Rh4DG366900

prohibitin homologues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0007435
Physical Location & Seq
Reverse (-)
58693882 .. 58697200
3319 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG366900.1

Sequence Viewer

Length: 1086 bp
ATGTACTCACAGCAGCAGAGACAAACAGCTCCACAGCCTCGCCCTCGGCCTCAGAATCAAGACGGCGGCGGCGGCGGCGATTTCTCGGCCGTTTGCTTCGTTCTCTTCCTGTTCCTTGCCGTCGCCATTTTCACTTTGGTAATCAGCGGTCTGCACCAAGTTCCGGAAGGTCATGCTGGGGTGTATTGGAGAGGAGGTGCTCTTCTGAAGACTGTTACAGATCCAGGGTTTCATCTCATGCTTCCCCTGATAACCGACTTTGAGCCTGTTCAAGTCACCCTTCAGACTGATCAGGTGAAGGATATTCCATGTGGTACAAAGGGGGGTGTCGTGATTAACTTTGAGAAGATTGAGGTTGTTAACCGGCTTCGCAAGGAATTTGTATATGAGACACTTCTCAATTATGGTGTGAAGTATGACCGTACATGGATATATGACAAAATTCATCATGAGATCAATCAGTTCTGCAGCTCACATTCACTTCAAGATGTCTACATTGATGTGTTCGATCAGATTGATGAAAAGATGAAAGAAGCTCTTCAGGGTGATTGCACACGTTATGCTCCAGGTATTGAAATTTTCAGTGTCCGTGTCACAAAGCCGACTATCCCAGATAGTGTAAGACATAACTTTGAGCAGATGGAGGAGCAACGTACCAAGGTCCTAATTGCTATTGAGAGACAGAGAGTGGTGGAGAAAGAGGCAGAAACCAAGAAGAAGATGGCTATAAGTGAAGCCGAGAAGAATTCCAACGTGAGTAAGATTCTCATGGAGCAAAAGTTGATGGAGAAGGACAGTTCCAGGAGGCAGCAAGAAATTGAAAATGACATGTATCTTGCTCGGGAAAAGAGTGTAGCAGATGCTGATTTCTACAAAGTCATGAAAGAGGCTGAAGCAAACAGACTGAAGCTTACTCCGCAGTTCCTTGAGCTCAAATTCATCGAGGCTATTGCTGACAATACGAAAATTTTCTTTGGGGACAAGGTACCAAATATGGTTTTGGATCAGAGGTTGCTGGGGAACTTCTTAAAGGTTTCCAGAGAGTTGTCGGGAGATGTGGCCAGGGGAGGAAGTGCAGCATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7

Protein Analysis

361

Amino Acids

41.18

Weight (kDa)

6.06

Isoelectric Point (pI)

