AT2G03510

prohibitin homologues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0007435
Physical Location & Seq
Forward (+)
1066578 .. 1069186
2609 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G03510.1

Sequence Viewer

Length: 1071 bp
ATGGATGCTCAACAACGGAGAACTGATATTCCTCGAGCACCACCGGTCGGAGAACCCGGTGGCGATATATCTTCGATTCTCATTGCTTTCGGTGTTTTCGCTGCAATCGCCGCCTTGGTTATGTTTCCCTCATCGTTGGTGCACCAAGTTCCTGAAGGTCACGTTGGAGCGTATTGGAGAGGTGGTGCTCTTCTAAATATAATCACAGAGCCAGGTTTTCATCTGAAGCTGCCTTTCATAACCAACTATGAGCCTGTTCAAGTTACTCTACAGACAGATCAAGTGAGGGATATACCATGTGGTACCAAAGGAGGTGTCTTGATTACCTTTGAGAAGATAGAAGTTGTTAATCGACTACGTAAGGATTTTGTTTATGACACTTTGCTTAACTATGGTGTGAACTATGATAACACATGGATTTATGACAAGATTCATCATGAGATCAACCAGTTCTGTAGCTCTCATTCACTTCAGCAAGTCTACATTGACATCTTTGACCAGATTGATGAACGAATGAAAGATGCTCTTCAAGCTGATTGTACACGTTATGCTCCAGGAATTGAGATTCTTAGTGTGCGTGTCACCAAGCCGAAAATTCCAGAGAGTGTAAGGCGTAACTTTGAGCAAATGGAAGAGGAACGTACCAAGGTCTTGATTGCTATTGAGAAACAAAGAGTTGCTGAGAAAGAGGCAGAGACAAAGAAAATAATGGCCATTAGTGAAGCTGAGAAGAACGCCAATGTAAGCAAGATTCTGATGCAACAGAAGTTGACTGAGAAAGACAGTTCAAGGAGAGAAGCTGATATCGAGAATCAGATGTACCTTGACCGTCAAAAGAGTCTCGCGGATGCAGATTACTACCGTGTACTGAGAGAAGCTGAAGCAAATAAGTTGAAGCTCACCCCTGAATTTCTTGAACTCAAATTCATCGATGCCATTGCTCGTAACACCAAAATATTCTTCGGGGACAAGGTACCTAACATGGTGTTGGATCAAAGGCTGCTTGGGAATTTCCTCAATCATTCGACAAAAGACAAAGATGGAAGCTTGGAAATGGCCACTGATACATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7

Protein Analysis

356

Amino Acids

40.6

Weight (kDa)

5.65

Isoelectric Point (pI)

