Rroxscaffold_5G00379450

prohibitin homologues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0007435
Physical Location & Seq
Reverse (-)
59825314 .. 59829093
3780 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00379450.1

Sequence Viewer

Length: 1152 bp
ATGGATCAGCAGCAGAGAGCAGGAGCTCCTCAGTATCGTCCTCCGCCTCCCGGTCAAGGCGGCGGTGGCGGAGAATCCTCAGCCATTCTCGTCGTCCTCGTCGGTTTCCTCGCCATCTTCGCTATGGTGGTGCTTCCATCAATATCAACTATTAGCAATAGCTTTTCCATCCTGCACCAAGTCCCCGAAGGTCATGTTGGTGTATATTGGAGAGGGGGTGCTCTTCTAAAGACTATTACTGATCCAGGGTTTCACCTCAAGTTGCCTCTCATAACACAGTATGAACCTGTTCAAGTGACCCTTCAGACTGATCAAGTGAGGGATATTCCTTGCGGTACAAAAGGGGGTGTCATGATCAACTTTGAAAAGATTGAGGTTGTAAACAGGCTACGTAAGGAATATGTGTATGAGACACTTCTAAATTATGGTGTGCATTATGACAACACGTGGATATATGACAAAATTCATCACGAGATCAATCAGTTCTGCAGCTCGAATTCTCTCCAAGATGTCTATATTGATGTGTTTGATCAGATTGATGAGAAGATGAAAGACGCTCTCCAGGTTGACTGTACCAAATATGCCCCAGGTATTGAAATTATCAACGTGCGTGTCACAAAGCCAAAGATCCCGGATAGTATCAGACGGAACTTTGAGCAGATGGAGGAGGAGCGCACCAAGGTCTTAATTGCTATAGAGAGACAGAGGGTGGTGGAGAAAGAAGCAGAAACCAAGAAGAAGATGGCTATCAGTGAGGCCGAGAAGAATGCCAACGTCAGTAAGATTCTCATGGAACAAAAGCTGATGGAGAAGGACAGTTCCAGGAGGCAGGAAGAAATCGAAAATGCCATGTATCTAGCTCGGGAGAAGAGTCTTGCAGATGCTGATTTCTACAAGGTAATGAGAGAGGCCGAAGCAAACAAGTTGAAGCTCACTCCACAGTTCCTTGAGCTTAAGTTTATCGAGGCCATTGCTGATAATACAAAAATCTTCTTTGGGGACAAGGTACCCAATATGGTTCTAGATCAGAGGTTGCTGGGCAACTTTTTGAAGGTTTCCAGAGAGGTGGCCAAAGATATATCCCAACAAACGTCCGGGGAAGCTAATGCGGACGATGGAGAAGCTGGTAACCCTGAAGTTGAATATACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7

Protein Analysis

383

Amino Acids

43.35

Weight (kDa)

5.34

Isoelectric Point (pI)

