Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0008208

Physical Location & Seq

Genomic Coordinates Forward (+)

888079 .. 891398

Gene Structure 3320 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g01380.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGATTTCCTCCCTTCACTTCAGGGGATGCCTCCTGTCACTTTGTTTGGTTGCTTGCGCAGCTGAGCTTCAACGTTTTAAGCAGGCACCAAAACCAGATGGCTCTCTCAGCTTCCTGGTTGTCGGAGATTGGGGAAGACGGGGACAATACAACCAATCTCAAGTTGCTCTCCAGATGGGGTTAATTGGAGAGAAATCAGACATAGACTTTGTCATCTCCACTGGTGATAATTTCTACGAAGATGGTTTGACAGGCGTCGATGATCCAGCATTTAACGAATCGTTTTCCAATATTTATACTGCTCCCAGCTTAAAGAAGCAATGGTACAATGTGTTGGGCAACCATGACTATCGGGGTGATGTCGAAGCACAATTGAGTCCTGTTCTCAGAGCAATTGACAGTAGATGGCTTTGCTTAAGATCATTCATTTTAGATGCAGAAATCGTAGAATTTTACTTTGTGGACACAACCCCATTTGTGGATGATTACTTTACAAATCCAAAGGAGCATACTTATGATTGGAGAGGTGTGACTCCTCGGGCGGAATACCTTTCAAATCTCTTGAAGGATGAGGATTCGGCACTGAAAATTTCCACAGCAAAATGGAAAATTGTGGTCGGTCACCATACTATTTTAAGTGCAGGACATCATGGTGTCACCGAAGAACTTGTAACCCATCTTCTCCCAATCCTTAAGTCAAATAATATCGATTTTTACGTGAATGGACATGACCATTGCTTAGAGCACATCAGTGATTCTGATAGTCAAATTCAGTTCTTTACAAGTGGAGGTGGGTCCAAGGCATGGAGAGGTGATATAAAGTCGTGGAGTCCAGAGGAGTTGAAGTTGTATTACGACGGACAAGGTTTCATGTCGTTTCACATGACCAAGGCCAGTGCTGATGTTGCATACTATGATGTTTCTGGCAATGTCTTACACAAATGGAGCATTTCCAAAGAGATCGACTCAGCCACTCACAGAACATTCACCTACTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko04142 ko04380 ko05323 map00740 map01100 map04142 map04380 map05323

Pfam Domains

Protein Families

Metallophos

Protein Analysis

333

Amino Acids

37.48

Weight (kDa)

5.39

Isoelectric Point (pI)