39.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 49 - 231 1.3e-26 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 2 cut(s) 302, 973
AccB1I GGYRCC 2 cut(s) 302, 973
AccI GTMKAC 1 cut(s) 480
AccII CGCG 1 cut(s) 845
AciI CCGC 2 cut(s) 111, 845
AclWI GGATC 1 cut(s) 999
AcoI YGGCCR 2 cut(s) 711, 1056
AcsI RAATTY 4 cut(s) 594, 908, 923, 1009
AcuI CTGAAG 4 cut(s) 174, 245, 455, 900
AfaI GTAC 6 cut(s) 304, 541, 643, 821, 867, 975
AfiI CCNNNNNNNGG 1 cut(s) 47
AflIII ACRYGT 1 cut(s) 542
AgeI ACCGGT 1 cut(s) 43
AgsI TTSAA 5 cut(s) 260, 530, 789, 895, 917
AjnI CCWGG 2 cut(s) 211, 553
AjuI GAANNNNNNNTTGG 4 cut(s) 147, 179, 944, 976
AloI GAACNNNNNNTCC 2 cut(s) 13, 45
AluBI AGCT 8 cut(s) 229, 459, 533, 725, 800, 878, 898, 1047
AluI AGCT 8 cut(s) 229, 459, 533, 725, 800, 878, 898, 1047
Alw21I GWGCWC 3 cut(s) 40, 144, 190
Alw26I GTCTC 2 cut(s) 689, 845
Alw44I GTGCAC 1 cut(s) 140
AlwI GGATC 1 cut(s) 999
Ama87I CYCGRG 1 cut(s) 33
AoxI GGCC 2 cut(s) 711, 1056
ApaLI GTGCAC 1 cut(s) 140
ApeKI GCWGC 3 cut(s) 101, 229, 1000
ApoI RAATTY 4 cut(s) 594, 908, 923, 1009
ArsI GACNNNNNNTTYG 2 cut(s) 300, 332
AsiGI ACCGGT 1 cut(s) 43
Asp718I GGTACC 2 cut(s) 302, 973
AsuC2I CCSGG 1 cut(s) 57
AsuHPI GGTGA 2 cut(s) 574, 892
AvaI CYCGRG 1 cut(s) 33
BaeGI GKGCMC 1 cut(s) 144
BalI TGGCCA 2 cut(s) 713, 1058
BanI GGYRCC 2 cut(s) 302, 973
Bbv12I GWGCWC 3 cut(s) 40, 144, 190
BbvI GCAGC 3 cut(s) 88, 216, 987
BccI CCATC 1 cut(s) 1034
BcgI CGANNNNNNTGC 2 cut(s) 920, 954
BciT130I CCWGG 2 cut(s) 213, 555
BcnI CCSGG 1 cut(s) 57
BcoDI GTCTC 2 cut(s) 689, 845
BfmI CTRYAG 2 cut(s) 269, 454
BisI GCNGC 4 cut(s) 102, 111, 230, 1001
BlsI GCNGC 4 cut(s) 103, 112, 231, 1002
Bme1390I CCNGG 3 cut(s) 57, 213, 555
BmeT110I CYCGRG 1 cut(s) 33
BmiI GGNNCC 2 cut(s) 304, 975
BmrFI CCNGG 3 cut(s) 57, 213, 555
BmsI GCATC 4 cut(s) 511, 747, 838, 922
BpmI CTGGAG 1 cut(s) 537
BpuMI CCSGG 1 cut(s) 57
Bsa29I ATCGAT 1 cut(s) 930
BsaAI YACGTR 1 cut(s) 359
BsaJI CCNNGG 2 cut(s) 114, 645
BsaWI WCCGGW 1 cut(s) 43
BsaXI ACNNNNNCTCC 2 cut(s) 169, 199
Bsc4I CCNNNNNNNGG 1 cut(s) 47
Bse118I RCCGGY 1 cut(s) 43
Bse1I ACTGG 1 cut(s) 448
Bse3DI GCAATG 2 cut(s) 81, 936
BseBI CCWGG 2 cut(s) 213, 555
BseCI ATCGAT 1 cut(s) 930
BseDI CCNNGG 2 cut(s) 114, 645
BseGI GGATG 2 cut(s) 10, 853
BseLI CCNNNNNNNGG 1 cut(s) 47