39.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 60 - 241 1.3e-28 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1006
AccB1I GGYRCC 1 cut(s) 1006
AciI CCGC 6 cut(s) 44, 60, 63, 69, 333, 1109
AclWI GGATC 3 cut(s) 12, 236, 622
AcoI YGGCCR 1 cut(s) 1068
AcsI RAATTY 2 cut(s) 462, 496
AcuI CTGAAG 1 cut(s) 287
AcvI CACGTG 1 cut(s) 447
AfaI GTAC 3 cut(s) 337, 574, 1008
AfiI CCNNNNNNNGG 2 cut(s) 50, 56
AflII CTTAAG 1 cut(s) 953
AflIII ACRYGT 1 cut(s) 444
AgsI TTSAA 6 cut(s) 293, 365, 596, 928, 1051, 1142
AjnI CCWGG 4 cut(s) 244, 561, 586, 821
AjuI GAANNNNNNNTTGG 2 cut(s) 180, 212
AluBI AGCT 9 cut(s) 26, 162, 492, 802, 860, 931, 952, 1103, 1124
AluI AGCT 9 cut(s) 26, 162, 492, 802, 860, 931, 952, 1103, 1124
Alw21I GWGCWC 2 cut(s) 28, 223
Alw26I GTCTC 2 cut(s) 404, 694
AlwI GGATC 3 cut(s) 12, 236, 622
AlwNI CAGNNNCTG 1 cut(s) 884
Ama87I CYCGRG 1 cut(s) 861
AoxI GGCC 4 cut(s) 756, 909, 966, 1068
ApeKI GCWGC 2 cut(s) 10, 489
ApoI RAATTY 2 cut(s) 462, 496
Asp700I GAANNNNTTC 1 cut(s) 288
Asp718I GGTACC 1 cut(s) 1006
AspLEI GCGC 1 cut(s) 675
AsuC2I CCSGG 3 cut(s) 51, 632, 1096
AsuHPI GGTGA 1 cut(s) 245
AvaI CYCGRG 1 cut(s) 861
BalI TGGCCA 1 cut(s) 1070
BanI GGYRCC 1 cut(s) 1006
BanII GRGCYC 1 cut(s) 28
BauI CACGAG 1 cut(s) 470
BbrPI CACGTG 1 cut(s) 447
Bbv12I GWGCWC 2 cut(s) 28, 223
BbvCI CCTCAGC 1 cut(s) 79
BbvI GCAGC 2 cut(s) 22, 501
BccI CCATC 7 cut(s) 122, 145, 176, 655, 736, 799, 1109
BcgI CGANNNNNNTGC 4 cut(s) 749, 783, 953, 987
BciT130I CCWGG 4 cut(s) 246, 563, 588, 823
BclI TGATCA 3 cut(s) 310, 354, 529
BcnI CCSGG 3 cut(s) 51, 632, 1096
BcoDI GTCTC 2 cut(s) 404, 694
BfaI CTAG 2 cut(s) 857, 1022
BfmI CTRYAG 2 cut(s) 487, 693
BfrI CTTAAG 1 cut(s) 953
BisI GCNGC 3 cut(s) 11, 61, 490
BlsI GCNGC 3 cut(s) 12, 62, 491
Bme1390I CCNGG 7 cut(s) 51, 246, 563, 588, 632, 823, 1096
BmeT110I CYCGRG 1 cut(s) 861
BmiI GGNNCC 1 cut(s) 1008
BmrFI CCNGG 7 cut(s) 51, 246, 563, 588, 632, 823, 1096
BmsI GCATC 1 cut(s) 871
BpmI CTGGAG 1 cut(s) 545
Bpu10I CCTNAGC 1 cut(s) 79
BpuEI CTTGAG 2 cut(s) 242, 968
BpuMI CCSGG 3 cut(s) 51, 632, 1096
BsaAI YACGTR 2 cut(s) 392, 447
BsaBI GATNNNNATC 1 cut(s) 746
BsaJI CCNNGG 4 cut(s) 245, 586, 678, 1095
BsaXI ACNNNNNCTCC 2 cut(s) 202, 232
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 56
Bse3DI GCAATG 1 cut(s) 969
Bse8I GATNNNNATC 1 cut(s) 746
BseBI CCWGG 4 cut(s) 246, 563, 588, 823
BseDI CCNNGG 4 cut(s) 245, 586, 678, 1095
BseGI GGATG 1 cut(s) 168
BseJI GATNNNNATC 1 cut(s) 746
BseLI CCNNNNNNNGG 2 cut(s) 50, 56
BseMI GCAATG 1 cut(s) 969
BseMII CTCAG 2 cut(s) 44, 93