41.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01880
fragaria_vesca	FvH4_4g33012 FvH4_4g33012 FvH4_4g33012
malus_domestica	MD13G1016100.v1.1
prunus_persica	Prupe.1G337500_v2.0.a1 Prupe.1G337500_v2.0.a1 Prupe.1G337500_v2.0.a1
pyrus_communis	pycom13g01380
rosa_chinensis	RchiOBHm_Chr4g0442071
rosa_laevigata	RLG00000006043 RLG00000006044 RLG00000006047
rosa_multiflora	Rmu_sc0002501.1_g000007
rosa_roxburghii	Rroxscaffold_5G00382980
rosa_rugosa	Rorug04G0338600
rosa_samantha	Rh4AG390100 Rh4BG403500 Rh4BG403600 Rh4CG418600 Rh4CG418700 Rh4DG396700
rosa_wichuraiana	Rw4G033710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	58
AccB1I	GGYRCC	1 cut(s)	85
AccB7I	CCANNNNNTGG	1 cut(s)	804
AciI	CCGC	1 cut(s)	542
AclI	AACGTT	1 cut(s)	73
AclWI	GGATC	1 cut(s)	257
AcsI	RAATTY	3 cut(s)	449, 588, 768
AcuI	CTGAAG	1 cut(s)	4
AcyI	GRCGYC	1 cut(s)	255
AfaI	GTAC	1 cut(s)	326
AfiI	CCNNNNNNNGG	2 cut(s)	478, 804
AflII	CTTAAG	2 cut(s)	415, 692
AgsI	TTSAA	4 cut(s)	71, 555, 565, 844
AjnI	CCWGG	1 cut(s)	114
AleI	CACNNNNGTG	1 cut(s)	750
AluBI	AGCT	4 cut(s)	62, 67, 111, 309
AluI	AGCT	4 cut(s)	62, 67, 111, 309
Alw21I	GWGCWC	1 cut(s)	747
AlwI	GGATC	1 cut(s)	257
Ama87I	CYCGRG	1 cut(s)	537
AoxI	GGCC	1 cut(s)	891
ApeKI	GCWGC	1 cut(s)	59
ApoI	RAATTY	3 cut(s)	449, 588, 768
ArsI	GACNNNNNNTTYG	2 cut(s)	191, 223
AspLEI	GCGC	1 cut(s)	59
AspS9I	GGNCC	1 cut(s)	795
AsuHPI	GGTGA	6 cut(s)	236, 368, 614, 649, 824, 979
AvaI	CYCGRG	1 cut(s)	537
AvaII	GGWCC	1 cut(s)	795
BanI	GGYRCC	1 cut(s)	85
BarI	GAAGNNNNNNTAC	6 cut(s)	308, 340, 663, 695, 836, 868
BbsI	GAAGAC	1 cut(s)	142
Bbv12I	GWGCWC	1 cut(s)	747
BbvI	GCAGC	1 cut(s)	71
BccI	CCATC	5 cut(s)	92, 169, 236, 399, 684
BciT130I	CCWGG	1 cut(s)	116
BfrI	CTTAAG	2 cut(s)	415, 692
BisI	GCNGC	1 cut(s)	60
BlpI	GCTNAGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	61
Bme1390I	CCNGG	1 cut(s)	116
Bme18I	GGWCC	1 cut(s)	795
BmeT110I	CYCGRG	1 cut(s)	537
BmgT120I	GGNCC	1 cut(s)	795
BmiI	GGNNCC	2 cut(s)	87, 796
BmrFI	CCNGG	1 cut(s)	116
BmsI	GCATC	2 cut(s)	17, 424
BoxI	GACNNNNGTC	1 cut(s)	254
BpiI	GAAGAC	1 cut(s)	142
BplI	GAGNNNNNCTC	2 cut(s)	950, 982
BpmI	CTGGAG	1 cut(s)	155
Bpu1102I	GCTNAGC	1 cut(s)	63
BpuEI	CTTGAG	1 cut(s)	144
Bsa29I	ATCGAT	1 cut(s)	708
BsaAI	YACGTR	1 cut(s)	718
BsaHI	GRCGYC	1 cut(s)	255
BsaJI	CCNNGG	3 cut(s)	536, 798, 888