BseMI GCAATG 2 cut(s) 81, 936
BseMII CTCAG 4 cut(s) 672, 717, 765, 860
BseNI ACTGG 1 cut(s) 448
BseSI GKGCMC 1 cut(s) 144
BseXI GCAGC 3 cut(s) 88, 216, 987
Bsh1236I CGCG 1 cut(s) 845
Bsh1285I CGRYCG 1 cut(s) 48
BshFI GGCC 2 cut(s) 713, 1058
BshNI GGYRCC 2 cut(s) 302, 973
BshTI ACCGGT 1 cut(s) 43
BshVI ATCGAT 1 cut(s) 930
BsiEI CGRYCG 1 cut(s) 48
BsiHKAI GWGCWC 3 cut(s) 40, 144, 190
BsiHKCI CYCGRG 1 cut(s) 33
BsiSI CCGG 2 cut(s) 44, 57
BslFI GGGAC 1 cut(s) 980
BslI CCNNNNNNNGG 1 cut(s) 47
BsmAI GTCTC 2 cut(s) 689, 845
BsmFI GGGAC 1 cut(s) 980
BsnI GGCC 2 cut(s) 713, 1058
BsoBI CYCGRG 1 cut(s) 33
Bsp1286I GDGCHC 3 cut(s) 40, 144, 190
Bsp1407I TGTACA 1 cut(s) 539
Bsp143I GATC 3 cut(s) 277, 441, 991
BspACI CCGC 2 cut(s) 111, 845
BspANI GGCC 2 cut(s) 713, 1058
BspCNI CTCAG 4 cut(s) 673, 718, 766, 861
BspDI ATCGAT 1 cut(s) 930
BspFNI CGCG 1 cut(s) 845
BspHI TCATGA 1 cut(s) 436
BspLI GGNNCC 2 cut(s) 304, 975
BspPI GGATC 1 cut(s) 999
BspQI GCTCTTC 2 cut(s) 195, 531
BspT107I GGYRCC 2 cut(s) 302, 973
BsrDI GCAATG 2 cut(s) 81, 936
BsrFI RCCGGY 1 cut(s) 43
BsrGI TGTACA 1 cut(s) 539
BsrI ACTGG 1 cut(s) 448
BssAI RCCGGY 1 cut(s) 43
BssECI CCNNGG 2 cut(s) 114, 645
BssMI GATC 3 cut(s) 277, 441, 991
BssT1I CCWWGG 2 cut(s) 114, 645
Bst2UI CCWGG 2 cut(s) 213, 555
Bst4CI ACNGT 3 cut(s) 785, 830, 863
Bst6I CTCTTC 3 cut(s) 195, 531, 627
BstAUI TGTACA 1 cut(s) 539
BstBAI YACGTR 1 cut(s) 359
BstDEI CTNAG 5 cut(s) 569, 681, 726, 774, 869
BstF5I GGATG 2 cut(s) 10, 853
BstFNI CGCG 1 cut(s) 845
BstKTI GATC 3 cut(s) 280, 444, 994
BstMAI GTCTC 2 cut(s) 689, 845
BstMBI GATC 3 cut(s) 277, 441, 991
BstMCI CGRYCG 1 cut(s) 48
BstMWI GCNNNNNNNGC 3 cut(s) 107, 110, 530
BstNI CCWGG 2 cut(s) 213, 555
BstSCI CCNGG 3 cut(s) 55, 211, 553
BstSFI CTRYAG 2 cut(s) 269, 454
BstSLI GKGCMC 1 cut(s) 144
BstSNI TACGTA 1 cut(s) 359
BstUI CGCG 1 cut(s) 845
BstV1I GCAGC 3 cut(s) 88, 216, 987
Bsu15I ATCGAT 1 cut(s) 930
BsuRI GGCC 2 cut(s) 713, 1058
BsuTUI ATCGAT 1 cut(s) 930
BtsCI GGATG 2 cut(s) 10, 853
BtsIMutI CAGTG 1 cut(s) 1059
CciI TCATGA 1 cut(s) 436
Cfr10I RCCGGY 1 cut(s) 43
ClaI ATCGAT 1 cut(s) 930
Csp6I GTAC 6 cut(s) 303, 540, 642, 820, 866, 974
CspAI ACCGGT 1 cut(s) 43
CviAII CATG 4 cut(s) 297, 414, 437, 982
CviQI GTAC 6 cut(s) 303, 540, 642, 820, 866, 974
