Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008208

Physical Location & Seq

Genomic Coordinates Reverse (-)

31809447 .. 31812261

Gene Structure 2815 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G337500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1032 bp

ATGGCTTCTTTTTCTACTCGTGATTCCAAAACCATATTTTTCTTCTTTGGGTTGAGAGCAGCATGCCTGTCACTTTGTTTGGTTGGTTCTGTAGCTGAGCTTCAACGTTTTGAGCACCCACCAAAAGCAGATGGATCTCTTAGCTTCTTGGTTGTTGGAGATTGGGGAAGACGTGGACTCTACAACCAATCTCAAGTTGCTCTCCAGATGGGTCTAATTGGAGAGAAAGCAGAGATAGACTTTGTCATCTCTACCGGTGATAATTTCTATGAGGATGGTTTGACAGGCGTGGATGATCCAGCATTCAATGAGTCATTTTCCAACATCTATACTGCCCCTGGCCTAAATAAGCAATGGTACAATGTCTTGGGCAACCATGACTATCGGGGTGATGCTGAGGCACAACTGAGTCCCGTCCTCAGAACAATTGATAAGAGATGGCTTTGCTTAAGATCATTCATTGTAAATGCAGAAATCGTTGACTTTTTCTTTGTGGACACAACCCCATTTGTGGATGACTACTTTACAAATCCAAAGAACCATACCTATGATTGGAGGGGCGTCACTCCTCGGGAGGATTATCTTTCCAATCTCTTGAAGGATGTGGATTCAGCACTAAAAGATTCGAGTGCAAAATGGAAAATTGTAGTGGGTCACCATACAATTAAAAGTGCAGGACATCATGGTGTCACCCAAGAGCTTGTAACCCAACTTCTCCCAATCCTCAAGGCAAATAATATCGATTTTTATGTGAATGGACATGACCATTGCTTGGAGCACATCTCTGATACTCACAGTGAAATTAATTTCTTCACAAGCGGAGGTGGCTCTAAGGCATGGAGAGGTGATATAAAGTGGTGGAGTCCAGAGGAACTCAAGTTGTATTACGACGGCCAAGGTTTCATGTCAATCCAAATGACCAAGGCCTCTGCCGATATAGCGTTCTACGATGTCTTTGGCAATGTTCTGCATAAATGGAGCCTCTCCAAACACCTTCGCTCAGCCACGAACAGAACTTTCACCTATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko04142 ko04380 ko05323 map00740 map01100 map04142 map04380 map05323

Pfam Domains

Protein Families

Metallophos

Protein Analysis

344

Amino Acids

38.79

Weight (kDa)

5.78

Isoelectric Point (pI)

