Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008208

Physical Location & Seq

Genomic Coordinates Forward (+)

63779360 .. 63783482

Gene Structure 4123 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ40984

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGTCAGAAGACGCACACTTTGTCATCTCGACTGGAGACAACTTTTACGAAGATGGTGTGACAGGGAACGATGATCCAGCCTTTAATGAATCATTTTTCAACATCTATACTGCCCCAAGATTACAGACAGTATATTACCTTGCTATATATTCAGCAAATTCCATCAACCTCATGGCTTCTTTGTACTCTTCTAATTCCAACAGAACCATGCAGCGTTTCTCATTTCCTCAATTCTTGATCCTCACGGCTTGCCTCTCACTTTGTTTGGTTGCTAAAGCTGATCTTCAACCTTTTCAACAGCAAGCAAATGCAGATGGGTCTCTGAGTTTCTTGGTCGTTGGAGATTGGGGAAGACGAGGACTCTACAACCAATCTAAAGTCGCTACCCAGATGGGAATAATTGGAGAGAAAGCACAGACAAACTTCGTCATCTCCACCGGCGACAATTTCTACGATGATGGCTTGACAGGGCCGGATGATCCAGCCTTCAATGAGTCATTTTCCAACATATACACTGCCCCAAGCTTACATATACCTTGGTACATTGCAATCGCAGAGTTTTTCTTCGTGGACACAACCCCATTTGTGGATGACTACTTTACAAATCCAAAGGAGCATGTCTATGACTGGAGAGGTGTGCTTCCTCGAGAGGATTACCTTCCAAAACTCCTGAAGGCAAACAAAATAGATTTTTATATAAACGGACATGACCATTGCTTGCAACACATCAGTGATCCGGACAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko04142 ko04380 ko05323 map00740 map01100 map04142 map04380 map05323

Pfam Domains

Protein Families

Metallophos

Protein Analysis

248

Amino Acids

28.08

Weight (kDa)

4.53

Isoelectric Point (pI)