39.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 53 - 231 2.1e-28 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 985
AccB1I GGYRCC 1 cut(s) 985
AccI GTMKAC 1 cut(s) 492
AccIII TCCGGA 1 cut(s) 163
AciI CCGC 6 cut(s) 66, 69, 72, 75, 147, 917
AclWI GGATC 2 cut(s) 215, 1011
AcoI YGGCCR 2 cut(s) 87, 1059
AcsI RAATTY 6 cut(s) 377, 441, 576, 745, 935, 966
AcuI CTGAAG 5 cut(s) 227, 266, 524, 912, 926
AfaI GTAC 5 cut(s) 5, 316, 424, 655, 987
AfiI CCNNNNNNNGG 1 cut(s) 163
AflIII ACRYGT 2 cut(s) 554, 828
AgsI TTSAA 4 cut(s) 272, 485, 575, 821
AjnI CCWGG 4 cut(s) 223, 565, 800, 1061
AluBI AGCT 5 cut(s) 29, 471, 536, 910, 931
AluI AGCT 5 cut(s) 29, 471, 536, 910, 931
Alw21I GWGCWC 2 cut(s) 202, 933
Alw26I GTCTC 3 cut(s) 13, 383, 673
AlwI GGATC 2 cut(s) 215, 1011
AlwNI CAGNNNCTG 1 cut(s) 863
Ama87I CYCGRG 1 cut(s) 840
Aor13HI TCCGGA 1 cut(s) 163
AoxI GGCC 3 cut(s) 47, 87, 1059
ApeKI GCWGC 4 cut(s) 13, 468, 808, 1076
ApoI RAATTY 6 cut(s) 377, 441, 576, 745, 935, 966
Asp700I GAANNNNTTC 2 cut(s) 537, 968
Asp718I GGTACC 1 cut(s) 985
AspS9I GGNCC 1 cut(s) 661
AsuHPI GGTGA 3 cut(s) 268, 307, 557
AvaI CYCGRG 1 cut(s) 840
AvaII GGWCC 1 cut(s) 661
BalI TGGCCA 1 cut(s) 1061
BanI GGYRCC 1 cut(s) 985
BanII GRGCYC 1 cut(s) 933
BbsI GAAGAC 1 cut(s) 215
Bbv12I GWGCWC 2 cut(s) 202, 933
BbvI GCAGC 3 cut(s) 25, 480, 820
BccI CCATC 3 cut(s) 634, 715, 778
BceAI ACGGC 3 cut(s) 74, 79, 104
BcgI CGANNNNNNTGC 2 cut(s) 932, 966
BciT130I CCWGG 4 cut(s) 225, 567, 802, 1063
BclI TGATCA 1 cut(s) 289
BcoDI GTCTC 3 cut(s) 13, 383, 673
BfmI CTRYAG 1 cut(s) 466
BisI GCNGC 8 cut(s) 14, 67, 70, 73, 76, 469, 809, 1077
BlsI GCNGC 8 cut(s) 15, 68, 71, 74, 77, 470, 810, 1078
Bme1390I CCNGG 4 cut(s) 225, 567, 802, 1063
Bme18I GGWCC 1 cut(s) 661
BmeT110I CYCGRG 1 cut(s) 840
BmgT120I GGNCC 1 cut(s) 661
BmiI GGNNCC 1 cut(s) 987
BmrFI CCNGG 4 cut(s) 225, 567, 802, 1063
BmsI GCATC 1 cut(s) 850
BpiI GAAGAC 1 cut(s) 215
BpmI CTGGAG 1 cut(s) 549
BpuEI CTTGAG 1 cut(s) 947
BsaJI CCNNGG 4 cut(s) 44, 224, 657, 1062
BsaWI WCCGGW 1 cut(s) 163
BsaXI ACNNNNNCTCC 4 cut(s) 181, 211, 764, 794
Bsc4I CCNNNNNNNGG 1 cut(s) 163
Bse118I RCCGGY 1 cut(s) 363
BseAI TCCGGA 1 cut(s) 163
BseBI CCWGG 4 cut(s) 225, 567, 802, 1063
BseDI CCNNGG 4 cut(s) 44, 224, 657, 1062
BseLI CCNNNNNNNGG 1 cut(s) 163
BseMII CTCAG 1 cut(s) 65
BseRI GAGGAG 2 cut(s) 207, 659
BseX3I CGGCCG 1 cut(s) 87
BseXI GCAGC 3 cut(s) 25, 480, 820
BseYI CCCAGC 2 cut(s) 176, 1015
BsgI GTGCAG 1 cut(s) 137
Bsh1285I CGRYCG 1 cut(s) 90