39.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01880
fragaria_vesca	FvH4_4g33012 FvH4_4g33012 FvH4_4g33012
malus_domestica	MD13G1016100.v1.1
prunus_persica	Prupe.1G337500_v2.0.a1 Prupe.1G337500_v2.0.a1 Prupe.1G337500_v2.0.a1
pyrus_communis	pycom13g01380
rosa_chinensis	RchiOBHm_Chr4g0442071
rosa_laevigata	RLG00000006043 RLG00000006044 RLG00000006047
rosa_multiflora	Rmu_sc0002501.1_g000007
rosa_roxburghii	Rroxscaffold_5G00382980
rosa_rugosa	Rorug04G0338600
rosa_samantha	Rh4AG390100 Rh4BG403500 Rh4BG403600 Rh4CG418600 Rh4CG418700 Rh4DG396700
rosa_wichuraiana	Rw4G033710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	772
AciI	CCGC	1 cut(s)	819
AclI	AACGTT	1 cut(s)	106
AclWI	GGATC	2 cut(s)	142, 290
AcoI	YGGCCR	1 cut(s)	892
AcyI	GRCGYC	1 cut(s)	561
AfaI	GTAC	1 cut(s)	359
AfiI	CCNNNNNNNGG	3 cut(s)	511, 552, 772
AflII	CTTAAG	1 cut(s)	448
AgeI	ACCGGT	1 cut(s)	254
AgsI	TTSAA	3 cut(s)	104, 307, 598
AjiI	CACGTC	1 cut(s)	173
AjnI	CCWGG	1 cut(s)	337
AluBI	AGCT	4 cut(s)	95, 100, 144, 700
AluI	AGCT	4 cut(s)	95, 100, 144, 700
Alw21I	GWGCWC	2 cut(s)	117, 780
AlwI	GGATC	2 cut(s)	142, 290
Ama87I	CYCGRG	1 cut(s)	570
AoxI	GGCC	3 cut(s)	340, 892, 924
ApeKI	GCWGC	1 cut(s)	59
ArsI	GACNNNNNNTTYG	2 cut(s)	473, 505
AseI	ATTAAT	1 cut(s)	804
AsiGI	ACCGGT	1 cut(s)	254
AsuHPI	GGTGA	6 cut(s)	269, 401, 647, 682, 857, 1012
AvaI	CYCGRG	1 cut(s)	570
BarI	GAAGNNNNNNTAC	4 cut(s)	84, 116, 696, 728
BauI	CACGAG	1 cut(s)	18
BbsI	GAAGAC	1 cut(s)	175
Bbv12I	GWGCWC	2 cut(s)	117, 780
BbvCI	CCTCAGC	1 cut(s)	396
BbvI	GCAGC	1 cut(s)	71
BccI	CCATC	4 cut(s)	125, 202, 269, 432
BceAI	ACGGC	1 cut(s)	907
BciT130I	CCWGG	1 cut(s)	339
BfmI	CTRYAG	1 cut(s)	90
BfrI	CTTAAG	1 cut(s)	448
BisI	GCNGC	1 cut(s)	60
BlpI	GCTNAGC	2 cut(s)	96, 1000
BlsI	GCNGC	1 cut(s)	61
Bme1390I	CCNGG	1 cut(s)	339
BmeT110I	CYCGRG	1 cut(s)	570
BmgBI	CACGTC	1 cut(s)	173
BmiI	GGNNCC	1 cut(s)	980
BmrFI	CCNGG	1 cut(s)	339
BmsI	GCATC	1 cut(s)	382
BpiI	GAAGAC	1 cut(s)	175
BplI	GAGNNNNNCTC	2 cut(s)	767, 799
BpmI	CTGGAG	1 cut(s)	188
Bpu10I	CCTNAGC	1 cut(s)	396
Bpu1102I	GCTNAGC	2 cut(s)	96, 1000
BpuEI	CTTGAG	3 cut(s)	177, 710, 860
Bsa29I	ATCGAT	1 cut(s)	741
BsaHI	GRCGYC	1 cut(s)	561
BsaJI	CCNNGG	4 cut(s)	337, 569, 895, 921
BsaWI	WCCGGW	1 cut(s)	254