38.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008208)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01880
fragaria_vesca	FvH4_4g33012 FvH4_4g33012 FvH4_4g33012
malus_domestica	MD13G1016100.v1.1
prunus_persica	Prupe.1G337500_v2.0.a1 Prupe.1G337500_v2.0.a1 Prupe.1G337500_v2.0.a1
pyrus_communis	pycom13g01380
rosa_chinensis	RchiOBHm_Chr4g0442071
rosa_laevigata	RLG00000006043 RLG00000006044 RLG00000006047
rosa_multiflora	Rmu_sc0002501.1_g000007
rosa_roxburghii	Rroxscaffold_5G00382980
rosa_rugosa	Rorug04G0338600
rosa_samantha	Rh4AG390100 Rh4BG403500 Rh4BG403600 Rh4CG418600 Rh4CG418700 Rh4DG396700
rosa_wichuraiana	Rw4G033710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	736
AclWI	GGATC	4 cut(s)	68, 232, 473, 728
AcsI	RAATTY	1 cut(s)	157
AcuI	CTGAAG	1 cut(s)	692
AfaI	GTAC	2 cut(s)	185, 542
AfiI	CCNNNNNNNGG	1 cut(s)	586
AgsI	TTSAA	4 cut(s)	100, 287, 296, 490
AleI	CACNNNNGTG	1 cut(s)	729
AluBI	AGCT	2 cut(s)	278, 525
AluI	AGCT	2 cut(s)	278, 525
Alw26I	GTCTC	2 cut(s)	30, 324
AlwI	GGATC	4 cut(s)	68, 232, 473, 728
Ama87I	CYCGRG	1 cut(s)	645
Aor13HI	TCCGGA	1 cut(s)	736
AoxI	GGCC	1 cut(s)	470
ApeKI	GCWGC	1 cut(s)	211
ApoI	RAATTY	1 cut(s)	157
ArsI	GACNNNNNNTTYG	1 cut(s)	34
AspS9I	GGNCC	1 cut(s)	470
AvaI	CYCGRG	1 cut(s)	645
BbsI	GAAGAC	2 cut(s)	15, 358
BbvI	GCAGC	1 cut(s)	223
BccI	CCATC	5 cut(s)	47, 170, 308, 385, 452
BceAI	ACGGC	1 cut(s)	261
BcoDI	GTCTC	2 cut(s)	30, 324
BisI	GCNGC	1 cut(s)	212
BlsI	GCNGC	1 cut(s)	213
BmeT110I	CYCGRG	1 cut(s)	645
BmgT120I	GGNCC	1 cut(s)	470
BpiI	GAAGAC	2 cut(s)	15, 358
BpmI	CTGGAG	2 cut(s)	54, 649
BsaI	GGTCTC	1 cut(s)	324
BsaJI	CCNNGG	1 cut(s)	536
BsaWI	WCCGGW	1 cut(s)	736
Bsc4I	CCNNNNNNNGG	1 cut(s)	586
Bse118I	RCCGGY	1 cut(s)	437
Bse1I	ACTGG	2 cut(s)	37, 632
Bse3DI	GCAATG	2 cut(s)	543, 712
BseAI	TCCGGA	1 cut(s)	736
BseDI	CCNNGG	1 cut(s)	536
BseGI	GGATG	2 cut(s)	481, 595
BseLI	CCNNNNNNNGG	1 cut(s)	586
BseMI	GCAATG	2 cut(s)	543, 712
BseMII	CTCAG	1 cut(s)	314
BseNI	ACTGG	2 cut(s)	37, 632
BseXI	GCAGC	1 cut(s)	223
BshFI	GGCC	1 cut(s)	472
BsiHKCI	CYCGRG	1 cut(s)	645
BsiSI	CCGG	3 cut(s)	438, 473, 737
BslI	CCNNNNNNNGG	1 cut(s)	586
BsmAI	GTCTC	2 cut(s)	30, 324
BsnI	GGCC	1 cut(s)	472
Bso31I	GGTCTC	1 cut(s)	324
BsoBI	CYCGRG	1 cut(s)	645
Bsp13I	TCCGGA	1 cut(s)	736
Bsp143I	GATC	5 cut(s)	73, 237, 280, 478, 733
BspANI	GGCC	1 cut(s)	472
BspCNI	CTCAG	1 cut(s)	315
BspEI	TCCGGA	1 cut(s)	736
BspPI	GGATC	4 cut(s)	68, 232, 473, 728
BspTNI	GGTCTC	1 cut(s)	324
BsrDI	GCAATG	2 cut(s)	543, 712
BsrFI	RCCGGY	1 cut(s)	437
BsrI	ACTGG	2 cut(s)	37, 632
BssAI	RCCGGY	1 cut(s)	437
BssECI	CCNNGG	1 cut(s)	536
BssMI	GATC	5 cut(s)	73, 237, 280, 478, 733
BssT1I	CCWWGG	1 cut(s)	536
Bst4CI	ACNGT	1 cut(s)	130
Bst6I	CTCTTC	1 cut(s)	193
BstC8I	GCNNGC	3 cut(s)	250, 303, 719
BstDEI	CTNAG	1 cut(s)	323
BstF5I	GGATG	2 cut(s)	481, 595
BstKTI	GATC	5 cut(s)	76, 240, 283, 481, 736
BstMAI	GTCTC	2 cut(s)	30, 324
BstMBI	GATC	5 cut(s)	73, 237, 280, 478, 733
BstNSI	RCATGY	1 cut(s)	620
BstV1I	GCAGC	1 cut(s)	223
BstV2I	GAAGAC	2 cut(s)	15, 358
BsuRI	GGCC	1 cut(s)	472
BtsCI	GGATG	2 cut(s)	481, 595
BtsI	GCAGTG	1 cut(s)	513
BtsIMutI	CAGTG	2 cut(s)	513, 736
Cac8I	GCNNGC	3 cut(s)	250, 303, 719
Cfr10I	RCCGGY	1 cut(s)	437
Cfr13I	GGNCC	1 cut(s)	470
CseI	GACGC	1 cut(s)	20
Csp6I	GTAC	2 cut(s)	184, 541