DdeI CTNAG 5 cut(s) 569, 681, 726, 774, 869
DpnI GATC 3 cut(s) 279, 443, 993
DpnII GATC 3 cut(s) 277, 441, 991
EaeI YGGCCR 2 cut(s) 711, 1056
Eam1104I CTCTTC 3 cut(s) 195, 531, 627
EarI CTCTTC 3 cut(s) 195, 531, 627
Eco105I TACGTA 1 cut(s) 359
Eco130I CCWWGG 2 cut(s) 114, 645
Eco32I GATATC 1 cut(s) 805
Eco57I CTGAAG 4 cut(s) 174, 245, 455, 900
Eco88I CYCGRG 1 cut(s) 33
EcoRII CCWGG 2 cut(s) 211, 553
EcoRV GATATC 1 cut(s) 805
EcoT14I CCWWGG 2 cut(s) 114, 645
ErhI CCWWGG 2 cut(s) 114, 645
FaeI CATG 4 cut(s) 300, 417, 440, 985
FalI AAGNNNNNCTT 2 cut(s) 510, 542
FaqI GGGAC 1 cut(s) 980
FatI CATG 4 cut(s) 296, 413, 436, 981
FblI GTMKAC 1 cut(s) 480
Fnu4HI GCNGC 4 cut(s) 102, 111, 230, 1001
FokI GGATG 2 cut(s) 17, 860
Fsp4HI GCNGC 4 cut(s) 102, 111, 230, 1001
GluI GCNGC 4 cut(s) 102, 111, 230, 1001
GsuI CTGGAG 1 cut(s) 537
HaeIII GGCC 2 cut(s) 713, 1058
HapII CCGG 2 cut(s) 44, 57
Hin1II CATG 4 cut(s) 300, 417, 440, 985
HincII GTYRAC 1 cut(s) 771
HindII GTYRAC 1 cut(s) 771
HindIII AAGCTT 1 cut(s) 1045
HinfI GANTC 6 cut(s) 76, 430, 565, 751, 811, 838
HpaII CCGG 2 cut(s) 44, 57
HphI GGTGA 2 cut(s) 574, 892
Hpy166II GTNNAC 6 cut(s) 142, 400, 481, 542, 771, 866
Hpy188I TCNGA 4 cut(s) 50, 225, 756, 816
Hpy188III TCNNGA 7 cut(s) 152, 319, 437, 599, 652, 808, 914
Hpy8I GTNNAC 6 cut(s) 142, 400, 481, 542, 771, 866
HpyAV CCTTC 1 cut(s) 149
HpyCH4III ACNGT 3 cut(s) 785, 830, 863
HpyCH4IV ACGT 4 cut(s) 162, 358, 544, 640
HpyCH4V TGCA 4 cut(s) 104, 142, 760, 851
HpyF10VI GCNNNNNNNGC 3 cut(s) 107, 110, 530
HpyF3I CTNAG 5 cut(s) 569, 681, 726, 774, 869
HpySE526I ACGT 4 cut(s) 162, 358, 544, 640
Hsp92II CATG 4 cut(s) 300, 417, 440, 985
KpnI GGTACC 2 cut(s) 306, 977
Kzo9I GATC 3 cut(s) 277, 441, 991
LguI GCTCTTC 2 cut(s) 195, 531
LmnI GCTCC 2 cut(s) 167, 556
Lsp1109I GCAGC 3 cut(s) 88, 216, 987
LweI GCATC 4 cut(s) 511, 747, 838, 922
MaeII ACGT 4 cut(s) 162, 358, 544, 640
MaeIII GTNAC 5 cut(s) 158, 262, 580, 614, 944
MalI GATC 3 cut(s) 279, 443, 993
MboI GATC 3 cut(s) 277, 441, 991
MboII GAAGA 7 cut(s) 63, 182, 346, 518, 644, 742, 952
MhlI GDGCHC 3 cut(s) 40, 144, 190
MlsI TGGCCA 2 cut(s) 713, 1058
MluCI AATT 5 cut(s) 558, 594, 908, 923, 1009
MluNI TGGCCA 2 cut(s) 713, 1058
MlyI GAGTC 1 cut(s) 847
MmeI TCCRAC 3 cut(s) 28, 145, 969
