoxI	GGCC	1 cut(s)	877
ApeKI	GCWGC	4 cut(s)	4, 179, 455, 760
ApoI	RAATTY	1 cut(s)	607
AseI	ATTAAT	1 cut(s)	194
AsiGI	ACCGGT	1 cut(s)	233
Asp700I	GAANNNNTTC	1 cut(s)	125
AsuHPI	GGTGA	3 cut(s)	248, 632, 842
AvaI	CYCGRG	1 cut(s)	555
BamHI	GGATCC	1 cut(s)	847
BanII	GRGCYC	1 cut(s)	981
BarI	GAAGNNNNNNTAC	2 cut(s)	681, 713
Bbv12I	GWGCWC	1 cut(s)	981
BbvI	GCAGC	4 cut(s)	16, 191, 467, 772
BccI	CCATC	3 cut(s)	181, 248, 414
BceAI	ACGGC	2 cut(s)	57, 892
BcoDI	GTCTC	2 cut(s)	53, 120
BfaI	CTAG	1 cut(s)	380
BfmI	CTRYAG	1 cut(s)	430
BfrI	CTTAAG	1 cut(s)	710
BisI	GCNGC	4 cut(s)	5, 180, 456, 761
BlsI	GCNGC	4 cut(s)	6, 181, 457, 762
BmeRI	GACNNNNNGTC	1 cut(s)	112
BmeT110I	CYCGRG	1 cut(s)	555
BmiI	GGNNCC	2 cut(s)	814, 849
BmrI	ACTGGG	1 cut(s)	698
BmuI	ACTGGG	1 cut(s)	698
BplI	GAGNNNNNCTC	2 cut(s)	968, 1000
BpmI	CTGGAG	1 cut(s)	559
BpuEI	CTTGAG	1 cut(s)	156
BsaI	GGTCTC	1 cut(s)	120
BsaJI	CCNNGG	2 cut(s)	816, 880
BsaWI	WCCGGW	1 cut(s)	233
Bsc4I	CCNNNNNNNGG	2 cut(s)	496, 822
Bse118I	RCCGGY	1 cut(s)	233
Bse1I	ACTGG	3 cut(s)	542, 704, 801
Bse3DI	GCAATG	2 cut(s)	751, 952
BseDI	CCNNGG	2 cut(s)	816, 880
BseGI	GGATG	2 cut(s)	505, 598
BseLI	CCNNNNNNNGG	2 cut(s)	496, 822
BseMI	GCAATG	2 cut(s)	751, 952
BseMII	CTCAG	2 cut(s)	66, 999
BseNI	ACTGG	3 cut(s)	542, 704, 801
BseRI	GAGGAG	1 cut(s)	389
BseXI	GCAGC	4 cut(s)	16, 191, 467, 772
BsgI	GTGCAG	1 cut(s)	678
Bsh1236I	CGCG	1 cut(s)	200
BshFI	GGCC	1 cut(s)	879
BshTI	ACCGGT	1 cut(s)	233
BsiHKAI	GWGCWC	1 cut(s)	981
BsiHKCI	CYCGRG	1 cut(s)	555
BsiSI	CCGG	1 cut(s)	234
BslI	CCNNNNNNNGG	2 cut(s)	496, 822
BsmAI	GTCTC	2 cut(s)	53, 120
BsnI	GGCC	1 cut(s)	879
Bso31I	GGTCTC	1 cut(s)	120
BsoBI	CYCGRG	1 cut(s)	555
Bsp1286I	GDGCHC	1 cut(s)	981
Bsp143I	GATC	7 cut(s)	33, 274, 434, 586, 682, 772, 847
Bsp68I	TCGCGA	1 cut(s)	200
BspANI	GGCC	1 cut(s)	879
BspCNI	CTCAG	2 cut(s)	67, 998
BspFNI	CGCG	1 cut(s)	200
BspHI	TCATGA	1 cut(s)	30
BspLI	GGNNCC	2 cut(s)	814, 849
BspPI	GGATC	6 cut(s)	28, 269, 594, 767, 842, 855