Bsc4I	CCNNNNNNNGG	3 cut(s)	511, 552, 772
Bse118I	RCCGGY	1 cut(s)	254
Bse3DI	GCAATG	3 cut(s)	359, 766, 967
BseBI	CCWGG	1 cut(s)	339
BseCI	ATCGAT	1 cut(s)	741
BseDI	CCNNGG	4 cut(s)	337, 569, 895, 921
BseGI	GGATG	4 cut(s)	280, 298, 520, 607
BseLI	CCNNNNNNNGG	3 cut(s)	511, 552, 772
BseMI	GCAATG	3 cut(s)	359, 766, 967
BseMII	CTCAG	5 cut(s)	87, 387, 398, 433, 1014
BseRI	GAGGAG	1 cut(s)	558
BseXI	GCAGC	1 cut(s)	71
BsgI	GTGCAG	1 cut(s)	693
BshFI	GGCC	3 cut(s)	342, 894, 926
BshTI	ACCGGT	1 cut(s)	254
BshVI	ATCGAT	1 cut(s)	741
BsiHKAI	GWGCWC	2 cut(s)	117, 780
BsiHKCI	CYCGRG	1 cut(s)	570
BsiSI	CCGG	1 cut(s)	255
BslFI	GGGAC	1 cut(s)	396
BslI	CCNNNNNNNGG	3 cut(s)	511, 552, 772
BsmFI	GGGAC	1 cut(s)	396
BsmI	GAATGC	1 cut(s)	302
BsnI	GGCC	3 cut(s)	342, 894, 926
BsoBI	CYCGRG	1 cut(s)	570
Bsp1286I	GDGCHC	2 cut(s)	117, 780
Bsp143I	GATC	3 cut(s)	134, 295, 452
Bsp1720I	GCTNAGC	2 cut(s)	96, 1000
BspACI	CCGC	1 cut(s)	819
BspANI	GGCC	3 cut(s)	342, 894, 926
BspCNI	CTCAG	5 cut(s)	88, 388, 399, 432, 1013
BspDI	ATCGAT	1 cut(s)	741
BspLI	GGNNCC	1 cut(s)	980
BspPI	GGATC	2 cut(s)	142, 290
BspTI	CTTAAG	1 cut(s)	448
BsrDI	GCAATG	3 cut(s)	359, 766, 967
BsrFI	RCCGGY	1 cut(s)	254
BssAI	RCCGGY	1 cut(s)	254
BssECI	CCNNGG	4 cut(s)	337, 569, 895, 921
BssMI	GATC	3 cut(s)	134, 295, 452
BssNI	GRCGYC	1 cut(s)	561
BssSI	CACGAG	1 cut(s)	18
BssT1I	CCWWGG	2 cut(s)	895, 921
Bst2BI	CACGAG	1 cut(s)	18
Bst2UI	CCWGG	1 cut(s)	339
Bst4CI	ACNGT	1 cut(s)	797
BstACI	GRCGYC	1 cut(s)	561
BstAFI	CTTAAG	1 cut(s)	448
BstC8I	GCNNGC	1 cut(s)	64
BstDEI	CTNAG	7 cut(s)	96, 140, 396, 407, 419, 831, 1000
BstEII	GGTNACC	1 cut(s)	653
BstF5I	GGATG	4 cut(s)	280, 298, 520, 607
BstKTI	GATC	3 cut(s)	137, 298, 455
BstMBI	GATC	3 cut(s)	134, 295, 452
BstMWI	GCNNNNNNNGC	2 cut(s)	825, 938
BstNI	CCWGG	1 cut(s)	339
BstNSI	RCATGY	1 cut(s)	66
BstPI	GGTNACC	1 cut(s)	653
BstSCI	CCNGG	1 cut(s)	337
BstSFI	CTRYAG	1 cut(s)	90
BstV1I	GCAGC	1 cut(s)	71
BstV2I	GAAGAC	1 cut(s)	175
BstX2I	RGATCY	1 cut(s)	134
BstYI	RGATCY	1 cut(s)	134
Bsu15I	ATCGAT	1 cut(s)	741
BsuRI	GGCC	3 cut(s)	342, 894, 926
BsuTUI	ATCGAT	1 cut(s)	741
BtrI	CACGTC	1 cut(s)	173
BtsCI	GGATG	4 cut(s)	280, 298, 520, 607
BtsIMutI	CAGTG	1 cut(s)	802
Cac8I	GCNNGC	1 cut(s)	64
Cfr10I	RCCGGY	1 cut(s)	254