BseRI GAGGAG 3 cut(s) 18, 680, 683
BseXI GCAGC 2 cut(s) 22, 501
BseYI CCCAGC 1 cut(s) 1036
BsgI GTGCAG 1 cut(s) 158
BshFI GGCC 4 cut(s) 758, 911, 968, 1070
BshNI GGYRCC 1 cut(s) 1006
BsiHKAI GWGCWC 2 cut(s) 28, 223
BsiHKCI CYCGRG 1 cut(s) 861
BsiSI CCGG 3 cut(s) 51, 632, 1095
BslFI GGGAC 2 cut(s) 167, 1013
BslI CCNNNNNNNGG 2 cut(s) 50, 56
BsmAI GTCTC 2 cut(s) 404, 694
BsmFI GGGAC 2 cut(s) 167, 1013
BsmI GAATGC 1 cut(s) 772
BsnI GGCC 4 cut(s) 758, 911, 968, 1070
BsoBI CYCGRG 1 cut(s) 861
Bsp1286I GDGCHC 2 cut(s) 28, 223
Bsp143I GATC 8 cut(s) 4, 241, 310, 354, 474, 529, 627, 1024
BspACI CCGC 6 cut(s) 44, 60, 63, 69, 333, 1109
BspANI GGCC 4 cut(s) 758, 911, 968, 1070
BspCNI CTCAG 2 cut(s) 43, 92
BspHI TCATGA 1 cut(s) 351
BspLI GGNNCC 1 cut(s) 1008
BspMAI CTGCAG 1 cut(s) 491
BspPI GGATC 3 cut(s) 12, 236, 622
BspQI GCTCTTC 1 cut(s) 228
BspT107I GGYRCC 1 cut(s) 1006
BspTI CTTAAG 1 cut(s) 953
BsrDI GCAATG 1 cut(s) 969
BssECI CCNNGG 4 cut(s) 245, 586, 678, 1095
BssMI GATC 8 cut(s) 4, 241, 310, 354, 474, 529, 627, 1024
BssSI CACGAG 1 cut(s) 470
BssT1I CCWWGG 1 cut(s) 678
Bst2BI CACGAG 1 cut(s) 470
Bst2UI CCWGG 4 cut(s) 246, 563, 588, 823
Bst4CI ACNGT 4 cut(s) 279, 572, 818, 942
Bst6I CTCTTC 2 cut(s) 228, 863
BstAFI CTTAAG 1 cut(s) 953
BstBAI YACGTR 2 cut(s) 392, 447
BstDEI CTNAG 2 cut(s) 30, 79
BstEII GGTNACC 1 cut(s) 1127
BstF5I GGATG 1 cut(s) 168
BstHHI GCGC 1 cut(s) 675
BstKTI GATC 8 cut(s) 7, 244, 313, 357, 477, 532, 630, 1027
BstMAI GTCTC 2 cut(s) 404, 694
BstMBI GATC 8 cut(s) 4, 241, 310, 354, 474, 529, 627, 1024
BstMWI GCNNNNNNNGC 2 cut(s) 66, 119
BstNI CCWGG 4 cut(s) 246, 563, 588, 823
BstPI GGTNACC 1 cut(s) 1127
BstSCI CCNGG 7 cut(s) 49, 244, 561, 586, 630, 821, 1094
BstSFI CTRYAG 2 cut(s) 487, 693
BstSNI TACGTA 1 cut(s) 392
BstV1I GCAGC 2 cut(s) 22, 501
BstX2I RGATCY 1 cut(s) 627
BstXI CCANNNNNNTGG 1 cut(s) 1066
BstYI RGATCY 1 cut(s) 627
BsuRI GGCC 4 cut(s) 758, 911, 968, 1070
BtsCI GGATG 1 cut(s) 168
BtsIMutI CAGTG 1 cut(s) 757
CaiI CAGNNNCTG 1 cut(s) 884
CciI TCATGA 1 cut(s) 351
CfoI GCGC 1 cut(s) 675
CseI GACGC 1 cut(s) 563
Csp6I GTAC 3 cut(s) 336, 573, 1007
CviAII CATG 4 cut(s) 194, 352, 790, 850
CviQI GTAC 3 cut(s) 336, 573, 1007
DdeI CTNAG 2 cut(s) 30, 79
DpnI GATC 8 cut(s) 6, 243, 312, 356, 476, 531, 629, 1026
DpnII GATC 8 cut(s) 4, 241, 310, 354, 474, 529, 627, 1024
EaeI YGGCCR 1 cut(s) 1068
Eam1104I CTCTTC 2 cut(s) 228, 863
EarI CTCTTC 2 cut(s) 228, 863
EciI GGCGGA 2 cut(s) 33, 84
Ecl136II GAGCTC 1 cut(s) 26
Eco105I TACGTA 1 cut(s) 392
Eco130I CCWWGG 1 cut(s) 678
Eco24I GRGCYC 1 cut(s) 28
Eco53kI GAGCTC 1 cut(s) 26