BspTI	CTTAAG	1 cut(s)	710
BspTNI	GGTCTC	1 cut(s)	120
BsrDI	GCAATG	2 cut(s)	751, 952
BsrFI	RCCGGY	1 cut(s)	233
BsrI	ACTGG	3 cut(s)	542, 704, 801
BssAI	RCCGGY	1 cut(s)	233
BssECI	CCNNGG	2 cut(s)	816, 880
BssMI	GATC	7 cut(s)	33, 274, 434, 586, 682, 772, 847
BssT1I	CCWWGG	2 cut(s)	816, 880
Bst4CI	ACNGT	2 cut(s)	416, 782
BstAFI	CTTAAG	1 cut(s)	710
BstC8I	GCNNGC	1 cut(s)	758
BstDEI	CTNAG	2 cut(s)	75, 985
BstEII	GGTNACC	2 cut(s)	353, 638
BstF5I	GGATG	2 cut(s)	505, 598
BstFNI	CGCG	1 cut(s)	200
BstKTI	GATC	7 cut(s)	36, 277, 437, 589, 685, 775, 850
BstMAI	GTCTC	2 cut(s)	53, 120
BstMBI	GATC	7 cut(s)	33, 274, 434, 586, 682, 772, 847
BstMWI	GCNNNNNNNGC	1 cut(s)	461
BstNSI	RCATGY	1 cut(s)	530
BstPI	GGTNACC	2 cut(s)	353, 638
BstSFI	CTRYAG	1 cut(s)	430
BstUI	CGCG	1 cut(s)	200
BstV1I	GCAGC	4 cut(s)	16, 191, 467, 772
BstX2I	RGATCY	2 cut(s)	586, 847
BstYI	RGATCY	2 cut(s)	586, 847
BsuRI	GGCC	1 cut(s)	879
BtsCI	GGATG	2 cut(s)	505, 598
BtsIMutI	CAGTG	5 cut(s)	349, 599, 678, 775, 808
BtuMI	TCGCGA	1 cut(s)	200
Cac8I	GCNNGC	1 cut(s)	758
CciI	TCATGA	1 cut(s)	30
Cfr10I	RCCGGY	1 cut(s)	233
Csp6I	GTAC	2 cut(s)	868, 896
CspAI	ACCGGT	1 cut(s)	233
CspCI	CAANNNNNGTGG	2 cut(s)	667, 702
CviAII	CATG	6 cut(s)	31, 359, 527, 668, 746, 822
CviQI	GTAC	2 cut(s)	868, 896
DdeI	CTNAG	2 cut(s)	75, 985
DpnI	GATC	7 cut(s)	35, 276, 436, 588, 684, 774, 849
DpnII	GATC	7 cut(s)	33, 274, 434, 586, 682, 772, 847
DraI	TTTAAA	1 cut(s)	286
DriI	GACNNNNNGTC	1 cut(s)	112
EaeI	YGGCCR	1 cut(s)	877
Eam1105I	GACNNNNNGTC	1 cut(s)	112
Ecl136II	GAGCTC	1 cut(s)	979
Eco130I	CCWWGG	2 cut(s)	816, 880
Eco24I	GRGCYC	1 cut(s)	981
Eco31I	GGTCTC	1 cut(s)	120
Eco32I	GATATC	1 cut(s)	835
Eco53kI	GAGCTC	1 cut(s)	979
Eco57I	CTGAAG	1 cut(s)	602
Eco88I	CYCGRG	1 cut(s)	555
Eco91I	GGTNACC	2 cut(s)	353, 638
EcoICRI	GAGCTC	1 cut(s)	979
EcoO65I	GGTNACC	2 cut(s)	353, 638
EcoRV	GATATC	1 cut(s)	835
EcoT14I	CCWWGG	2 cut(s)	816, 880
EcoT38I	GRGCYC	1 cut(s)	981
ErhI	CCWWGG	2 cut(s)	816, 880
FaeI	CATG	6 cut(s)	34, 362, 530, 671, 749, 825