ClaI	ATCGAT	1 cut(s)	741
CseI	GACGC	1 cut(s)	550
Csp6I	GTAC	1 cut(s)	358
CspAI	ACCGGT	1 cut(s)	254
CviAII	CATG	6 cut(s)	63, 377, 683, 761, 837, 904
CviQI	GTAC	1 cut(s)	358
DdeI	CTNAG	7 cut(s)	96, 140, 396, 407, 419, 831, 1000
DpnI	GATC	3 cut(s)	136, 297, 454
DpnII	GATC	3 cut(s)	134, 295, 452
EaeI	YGGCCR	1 cut(s)	892
Eco130I	CCWWGG	2 cut(s)	895, 921
Eco147I	AGGCCT	1 cut(s)	926
Eco88I	CYCGRG	1 cut(s)	570
Eco91I	GGTNACC	1 cut(s)	653
EcoO65I	GGTNACC	1 cut(s)	653
EcoRII	CCWGG	1 cut(s)	337
EcoT14I	CCWWGG	2 cut(s)	895, 921
ErhI	CCWWGG	2 cut(s)	895, 921
FaeI	CATG	6 cut(s)	66, 380, 686, 764, 840, 907
FaqI	GGGAC	1 cut(s)	396
FatI	CATG	6 cut(s)	62, 376, 682, 760, 836, 903
Fnu4HI	GCNGC	1 cut(s)	60
FokI	GGATG	4 cut(s)	287, 305, 527, 614
Fsp4HI	GCNGC	1 cut(s)	60
GluI	GCNGC	1 cut(s)	60
GsuI	CTGGAG	1 cut(s)	188
HaeIII	GGCC	3 cut(s)	342, 894, 926
HapII	CCGG	1 cut(s)	255
HgaI	GACGC	1 cut(s)	550
Hin1I	GRCGYC	1 cut(s)	561
Hin1II	CATG	6 cut(s)	66, 380, 686, 764, 840, 907
HincII	GTYRAC	1 cut(s)	481
HindII	GTYRAC	1 cut(s)	481
HinfI	GANTC	7 cut(s)	23, 177, 311, 409, 608, 623, 862
HpaII	CCGG	1 cut(s)	255
HphI	GGTGA	6 cut(s)	269, 401, 647, 682, 857, 1012
Hpy166II	GTNNAC	3 cut(s)	176, 481, 496
Hpy188I	TCNGA	2 cut(s)	422, 787
Hpy188III	TCNNGA	5 cut(s)	20, 205, 572, 595, 866
Hpy8I	GTNNAC	3 cut(s)	176, 481, 496
Hpy99I	CGWCG	1 cut(s)	893
HpyAV	CCTTC	2 cut(s)	592, 1004
HpyCH4III	ACNGT	1 cut(s)	797
HpyCH4IV	ACGT	2 cut(s)	106, 172
HpyCH4V	TGCA	4 cut(s)	470, 632, 674, 970
HpyF10VI	GCNNNNNNNGC	2 cut(s)	825, 938
HpyF3I	CTNAG	7 cut(s)	96, 140, 396, 407, 419, 831, 1000
HpySE526I	ACGT	2 cut(s)	106, 172
Hsp92I	GRCGYC	1 cut(s)	561
Hsp92II	CATG	6 cut(s)	66, 380, 686, 764, 840, 907
Kzo9I	GATC	3 cut(s)	134, 295, 452
LmnI	GCTCC	2 cut(s)	775, 978
LpnPI	CCDG	9 cut(s)	80, 218, 268, 270, 312, 324, 351, 660, 879
Lsp1109I	GCAGC	1 cut(s)	71
LweI	GCATC	1 cut(s)	382
MaeII	ACGT	2 cut(s)	106, 172
MaeIII	GTNAC	5 cut(s)	69, 562, 653, 688, 703
MalI	GATC	3 cut(s)	136, 297, 454
MboI	GATC	3 cut(s)	134, 295, 452
MboII	GAAGA	3 cut(s)	34, 180, 802
MfeI	CAATTG	1 cut(s)	426
MflI	RGATCY	1 cut(s)	134
MhlI	GDGCHC	2 cut(s)	117, 780
MluCI	AATT	7 cut(s)	216, 262, 426, 642, 663, 801, 805
MlyI	GAGTC	4 cut(s)	171, 320, 418, 871