Eco57I CTGAAG 1 cut(s) 287
Eco72I CACGTG 1 cut(s) 447
Eco88I CYCGRG 1 cut(s) 861
Eco91I GGTNACC 1 cut(s) 1127
EcoICRI GAGCTC 1 cut(s) 26
EcoO65I GGTNACC 1 cut(s) 1127
EcoRI GAATTC 1 cut(s) 496
EcoRII CCWGG 4 cut(s) 244, 561, 586, 821
EcoT14I CCWWGG 1 cut(s) 678
EcoT38I GRGCYC 1 cut(s) 28
ErhI CCWWGG 1 cut(s) 678
FaeI CATG 4 cut(s) 197, 355, 793, 853
FalI AAGNNNNNCTT 2 cut(s) 285, 317
FaqI GGGAC 2 cut(s) 167, 1013
FatI CATG 4 cut(s) 193, 351, 789, 849
FbaI TGATCA 3 cut(s) 310, 354, 529
Fnu4HI GCNGC 3 cut(s) 11, 61, 490
FokI GGATG 1 cut(s) 155
FriOI GRGCYC 1 cut(s) 28
Fsp4HI GCNGC 3 cut(s) 11, 61, 490
FspBI CTAG 2 cut(s) 857, 1022
GlaI GCGC 1 cut(s) 674
GluI GCNGC 3 cut(s) 11, 61, 490
GsaI CCCAGC 1 cut(s) 1040
GsuI CTGGAG 1 cut(s) 545
HaeIII GGCC 4 cut(s) 758, 911, 968, 1070
HapII CCGG 3 cut(s) 51, 632, 1095
HgaI GACGC 1 cut(s) 563
HhaI GCGC 1 cut(s) 675
Hin1II CATG 4 cut(s) 197, 355, 793, 853
Hin6I GCGC 1 cut(s) 673
HinP1I GCGC 1 cut(s) 673
HincII GTYRAC 1 cut(s) 568
HindII GTYRAC 1 cut(s) 568
HinfI GANTC 3 cut(s) 74, 784, 871
HpaII CCGG 3 cut(s) 51, 632, 1095
HphI GGTGA 1 cut(s) 245
Hpy166II GTNNAC 2 cut(s) 382, 568
Hpy188I TCNGA 4 cut(s) 306, 534, 644, 1029
Hpy188III TCNNGA 5 cut(s) 352, 470, 863, 1022, 1059
Hpy8I GTNNAC 2 cut(s) 382, 568
Hpy99I CGWCG 2 cut(s) 95, 104
HpyAV CCTTC 4 cut(s) 182, 311, 805, 1045
HpyCH4III ACNGT 4 cut(s) 279, 572, 818, 942
HpyCH4IV ACGT 5 cut(s) 391, 446, 606, 774, 1091
HpyCH4V TGCA 4 cut(s) 175, 433, 489, 878
HpyF10VI GCNNNNNNNGC 2 cut(s) 66, 119
HpyF3I CTNAG 2 cut(s) 30, 79
HpySE526I ACGT 5 cut(s) 391, 446, 606, 774, 1091
Hsp92II CATG 4 cut(s) 197, 355, 793, 853
HspAI GCGC 1 cut(s) 673
KpnI GGTACC 1 cut(s) 1010
Ksp22I TGATCA 3 cut(s) 310, 354, 529
Kzo9I GATC 8 cut(s) 4, 241, 310, 354, 474, 529, 627, 1024
LguI GCTCTTC 1 cut(s) 228
LmnI GCTCC 3 cut(s) 23, 31, 670
Lsp1109I GCAGC 2 cut(s) 22, 501
LweI GCATC 1 cut(s) 871
MaeI CTAG 2 cut(s) 857, 1022
MaeII ACGT 5 cut(s) 391, 446, 606, 774, 1091
MaeIII GTNAC 3 cut(s) 295, 613, 1127
MalI GATC 8 cut(s) 6, 243, 312, 356, 476, 531, 629, 1026
MboI GATC 8 cut(s) 4, 241, 310, 354, 474, 529, 627, 1024
MboII GAAGA 9 cut(s) 109, 215, 556, 748, 751, 775, 845, 880, 982
MflI RGATCY 1 cut(s) 627
MhlI GDGCHC 2 cut(s) 28, 223
MlsI TGGCCA 1 cut(s) 1070
MluCI AATT 5 cut(s) 421, 462, 496, 597, 687
MluNI TGGCCA 1 cut(s) 1070
MlyI GAGTC 1 cut(s) 880
Mox20I TGGCCA 1 cut(s) 1070
MroXI GAANNNNTTC 1 cut(s) 288
MscI TGGCCA 1 cut(s) 1070
MseI TTAA 2 cut(s) 686, 954
MslI CAYNNNNRTG 1 cut(s) 198
Msp20I TGGCCA 1 cut(s) 1070
MspCI CTTAAG 1 cut(s) 953