BshFI GGCC 3 cut(s) 49, 89, 1061
BshNI GGYRCC 1 cut(s) 985
BsiEI CGRYCG 1 cut(s) 90
BsiHKAI GWGCWC 2 cut(s) 202, 933
BsiHKCI CYCGRG 1 cut(s) 840
BsiSI CCGG 2 cut(s) 164, 364
BslFI GGGAC 1 cut(s) 992
BslI CCNNNNNNNGG 1 cut(s) 163
BsmAI GTCTC 3 cut(s) 13, 383, 673
BsmFI GGGAC 1 cut(s) 992
BsnI GGCC 3 cut(s) 49, 89, 1061
BsoBI CYCGRG 1 cut(s) 840
Bsp1286I GDGCHC 2 cut(s) 202, 933
Bsp13I TCCGGA 1 cut(s) 163
Bsp143I GATC 5 cut(s) 220, 289, 453, 508, 1003
BspACI CCGC 6 cut(s) 66, 69, 72, 75, 147, 917
BspANI GGCC 3 cut(s) 49, 89, 1061
BspCNI CTCAG 1 cut(s) 64
BspEI TCCGGA 1 cut(s) 163
BspHI TCATGA 2 cut(s) 448, 879
BspLI GGNNCC 1 cut(s) 987
BspMAI CTGCAG 1 cut(s) 470
BspPI GGATC 2 cut(s) 215, 1011
BspQI GCTCTTC 2 cut(s) 207, 543
BspT107I GGYRCC 1 cut(s) 985
BsrFI RCCGGY 1 cut(s) 363
BssAI RCCGGY 1 cut(s) 363
BssECI CCNNGG 4 cut(s) 44, 224, 657, 1062
BssMI GATC 5 cut(s) 220, 289, 453, 508, 1003
BssT1I CCWWGG 1 cut(s) 657
Bst2UI CCWGG 4 cut(s) 225, 567, 802, 1063
Bst4CI ACNGT 3 cut(s) 214, 422, 797
Bst6I CTCTTC 3 cut(s) 110, 207, 543
BstDEI CTNAG 1 cut(s) 51
BstKTI GATC 5 cut(s) 223, 292, 456, 511, 1006
BstMAI GTCTC 3 cut(s) 13, 383, 673
BstMBI GATC 5 cut(s) 220, 289, 453, 508, 1003
BstMCI CGRYCG 1 cut(s) 90
BstMWI GCNNNNNNNGC 3 cut(s) 72, 75, 916
BstNI CCWGG 4 cut(s) 225, 567, 802, 1063
BstNSI RCATGY 1 cut(s) 832
BstSCI CCNGG 4 cut(s) 223, 565, 800, 1061
BstSFI CTRYAG 1 cut(s) 466
BstV1I GCAGC 3 cut(s) 25, 480, 820
BstV2I GAAGAC 1 cut(s) 215
BstX2I RGATCY 1 cut(s) 220
BstYI RGATCY 1 cut(s) 220
BstZI CGGCCG 1 cut(s) 87
BsuRI GGCC 3 cut(s) 49, 89, 1061
BtsIMutI CAGTG 1 cut(s) 589
CaiI CAGNNNCTG 1 cut(s) 863
CciI TCATGA 2 cut(s) 448, 879
Cfr10I RCCGGY 1 cut(s) 363
Cfr13I GGNCC 1 cut(s) 661
Csp6I GTAC 5 cut(s) 4, 315, 423, 654, 986
CviAII CATG 8 cut(s) 173, 238, 309, 426, 449, 769, 829, 880
CviQI GTAC 5 cut(s) 4, 315, 423, 654, 986
DdeI CTNAG 1 cut(s) 51
DpnI GATC 5 cut(s) 222, 291, 455, 510, 1005
DpnII GATC 5 cut(s) 220, 289, 453, 508, 1003
EaeI YGGCCR 2 cut(s) 87, 1059
EagI CGGCCG 1 cut(s) 87
Eam1104I CTCTTC 3 cut(s) 110, 207, 543
EarI CTCTTC 3 cut(s) 110, 207, 543
Ecl136II GAGCTC 1 cut(s) 931
EclXI CGGCCG 1 cut(s) 87
Eco130I CCWWGG 1 cut(s) 657
Eco24I GRGCYC 1 cut(s) 933
Eco47I GGWCC 1 cut(s) 661
Eco52I CGGCCG 1 cut(s) 87
Eco53kI GAGCTC 1 cut(s) 931
Eco57I CTGAAG 5 cut(s) 227, 266, 524, 912, 926
Eco88I CYCGRG 1 cut(s) 840
EcoICRI GAGCTC 1 cut(s) 931
EcoO109I RGGNCCY 1 cut(s) 661
EcoRI GAATTC 1 cut(s) 745