FatI	CATG	6 cut(s)	30, 358, 526, 667, 745, 821
Fnu4HI	GCNGC	4 cut(s)	5, 180, 456, 761
FokI	GGATG	2 cut(s)	512, 605
FriOI	GRGCYC	1 cut(s)	981
Fsp4HI	GCNGC	4 cut(s)	5, 180, 456, 761
FspBI	CTAG	1 cut(s)	380
GluI	GCNGC	4 cut(s)	5, 180, 456, 761
GsuI	CTGGAG	1 cut(s)	559
HaeIII	GGCC	1 cut(s)	879
HapII	CCGG	1 cut(s)	234
Hin1II	CATG	6 cut(s)	34, 362, 530, 671, 749, 825
HindIII	AAGCTT	1 cut(s)	319
HinfI	GANTC	3 cut(s)	156, 290, 391
HpaII	CCGG	1 cut(s)	234
HphI	GGTGA	3 cut(s)	248, 632, 842
Hpy166II	GTNNAC	1 cut(s)	481
Hpy188I	TCNGA	3 cut(s)	20, 120, 1008
Hpy188III	TCNNGA	6 cut(s)	31, 199, 557, 580, 590, 776
Hpy8I	GTNNAC	1 cut(s)	481
Hpy99I	CGWCG	2 cut(s)	110, 254
HpyAV	CCTTC	5 cut(s)	25, 104, 136, 577, 707
HpyCH4III	ACNGT	2 cut(s)	416, 782
HpyCH4IV	ACGT	1 cut(s)	375
HpyCH4V	TGCA	8 cut(s)	4, 91, 179, 455, 617, 659, 760, 955
HpyF10VI	GCNNNNNNNGC	1 cut(s)	461
HpyF3I	CTNAG	2 cut(s)	75, 985
HpySE526I	ACGT	1 cut(s)	375
Hsp92II	CATG	6 cut(s)	34, 362, 530, 671, 749, 825
Kzo9I	GATC	7 cut(s)	33, 274, 434, 586, 682, 772, 847
LmnI	GCTCC	3 cut(s)	523, 818, 963
Lsp1109I	GCAGC	4 cut(s)	16, 191, 467, 772
MaeI	CTAG	1 cut(s)	380
MaeII	ACGT	1 cut(s)	375
MaeIII	GTNAC	7 cut(s)	236, 353, 371, 595, 638, 671, 688
MalI	GATC	7 cut(s)	35, 276, 436, 588, 684, 774, 849
MboI	GATC	7 cut(s)	33, 274, 434, 586, 682, 772, 847
MboII	GAAGA	1 cut(s)	466
MflI	RGATCY	2 cut(s)	586, 847
MhlI	GDGCHC	1 cut(s)	981
MluCI	AATT	7 cut(s)	241, 607, 627, 648, 786, 857, 926
MlyI	GAGTC	1 cut(s)	150
MmeI	TCCRAC	2 cut(s)	115, 324
MnlI	CCTC	9 cut(s)	47, 146, 410, 536, 553, 564, 800, 821, 1014
MroXI	GAANNNNTTC	1 cut(s)	125
MseI	TTAA	4 cut(s)	194, 285, 323, 711
MslI	CAYNNNNRTG	2 cut(s)	531, 768
MspCI	CTTAAG	1 cut(s)	710
MspI	CCGG	1 cut(s)	234
MvnI	CGCG	1 cut(s)	200
MwoI	GCNNNNNNNGC	1 cut(s)	461
NdeII	GATC	7 cut(s)	33, 274, 434, 586, 682, 772, 847
NlaIII	CATG	6 cut(s)	34, 362, 530, 671, 749, 825
NlaIV	GGNNCC	2 cut(s)	814, 849
NmuCI	GTSAC	2 cut(s)	236, 638