BsaXI	ACNNNNNCTCC	2 cut(s)	830, 860
Bsc4I	CCNNNNNNNGG	2 cut(s)	478, 804
Bse1I	ACTGG	2 cut(s)	226, 894
Bse3DI	GCAATG	3 cut(s)	326, 733, 934
BseBI	CCWGG	1 cut(s)	116
BseCI	ATCGAT	1 cut(s)	708
BseDI	CCNNGG	3 cut(s)	536, 798, 888
BseGI	GGATG	3 cut(s)	32, 487, 574
BseLI	CCNNNNNNNGG	2 cut(s)	478, 804
BseMI	GCAATG	3 cut(s)	326, 733, 934
BseMII	CTCAG	4 cut(s)	54, 121, 400, 981
BseNI	ACTGG	2 cut(s)	226, 894
BseRI	GAGGAG	2 cut(s)	525, 851
BseXI	GCAGC	1 cut(s)	71
BseYI	CCCAGC	1 cut(s)	305
BsgI	GTGCAG	1 cut(s)	660
BshFI	GGCC	1 cut(s)	893
BshNI	GGYRCC	1 cut(s)	85
BshVI	ATCGAT	1 cut(s)	708
BsiHKAI	GWGCWC	1 cut(s)	747
BsiHKCI	CYCGRG	1 cut(s)	537
BslFI	GGGAC	1 cut(s)	156
BslI	CCNNNNNNNGG	2 cut(s)	478, 804
BsmFI	GGGAC	1 cut(s)	156
BsnI	GGCC	1 cut(s)	893
BsoBI	CYCGRG	1 cut(s)	537
Bsp1286I	GDGCHC	1 cut(s)	747
Bsp143I	GATC	3 cut(s)	262, 419, 960
Bsp1720I	GCTNAGC	1 cut(s)	63
BspACI	CCGC	1 cut(s)	542
BspANI	GGCC	1 cut(s)	893
BspCNI	CTCAG	4 cut(s)	55, 120, 399, 980
BspDI	ATCGAT	1 cut(s)	708
BspLI	GGNNCC	2 cut(s)	87, 796
BspPI	GGATC	1 cut(s)	257
BspT107I	GGYRCC	1 cut(s)	85
BspTI	CTTAAG	2 cut(s)	415, 692
BsrDI	GCAATG	3 cut(s)	326, 733, 934
BsrI	ACTGG	2 cut(s)	226, 894
BssECI	CCNNGG	3 cut(s)	536, 798, 888
BssMI	GATC	3 cut(s)	262, 419, 960
BssNI	GRCGYC	1 cut(s)	255
BssT1I	CCWWGG	2 cut(s)	798, 888
Bst2UI	CCWGG	1 cut(s)	116
Bst4CI	ACNGT	1 cut(s)	401
BstACI	GRCGYC	1 cut(s)	255
BstAFI	CTTAAG	2 cut(s)	415, 692
BstBAI	YACGTR	1 cut(s)	718
BstC8I	GCNNGC	2 cut(s)	55, 84
BstDEI	CTNAG	5 cut(s)	63, 107, 386, 739, 967
BstEII	GGTNACC	1 cut(s)	620
BstF5I	GGATG	3 cut(s)	32, 487, 574
BstHHI	GCGC	1 cut(s)	59
BstKTI	GATC	3 cut(s)	265, 422, 963
BstMBI	GATC	3 cut(s)	262, 419, 960
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 108, 905
BstNI	CCWGG	1 cut(s)	116
BstPAI	GACNNNNGTC	1 cut(s)	254
BstPI	GGTNACC	1 cut(s)	620
BstSCI	CCNGG	1 cut(s)	114
BstV1I	GCAGC	1 cut(s)	71
BstV2I	GAAGAC	1 cut(s)	142
Bsu15I	ATCGAT	1 cut(s)	708
BsuRI	GGCC	1 cut(s)	893
BsuTUI	ATCGAT	1 cut(s)	708
BtsCI	GGATG	3 cut(s)	32, 487, 574
BtsIMutI	CAGTG	4 cut(s)	219, 581, 757, 901
Cac8I	GCNNGC	2 cut(s)	55, 84
CfoI	GCGC	1 cut(s)	59
Cfr13I	GGNCC	1 cut(s)	795
ClaI	ATCGAT	1 cut(s)	708
CseI	GACGC	1 cut(s)	244
Csp6I	GTAC	1 cut(s)	325
CviAII	CATG	6 cut(s)	344, 650, 728, 804, 871, 883
CviJI	RGCY	8 cut(s)	62, 67, 102, 111, 309, 409, 893, 971