EcoRII CCWGG 4 cut(s) 223, 565, 800, 1061
EcoT14I CCWWGG 1 cut(s) 657
EcoT38I GRGCYC 1 cut(s) 933
ErhI CCWWGG 1 cut(s) 657
FaeI CATG 8 cut(s) 176, 241, 312, 429, 452, 772, 832, 883
FalI AAGNNNNNCTT 4 cut(s) 264, 296, 522, 554
FaqI GGGAC 1 cut(s) 992
FatI CATG 8 cut(s) 172, 237, 308, 425, 448, 768, 828, 879
FbaI TGATCA 1 cut(s) 289
FblI GTMKAC 1 cut(s) 492
Fnu4HI GCNGC 8 cut(s) 14, 67, 70, 73, 76, 469, 809, 1077
FriOI GRGCYC 1 cut(s) 933
Fsp4HI GCNGC 8 cut(s) 14, 67, 70, 73, 76, 469, 809, 1077
GluI GCNGC 8 cut(s) 14, 67, 70, 73, 76, 469, 809, 1077
GsaI CCCAGC 2 cut(s) 180, 1019
GsuI CTGGAG 1 cut(s) 549
HaeIII GGCC 3 cut(s) 49, 89, 1061
HapII CCGG 2 cut(s) 164, 364
Hin1II CATG 8 cut(s) 176, 241, 312, 429, 452, 772, 832, 883
HincII GTYRAC 1 cut(s) 361
HindII GTYRAC 1 cut(s) 361
HindIII AAGCTT 1 cut(s) 908
HinfI GANTC 2 cut(s) 55, 763
HpaI GTTAAC 1 cut(s) 361
HpaII CCGG 2 cut(s) 164, 364
HphI GGTGA 3 cut(s) 268, 307, 557
Hpy166II GTNNAC 2 cut(s) 361, 493
Hpy188I TCNGA 5 cut(s) 54, 207, 285, 513, 1008
Hpy188III TCNNGA 9 cut(s) 59, 164, 331, 449, 485, 842, 880, 1038, 1050
Hpy8I GTNNAC 2 cut(s) 361, 493
Hpy99I CGWCG 1 cut(s) 125
HpyAV CCTTC 4 cut(s) 161, 290, 292, 784
HpyCH4III ACNGT 3 cut(s) 214, 422, 797
HpyCH4IV ACGT 3 cut(s) 556, 652, 753
HpyCH4V TGCA 4 cut(s) 154, 468, 552, 1076
HpyF10VI GCNNNNNNNGC 3 cut(s) 72, 75, 916
HpyF3I CTNAG 1 cut(s) 51
HpySE526I ACGT 3 cut(s) 556, 652, 753
Hsp92II CATG 8 cut(s) 176, 241, 312, 429, 452, 772, 832, 883
Kpn2I TCCGGA 1 cut(s) 163
KpnI GGTACC 1 cut(s) 989
Ksp22I TGATCA 1 cut(s) 289
KspAI GTTAAC 1 cut(s) 361
Kzo9I GATC 5 cut(s) 220, 289, 453, 508, 1003
LguI GCTCTTC 2 cut(s) 207, 543
LmnI GCTCC 4 cut(s) 34, 568, 646, 772
Lsp1109I GCAGC 3 cut(s) 25, 480, 820
LweI GCATC 1 cut(s) 850
MaeII ACGT 3 cut(s) 556, 652, 753
MaeIII GTNAC 3 cut(s) 214, 274, 592
MalI GATC 5 cut(s) 222, 291, 455, 510, 1005
MboI GATC 5 cut(s) 220, 289, 453, 508, 1003
MboII GAAGA 8 cut(s) 97, 194, 220, 358, 530, 727, 730, 754
MflI RGATCY 1 cut(s) 220
MhlI GDGCHC 2 cut(s) 202, 933
MlsI TGGCCA 1 cut(s) 1061
MluCI AATT 9 cut(s) 377, 400, 441, 576, 666, 745, 816, 935, 966
MluNI TGGCCA 1 cut(s) 1061
MmeI TCCRAC 1 cut(s) 774
Mox20I TGGCCA 1 cut(s) 1061
MroI TCCGGA 1 cut(s) 163
MroXI GAANNNNTTC 2 cut(s) 537, 968
MscI TGGCCA 1 cut(s) 1061
MseI TTAA 3 cut(s) 336, 360, 1028
MslI CAYNNNNRTG 1 cut(s) 500
Msp20I TGGCCA 1 cut(s) 1061
MspA1I CMGCKG 1 cut(s) 147
MspI CCGG 2 cut(s) 164, 364
MspR9I CCNGG 4 cut(s) 225, 567, 802, 1063