NruI	TCGCGA	1 cut(s)	200
NspI	RCATGY	1 cut(s)	530
OliI	CACNNNNGTG	1 cut(s)	768
PaeR7I	CTCGAG	1 cut(s)	555
PagI	TCATGA	1 cut(s)	30
PdmI	GAANNNNTTC	1 cut(s)	125
PfeI	GAWTC	2 cut(s)	290, 391
PflMI	CCANNNNNTGG	1 cut(s)	822
PinAI	ACCGGT	1 cut(s)	233
PkrI	GCNGC	4 cut(s)	6, 181, 457, 762
PleI	GAGTC	1 cut(s)	150
PpsI	GAGTC	1 cut(s)	150
PshBI	ATTAAT	1 cut(s)	194
Psp124BI	GAGCTC	1 cut(s)	981
Psp1406I	AACGTT	1 cut(s)	375
PspEI	GGTNACC	2 cut(s)	353, 638
PspN4I	GGNNCC	2 cut(s)	814, 849
PsuI	RGATCY	2 cut(s)	586, 847
RruI	TCGCGA	1 cut(s)	200
RsaI	GTAC	2 cut(s)	869, 897
RsaNI	GTAC	2 cut(s)	868, 896
RseI	CAYNNNNRTG	2 cut(s)	531, 768
SacI	GAGCTC	1 cut(s)	981
SaqAI	TTAA	4 cut(s)	194, 285, 323, 711
SatI	GCNGC	4 cut(s)	5, 180, 456, 761
Sau3AI	GATC	7 cut(s)	33, 274, 434, 586, 682, 772, 847
SchI	GAGTC	1 cut(s)	150
SduI	GDGCHC	1 cut(s)	981
SfcI	CTRYAG	1 cut(s)	430
Sfr274I	CTCGAG	1 cut(s)	555
SgrAI	CRCCGGYG	1 cut(s)	233
SlaI	CTCGAG	1 cut(s)	555
SmiMI	CAYNNNNRTG	2 cut(s)	531, 768
SmlI	CTYRAG	3 cut(s)	171, 555, 710
SmoI	CTYRAG	3 cut(s)	171, 555, 710
Sse9I	AATT	7 cut(s)	241, 607, 627, 648, 786, 857, 926
SspMI	CTAG	1 cut(s)	380
SstI	GAGCTC	1 cut(s)	981
StyI	CCWWGG	2 cut(s)	816, 880
TaaI	ACNGT	2 cut(s)	416, 782
TaiI	ACGT	1 cut(s)	378
TaqI	TCGA	1 cut(s)	556
TaqII	GACCGA	1 cut(s)	626
TasI	AATT	7 cut(s)	241, 607, 627, 648, 786, 857, 926
TatI	WGTACW	1 cut(s)	867
TfiI	GAWTC	2 cut(s)	290, 391
Tru1I	TTAA	4 cut(s)	194, 285, 323, 711
Tru9I	TTAA	4 cut(s)	194, 285, 323, 711
TscAI	CASTG	5 cut(s)	349, 606, 685, 775, 808
TseFI	GTSAC	2 cut(s)	236, 638
TseI	GCWGC	4 cut(s)	4, 179, 455, 760
Tsp45I	GTSAC	2 cut(s)	236, 638
TspDTI	ATGAA	1 cut(s)	19
TspRI	CASTG	5 cut(s)	349, 606, 685, 775, 808
Van91I	CCANNNNNTGG	1 cut(s)	822
Vha464I	CTTAAG	1 cut(s)	710
VspI	ATTAAT	1 cut(s)	194
XapI	RAATTY	1 cut(s)	607
XceI	RCATGY	1 cut(s)	530
XcmI	CCANNNNNNNNNTGG	1 cut(s)	365
XhoI	CTCGAG	1 cut(s)	555
XmnI	GAANNNNTTC	1 cut(s)	125
XspI	CTAG	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.