CviKI_1	RGCY	8 cut(s)	62, 67, 102, 111, 309, 409, 893, 971
CviQI	GTAC	1 cut(s)	325
DdeI	CTNAG	5 cut(s)	63, 107, 386, 739, 967
DpnI	GATC	3 cut(s)	264, 421, 962
DpnII	GATC	3 cut(s)	262, 419, 960
EciI	GGCGGA	1 cut(s)	557
Eco130I	CCWWGG	2 cut(s)	798, 888
Eco47I	GGWCC	1 cut(s)	795
Eco57I	CTGAAG	1 cut(s)	4
Eco88I	CYCGRG	1 cut(s)	537
Eco91I	GGTNACC	1 cut(s)	620
EcoO65I	GGTNACC	1 cut(s)	620
EcoRII	CCWGG	1 cut(s)	114
EcoT14I	CCWWGG	2 cut(s)	798, 888
ErhI	CCWWGG	2 cut(s)	798, 888
FaeI	CATG	6 cut(s)	347, 653, 731, 807, 874, 886
FaqI	GGGAC	1 cut(s)	156
FatI	CATG	6 cut(s)	343, 649, 727, 803, 870, 882
Fnu4HI	GCNGC	1 cut(s)	60
FokI	GGATG	3 cut(s)	39, 494, 581
Fsp4HI	GCNGC	1 cut(s)	60
FspI	TGCGCA	1 cut(s)	58
GlaI	GCGC	1 cut(s)	58
GluI	GCNGC	1 cut(s)	60
GsaI	CCCAGC	1 cut(s)	309
GsuI	CTGGAG	1 cut(s)	155
HaeIII	GGCC	1 cut(s)	893
HgaI	GACGC	1 cut(s)	244
HhaI	GCGC	1 cut(s)	59
Hin1I	GRCGYC	1 cut(s)	255
Hin1II	CATG	6 cut(s)	347, 653, 731, 807, 874, 886
Hin6I	GCGC	1 cut(s)	57
HinP1I	GCGC	1 cut(s)	57
HinfI	GANTC	7 cut(s)	278, 376, 532, 575, 755, 829, 965
HphI	GGTGA	6 cut(s)	236, 368, 614, 649, 824, 979
Hpy166II	GTNNAC	1 cut(s)	463
Hpy188I	TCNGA	4 cut(s)	125, 199, 389, 760
Hpy188III	TCNNGA	3 cut(s)	172, 562, 833
Hpy8I	GTNNAC	1 cut(s)	463
Hpy99I	CGWCG	2 cut(s)	260, 860
HpyAV	CCTTC	2 cut(s)	23, 559
HpyCH4III	ACNGT	1 cut(s)	401
HpyCH4IV	ACGT	2 cut(s)	73, 717
HpyCH4V	TGCA	3 cut(s)	437, 641, 908
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 108, 905
HpyF3I	CTNAG	5 cut(s)	63, 107, 386, 739, 967
HpySE526I	ACGT	2 cut(s)	73, 717
Hsp92I	GRCGYC	1 cut(s)	255
Hsp92II	CATG	6 cut(s)	347, 653, 731, 807, 874, 886
HspAI	GCGC	1 cut(s)	57
Kzo9I	GATC	3 cut(s)	262, 419, 960
LmnI	GCTCC	3 cut(s)	307, 505, 945
Lsp1109I	GCAGC	1 cut(s)	71
LweI	GCATC	2 cut(s)	17, 424
MaeII	ACGT	2 cut(s)	73, 717
MaeIII	GTNAC	5 cut(s)	36, 529, 620, 655, 670
MalI	GATC	3 cut(s)	264, 421, 962
MboI	GATC	3 cut(s)	262, 419, 960
MboII	GAAGA	4 cut(s)	147, 251, 671, 674
MfeI	CAATTG	2 cut(s)	371, 393
MhlI	GDGCHC	1 cut(s)	747
MluCI	AATT	8 cut(s)	183, 229, 371, 393, 449, 588, 609, 768
MlyI	GAGTC	4 cut(s)	385, 526, 838, 959
MmeI	TCCRAC	1 cut(s)	103
MnlI	CCTC	8 cut(s)	19, 41, 518, 546, 565, 782, 803, 829
MseI	TTAA	8 cut(s)	78, 182, 273, 311, 416, 635, 693, 997
MslI	CAYNNNNRTG	3 cut(s)	513, 651, 750
MspA1I	CMGCKG	1 cut(s)	62