MmeI	TCCRAC	2 cut(s)	136, 345
MseI	TTAA	3 cut(s)	449, 666, 804
MslI	CAYNNNNRTG	2 cut(s)	546, 684
MspCI	CTTAAG	1 cut(s)	448
MspI	CCGG	1 cut(s)	255
MspR9I	CCNGG	1 cut(s)	339
MunI	CAATTG	1 cut(s)	426
Mva1269I	GAATGC	1 cut(s)	302
MvaI	CCWGG	1 cut(s)	339
MwoI	GCNNNNNNNGC	2 cut(s)	825, 938
NdeII	GATC	3 cut(s)	134, 295, 452
NlaIII	CATG	6 cut(s)	66, 380, 686, 764, 840, 907
NlaIV	GGNNCC	1 cut(s)	980
NmuCI	GTSAC	4 cut(s)	69, 562, 653, 688
NspI	RCATGY	1 cut(s)	66
PaeI	GCATGC	1 cut(s)	66
PceI	AGGCCT	1 cut(s)	926
PctI	GAATGC	1 cut(s)	302
PfeI	GAWTC	3 cut(s)	23, 608, 623
PflFI	GACNNNGTC	1 cut(s)	242
PflMI	CCANNNNNTGG	1 cut(s)	772
PinAI	ACCGGT	1 cut(s)	254
PkrI	GCNGC	1 cut(s)	61
PleI	GAGTC	4 cut(s)	171, 319, 417, 870
PpsI	GAGTC	4 cut(s)	171, 319, 417, 870
PshBI	ATTAAT	1 cut(s)	804
Psp1406I	AACGTT	1 cut(s)	106
Psp6I	CCWGG	1 cut(s)	337
PspEI	GGTNACC	1 cut(s)	653
PspGI	CCWGG	1 cut(s)	337
PspN4I	GGNNCC	1 cut(s)	980
PsuI	RGATCY	1 cut(s)	134
PsyI	GACNNNGTC	1 cut(s)	242
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
RseI	CAYNNNNRTG	2 cut(s)	546, 684
SaqAI	TTAA	3 cut(s)	449, 666, 804
SatI	GCNGC	1 cut(s)	60
Sau3AI	GATC	3 cut(s)	134, 295, 452
SchI	GAGTC	4 cut(s)	171, 320, 418, 871
ScrFI	CCNGG	1 cut(s)	339
SduI	GDGCHC	2 cut(s)	117, 780
SfaNI	GCATC	1 cut(s)	382
SfcI	CTRYAG	1 cut(s)	90
SmiMI	CAYNNNNRTG	2 cut(s)	546, 684
SmlI	CTYRAG	4 cut(s)	192, 448, 725, 875
SmoI	CTYRAG	4 cut(s)	192, 448, 725, 875
SphI	GCATGC	1 cut(s)	66
Sse9I	AATT	7 cut(s)	216, 262, 426, 642, 663, 801, 805
SseBI	AGGCCT	1 cut(s)	926
SsiI	CCGC	1 cut(s)	819
StuI	AGGCCT	1 cut(s)	926
StyD4I	CCNGG	1 cut(s)	337
StyI	CCWWGG	2 cut(s)	895, 921
TaaI	ACNGT	1 cut(s)	797
TaiI	ACGT	2 cut(s)	109, 175
TaqI	TCGA	2 cut(s)	626, 741
TasI	AATT	7 cut(s)	216, 262, 426, 642, 663, 801, 805
TfiI	GAWTC	3 cut(s)	23, 608, 623
Tru1I	TTAA	3 cut(s)	449, 666, 804
Tru9I	TTAA	3 cut(s)	449, 666, 804
TscAI	CASTG	1 cut(s)	802
TseFI	GTSAC	4 cut(s)	69, 562, 653, 688
TseI	GCWGC	1 cut(s)	59
Tsp45I	GTSAC	4 cut(s)	69, 562, 653, 688
TspDTI	ATGAA	2 cut(s)	448, 892
TspRI	CASTG	1 cut(s)	802
Tth111I	GACNNNGTC	1 cut(s)	242
Van91I	CCANNNNNTGG	1 cut(s)	772
Vha464I	CTTAAG	1 cut(s)	448
VspI	ATTAAT	1 cut(s)	804
XceI	RCATGY	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.