MnlI CCTC 8 cut(s) 42, 139, 173, 279, 305, 628, 682, 1025
Mox20I TGGCCA 2 cut(s) 713, 1058
MscI TGGCCA 2 cut(s) 713, 1058
MseI TTAA 2 cut(s) 348, 387
Msp20I TGGCCA 2 cut(s) 713, 1058
MspI CCGG 2 cut(s) 44, 57
MspR9I CCNGG 3 cut(s) 57, 213, 555
MvaI CCWGG 2 cut(s) 213, 555
MvnI CGCG 1 cut(s) 845
MwoI GCNNNNNNNGC 3 cut(s) 107, 110, 530
NciI CCSGG 1 cut(s) 57
NdeII GATC 3 cut(s) 277, 441, 991
NlaIII CATG 4 cut(s) 300, 417, 440, 985
NlaIV GGNNCC 2 cut(s) 304, 975
NmuCI GTSAC 2 cut(s) 158, 580
PaeR7I CTCGAG 1 cut(s) 33
PagI TCATGA 1 cut(s) 436
PciSI GCTCTTC 2 cut(s) 195, 531
PfeI GAWTC 5 cut(s) 76, 430, 565, 751, 811
PfoI TCCNGGA 1 cut(s) 553
PinAI ACCGGT 1 cut(s) 43
PkrI GCNGC 4 cut(s) 103, 112, 231, 1002
PleI GAGTC 1 cut(s) 846
PpsI GAGTC 1 cut(s) 846
Ppu21I YACGTR 1 cut(s) 359
Psp6I CCWGG 2 cut(s) 211, 553
PspGI CCWGG 2 cut(s) 211, 553
PspN4I GGNNCC 2 cut(s) 304, 975
PspXI VCTCGAGB 1 cut(s) 33
RsaI GTAC 6 cut(s) 304, 541, 643, 821, 867, 975
RsaNI GTAC 6 cut(s) 303, 540, 642, 820, 866, 974
SapI GCTCTTC 2 cut(s) 195, 531
SaqAI TTAA 2 cut(s) 348, 387
SatI GCNGC 4 cut(s) 102, 111, 230, 1001
Sau3AI GATC 3 cut(s) 277, 441, 991
SchI GAGTC 1 cut(s) 847
ScrFI CCNGG 3 cut(s) 57, 213, 555
SduI GDGCHC 3 cut(s) 40, 144, 190
SfaNI GCATC 4 cut(s) 511, 747, 838, 922
SfcI CTRYAG 2 cut(s) 269, 454
Sfr274I CTCGAG 1 cut(s) 33
SlaI CTCGAG 1 cut(s) 33
SmlI CTYRAG 1 cut(s) 33
SmoI CTYRAG 1 cut(s) 33
SnaBI TACGTA 1 cut(s) 359
Sse9I AATT 5 cut(s) 558, 594, 908, 923, 1009
SsiI CCGC 2 cut(s) 111, 845
SspI AATATT 1 cut(s) 957
StyD4I CCNGG 3 cut(s) 55, 211, 553
StyI CCWWGG 2 cut(s) 114, 645
TaaI ACNGT 3 cut(s) 785, 830, 863
TaiI ACGT 4 cut(s) 165, 361, 547, 643
TaqI TCGA 6 cut(s) 34, 74, 352, 807, 930, 1025
TasI AATT 5 cut(s) 558, 594, 908, 923, 1009
TatI WGTACW 2 cut(s) 539, 865
TauI GCSGC 1 cut(s) 113
TfiI GAWTC 5 cut(s) 76, 430, 565, 751, 811
Tru1I TTAA 2 cut(s) 348, 387
Tru9I TTAA 2 cut(s) 348, 387
TscAI CASTG 1 cut(s) 1066
TseFI GTSAC 2 cut(s) 158, 580
TseI GCWGC 3 cut(s) 101, 229, 1000
Tsp45I GTSAC 2 cut(s) 158, 580
TspDTI ATGAA 6 cut(s) 209, 226, 422, 522, 530, 916
TspGWI ACGGA 1 cut(s) 31
TspRI CASTG 1 cut(s) 1066
VneI GTGCAC 1 cut(s) 140
XapI RAATTY 4 cut(s) 594, 908, 923, 1009
XhoI CTCGAG 1 cut(s) 33
XmiI GTMKAC 1 cut(s) 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.