MspCI	CTTAAG	2 cut(s)	415, 692
MspR9I	CCNGG	1 cut(s)	116
MunI	CAATTG	2 cut(s)	371, 393
MvaI	CCWGG	1 cut(s)	116
MwoI	GCNNNNNNNGC	3 cut(s)	59, 108, 905
NdeII	GATC	3 cut(s)	262, 419, 960
NlaIII	CATG	6 cut(s)	347, 653, 731, 807, 874, 886
NlaIV	GGNNCC	2 cut(s)	87, 796
NmuCI	GTSAC	4 cut(s)	36, 529, 620, 655
NsbI	TGCGCA	1 cut(s)	58
OliI	CACNNNNGTG	1 cut(s)	750
PcsI	WCGNNNNNNNCGW	1 cut(s)	714
PfeI	GAWTC	3 cut(s)	278, 575, 755
PflFI	GACNNNGTC	1 cut(s)	209
PflMI	CCANNNNNTGG	1 cut(s)	804
PkrI	GCNGC	1 cut(s)	61
PleI	GAGTC	4 cut(s)	384, 526, 837, 959
PpsI	GAGTC	4 cut(s)	384, 526, 837, 959
Ppu21I	YACGTR	1 cut(s)	718
PshAI	GACNNNNGTC	1 cut(s)	254
Psp1406I	AACGTT	1 cut(s)	73
Psp6I	CCWGG	1 cut(s)	114
PspEI	GGTNACC	1 cut(s)	620
PspFI	CCCAGC	1 cut(s)	305
PspGI	CCWGG	1 cut(s)	114
PspN4I	GGNNCC	2 cut(s)	87, 796
PspPI	GGNCC	1 cut(s)	795
PsyI	GACNNNGTC	1 cut(s)	209
PvuII	CAGCTG	1 cut(s)	62
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
RseI	CAYNNNNRTG	3 cut(s)	513, 651, 750
SaqAI	TTAA	8 cut(s)	78, 182, 273, 311, 416, 635, 693, 997
SatI	GCNGC	1 cut(s)	60
Sau3AI	GATC	3 cut(s)	262, 419, 960
Sau96I	GGNCC	1 cut(s)	795
SchI	GAGTC	4 cut(s)	385, 526, 838, 959
ScrFI	CCNGG	1 cut(s)	116
SduI	GDGCHC	1 cut(s)	747
SfaNI	GCATC	2 cut(s)	17, 424
SinI	GGWCC	1 cut(s)	795
SmiMI	CAYNNNNRTG	3 cut(s)	513, 651, 750
SmlI	CTYRAG	3 cut(s)	159, 415, 692
SmoI	CTYRAG	3 cut(s)	159, 415, 692
Sse9I	AATT	8 cut(s)	183, 229, 371, 393, 449, 588, 609, 768
SsiI	CCGC	1 cut(s)	542
SspI	AATATT	1 cut(s)	292
StyD4I	CCNGG	1 cut(s)	114
StyI	CCWWGG	2 cut(s)	798, 888
TaaI	ACNGT	1 cut(s)	401
TaiI	ACGT	2 cut(s)	76, 720
TaqI	TCGA	4 cut(s)	258, 363, 708, 963
TaqII	GACCGA	1 cut(s)	608
TasI	AATT	8 cut(s)	183, 229, 371, 393, 449, 588, 609, 768
TfiI	GAWTC	3 cut(s)	278, 575, 755
Tru1I	TTAA	8 cut(s)	78, 182, 273, 311, 416, 635, 693, 997
Tru9I	TTAA	8 cut(s)	78, 182, 273, 311, 416, 635, 693, 997
TscAI	CASTG	4 cut(s)	226, 588, 757, 901
TseFI	GTSAC	4 cut(s)	36, 529, 620, 655
TseI	GCWGC	1 cut(s)	59
Tsp45I	GTSAC	4 cut(s)	36, 529, 620, 655
TspDTI	ATGAA	2 cut(s)	415, 859
TspGWI	ACGGA	1 cut(s)	873
TspRI	CASTG	4 cut(s)	226, 588, 757, 901
Tth111I	GACNNNGTC	1 cut(s)	209
Van91I	CCANNNNNTGG	1 cut(s)	804
Vha464I	CTTAAG	2 cut(s)	415, 692
VpaK11BI	GGWCC	1 cut(s)	795
XapI	RAATTY	3 cut(s)	449, 588, 768

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.