MspI CCGG 3 cut(s) 51, 632, 1095
MspR9I CCNGG 7 cut(s) 51, 246, 563, 588, 632, 823, 1096
Mva1269I GAATGC 1 cut(s) 772
MvaI CCWGG 4 cut(s) 246, 563, 588, 823
MwoI GCNNNNNNNGC 2 cut(s) 66, 119
NciI CCSGG 3 cut(s) 51, 632, 1096
NdeII GATC 8 cut(s) 4, 241, 310, 354, 474, 529, 627, 1024
NlaIII CATG 4 cut(s) 197, 355, 793, 853
NlaIV GGNNCC 1 cut(s) 1008
NmeAIII GCCGAG 1 cut(s) 784
NmuCI GTSAC 2 cut(s) 295, 613
PagI TCATGA 1 cut(s) 351
PciSI GCTCTTC 1 cut(s) 228
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PctI GAATGC 1 cut(s) 772
PdmI GAANNNNTTC 1 cut(s) 288
PfeI GAWTC 2 cut(s) 74, 784
PfoI TCCNGGA 2 cut(s) 630, 821
PkrI GCNGC 3 cut(s) 12, 62, 491
PleI GAGTC 1 cut(s) 879
PmaCI CACGTG 1 cut(s) 447
PmlI CACGTG 1 cut(s) 447
PpsI GAGTC 1 cut(s) 879
Ppu21I YACGTR 2 cut(s) 392, 447
Psp124BI GAGCTC 1 cut(s) 28
Psp6I CCWGG 4 cut(s) 244, 561, 586, 821
PspCI CACGTG 1 cut(s) 447
PspEI GGTNACC 1 cut(s) 1127
PspFI CCCAGC 1 cut(s) 1036
PspGI CCWGG 4 cut(s) 244, 561, 586, 821
PspN4I GGNNCC 1 cut(s) 1008
PstI CTGCAG 1 cut(s) 491
PstNI CAGNNNCTG 1 cut(s) 884
PsuI RGATCY 1 cut(s) 627
RsaI GTAC 3 cut(s) 337, 574, 1008
RsaNI GTAC 3 cut(s) 336, 573, 1007
RseI CAYNNNNRTG 1 cut(s) 198
SacI GAGCTC 1 cut(s) 28
SapI GCTCTTC 1 cut(s) 228
SaqAI TTAA 2 cut(s) 686, 954
SatI GCNGC 3 cut(s) 11, 61, 490
Sau3AI GATC 8 cut(s) 4, 241, 310, 354, 474, 529, 627, 1024
SchI GAGTC 1 cut(s) 880
ScrFI CCNGG 7 cut(s) 51, 246, 563, 588, 632, 823, 1096
SduI GDGCHC 2 cut(s) 28, 223
SfaNI GCATC 1 cut(s) 871
SfcI CTRYAG 2 cut(s) 487, 693
SmiMI CAYNNNNRTG 1 cut(s) 198
SmlI CTYRAG 3 cut(s) 257, 947, 953
SmoI CTYRAG 3 cut(s) 257, 947, 953
SnaBI TACGTA 1 cut(s) 392
Sse9I AATT 5 cut(s) 421, 462, 496, 597, 687
SsiI CCGC 6 cut(s) 44, 60, 63, 69, 333, 1109
SspMI CTAG 2 cut(s) 857, 1022
SstI GAGCTC 1 cut(s) 28
StyD4I CCNGG 7 cut(s) 49, 244, 561, 586, 630, 821, 1094
StyI CCWWGG 1 cut(s) 678
TaaI ACNGT 4 cut(s) 279, 572, 818, 942
TaiI ACGT 5 cut(s) 394, 449, 609, 777, 1094
TaqI TCGA 3 cut(s) 494, 840, 963
TasI AATT 5 cut(s) 421, 462, 496, 597, 687
TauI GCSGC 1 cut(s) 63
TfiI GAWTC 2 cut(s) 74, 784
Tru1I TTAA 2 cut(s) 686, 954
Tru9I TTAA 2 cut(s) 686, 954
TscAI CASTG 1 cut(s) 757
TseFI GTSAC 2 cut(s) 295, 613
TseI GCWGC 2 cut(s) 10, 489
Tsp45I GTSAC 2 cut(s) 295, 613
TspDTI ATGAA 3 cut(s) 297, 455, 563
TspGWI ACGGA 1 cut(s) 661
TspRI CASTG 1 cut(s) 757
Vha464I CTTAAG 1 cut(s) 953
XapI RAATTY 2 cut(s) 462, 496
XbaI TCTAGA 1 cut(s) 1021
XcmI CCANNNNNNNNNTGG 2 cut(s) 121, 739
XmnI GAANNNNTTC 1 cut(s) 288
XspI CTAG 2 cut(s) 857, 1022
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.