MvaI CCWGG 4 cut(s) 225, 567, 802, 1063
MwoI GCNNNNNNNGC 3 cut(s) 72, 75, 916
NdeII GATC 5 cut(s) 220, 289, 453, 508, 1003
NlaIII CATG 8 cut(s) 176, 241, 312, 429, 452, 772, 832, 883
NlaIV GGNNCC 1 cut(s) 987
NmeAIII GCCGAG 3 cut(s) 25, 65, 763
NmuCI GTSAC 2 cut(s) 274, 592
NspI RCATGY 1 cut(s) 832
PagI TCATGA 2 cut(s) 448, 879
PciI ACATGT 1 cut(s) 828
PciSI GCTCTTC 2 cut(s) 207, 543
PdmI GAANNNNTTC 2 cut(s) 537, 968
PfeI GAWTC 2 cut(s) 55, 763
PfoI TCCNGGA 1 cut(s) 800
PkrI GCNGC 8 cut(s) 15, 68, 71, 74, 77, 470, 810, 1078
PpuMI RGGWCCY 1 cut(s) 661
PscI ACATGT 1 cut(s) 828
Psp124BI GAGCTC 1 cut(s) 933
Psp5II RGGWCCY 1 cut(s) 661
Psp6I CCWGG 4 cut(s) 223, 565, 800, 1061
PspFI CCCAGC 2 cut(s) 176, 1015
PspGI CCWGG 4 cut(s) 223, 565, 800, 1061
PspN4I GGNNCC 1 cut(s) 987
PspPI GGNCC 1 cut(s) 661
PspPPI RGGWCCY 1 cut(s) 661
PstI CTGCAG 1 cut(s) 470
PstNI CAGNNNCTG 1 cut(s) 863
PsuI RGATCY 1 cut(s) 220
RsaI GTAC 5 cut(s) 5, 316, 424, 655, 987
RsaNI GTAC 5 cut(s) 4, 315, 423, 654, 986
RseI CAYNNNNRTG 1 cut(s) 500
SacI GAGCTC 1 cut(s) 933
SapI GCTCTTC 2 cut(s) 207, 543
SaqAI TTAA 3 cut(s) 336, 360, 1028
SatI GCNGC 8 cut(s) 14, 67, 70, 73, 76, 469, 809, 1077
Sau3AI GATC 5 cut(s) 220, 289, 453, 508, 1003
Sau96I GGNCC 1 cut(s) 661
ScrFI CCNGG 4 cut(s) 225, 567, 802, 1063
SduI GDGCHC 2 cut(s) 202, 933
SfaNI GCATC 1 cut(s) 850
SfcI CTRYAG 1 cut(s) 466
SinI GGWCC 1 cut(s) 661
SmiMI CAYNNNNRTG 1 cut(s) 500
SmlI CTYRAG 1 cut(s) 926
SmoI CTYRAG 1 cut(s) 926
Sse9I AATT 9 cut(s) 377, 400, 441, 576, 666, 745, 816, 935, 966
SsiI CCGC 6 cut(s) 66, 69, 72, 75, 147, 917
SstI GAGCTC 1 cut(s) 933
StyD4I CCNGG 4 cut(s) 223, 565, 800, 1061
StyI CCWWGG 1 cut(s) 657
TaaI ACNGT 3 cut(s) 214, 422, 797
TaiI ACGT 3 cut(s) 559, 655, 756
TaqI TCGA 2 cut(s) 507, 942
TasI AATT 9 cut(s) 377, 400, 441, 576, 666, 745, 816, 935, 966
TatI WGTACW 1 cut(s) 3
TauI GCSGC 4 cut(s) 69, 72, 75, 78
TfiI GAWTC 2 cut(s) 55, 763
Tru1I TTAA 3 cut(s) 336, 360, 1028
Tru9I TTAA 3 cut(s) 336, 360, 1028
TscAI CASTG 1 cut(s) 589
TseFI GTSAC 2 cut(s) 274, 592
TseI GCWGC 4 cut(s) 13, 468, 808, 1076
Tsp45I GTSAC 2 cut(s) 274, 592
TspDTI ATGAA 6 cut(s) 221, 434, 534, 542, 896, 928
TspGWI ACGGA 1 cut(s) 578
TspRI CASTG 1 cut(s) 589
VpaK11BI GGWCC 1 cut(s) 661
XapI RAATTY 6 cut(s) 377, 441, 576, 745, 935, 966
XceI RCATGY 1 cut(s) 832
XcmI CCANNNNNNNNNTGG 2 cut(s) 133, 718
XmiI GTMKAC 1 cut(s) 492
XmnI GAANNNNTTC 2 cut(s) 537, 968
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.