CviAII	CATG	4 cut(s)	172, 208, 617, 707
CviJI	RGCY	8 cut(s)	80, 176, 248, 278, 462, 472, 485, 525
CviKI_1	RGCY	8 cut(s)	80, 176, 248, 278, 462, 472, 485, 525
CviQI	GTAC	2 cut(s)	184, 541
DdeI	CTNAG	1 cut(s)	323
DpnI	GATC	5 cut(s)	75, 239, 282, 480, 735
DpnII	GATC	5 cut(s)	73, 237, 280, 478, 733
Eam1104I	CTCTTC	1 cut(s)	193
EarI	CTCTTC	1 cut(s)	193
Eco130I	CCWWGG	1 cut(s)	536
Eco31I	GGTCTC	1 cut(s)	324
Eco57I	CTGAAG	1 cut(s)	692
Eco88I	CYCGRG	1 cut(s)	645
EcoT14I	CCWWGG	1 cut(s)	536
ErhI	CCWWGG	1 cut(s)	536
FaeI	CATG	4 cut(s)	175, 211, 620, 710
FalI	AAGNNNNNCTT	2 cut(s)	267, 299
FatI	CATG	4 cut(s)	171, 207, 616, 706
Fnu4HI	GCNGC	1 cut(s)	212
FokI	GGATG	2 cut(s)	488, 602
Fsp4HI	GCNGC	1 cut(s)	212
GluI	GCNGC	1 cut(s)	212
GsuI	CTGGAG	2 cut(s)	54, 649
HaeIII	GGCC	1 cut(s)	472
HapII	CCGG	3 cut(s)	438, 473, 737
HgaI	GACGC	1 cut(s)	20
Hin1II	CATG	4 cut(s)	175, 211, 620, 710
HindIII	AAGCTT	1 cut(s)	523
HinfI	GANTC	3 cut(s)	89, 360, 494
HpaII	CCGG	3 cut(s)	438, 473, 737
Hpy166II	GTNNAC	1 cut(s)	571
Hpy188I	TCNGA	2 cut(s)	7, 324
Hpy188III	TCNNGA	5 cut(s)	28, 235, 647, 670, 737
Hpy8I	GTNNAC	1 cut(s)	571
HpyAV	CCTTC	3 cut(s)	496, 667, 668
HpyCH4III	ACNGT	1 cut(s)	130
HpyCH4V	TGCA	4 cut(s)	211, 311, 548, 721
HpyF3I	CTNAG	1 cut(s)	323
Hsp92II	CATG	4 cut(s)	175, 211, 620, 710
Kpn2I	TCCGGA	1 cut(s)	736
Kzo9I	GATC	5 cut(s)	73, 237, 280, 478, 733
LmnI	GCTCC	1 cut(s)	613
Lsp1109I	GCAGC	1 cut(s)	223
MaeIII	GTNAC	1 cut(s)	58
MalI	GATC	5 cut(s)	75, 239, 282, 480, 735
MboI	GATC	5 cut(s)	73, 237, 280, 478, 733
MboII	GAAGA	6 cut(s)	20, 62, 180, 275, 363, 556
MluCI	AATT	5 cut(s)	157, 193, 230, 399, 445
MlyI	GAGTC	2 cut(s)	354, 503
MmeI	TCCRAC	3 cut(s)	222, 319, 528
MnlI	CCTC	8 cut(s)	179, 237, 251, 263, 350, 626, 643, 654
MroI	TCCGGA	1 cut(s)	736
MseI	TTAA	1 cut(s)	84
MslI	CAYNNNNRTG	2 cut(s)	621, 729
MspI	CCGG	3 cut(s)	438, 473, 737
NdeII	GATC	5 cut(s)	73, 237, 280, 478, 733
NlaIII	CATG	4 cut(s)	175, 211, 620, 710
NmuCI	GTSAC	1 cut(s)	58
NspI	RCATGY	1 cut(s)	620
OliI	CACNNNNGTG	1 cut(s)	729
PaeR7I	CTCGAG	1 cut(s)	645
PfeI	GAWTC	1 cut(s)	89
PkrI	GCNGC	1 cut(s)	213
PleI	GAGTC	2 cut(s)	354, 502
PpsI	GAGTC	2 cut(s)	354, 502
PspPI	GGNCC	1 cut(s)	470
RsaI	GTAC	2 cut(s)	185, 542
RsaNI	GTAC	2 cut(s)	184, 541
RseI	CAYNNNNRTG	2 cut(s)	621, 729
SaqAI	TTAA	1 cut(s)	84
SatI	GCNGC	1 cut(s)	212
Sau3AI	GATC	5 cut(s)	73, 237, 280, 478, 733
Sau96I	GGNCC	1 cut(s)	470
SchI	GAGTC	2 cut(s)	354, 503
SetI	ASST	9 cut(s)	141, 171, 280, 292, 527, 538, 637, 660, 746
Sfr274I	CTCGAG	1 cut(s)	645
SgrAI	CRCCGGYG	1 cut(s)	437
SlaI	CTCGAG	1 cut(s)	645
SmiMI	CAYNNNNRTG	2 cut(s)	621, 729
SmlI	CTYRAG	1 cut(s)	645
SmoI	CTYRAG	1 cut(s)	645
Sse9I	AATT	5 cut(s)	157, 193, 230, 399, 445
StyI	CCWWGG	1 cut(s)	536
TaaI	ACNGT	1 cut(s)	130
TaqI	TCGA	2 cut(s)	29, 646
TasI	AATT	5 cut(s)	157, 193, 230, 399, 445
TatI	WGTACW	1 cut(s)	183
TfiI	GAWTC	1 cut(s)	89
Tru1I	TTAA	1 cut(s)	84
Tru9I	TTAA	1 cut(s)	84
TscAI	CASTG	2 cut(s)	520, 736
TseFI	GTSAC	1 cut(s)	58
TseI	GCWGC	1 cut(s)	211
Tsp45I	GTSAC	1 cut(s)	58
TspDTI	ATGAA	1 cut(s)	102
TspGWI	ACGGA	1 cut(s)	717
TspRI	CASTG	2 cut(s)	520, 736
XapI	RAATTY	1 cut(s)	157
XceI	RCATGY	1 cut(s)	620
XcmI	CCANNNNNNNNNTGG	1 cut(s)	169
XhoI	CTCGAG	1 cut(s)	645

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.