Prupe.1G286500_v2.0.a1

prohibitin homologues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0007435
Physical Location & Seq
Forward (+)
28692731 .. 28696460
3730 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G286500.1

Sequence Viewer

Length: 1116 bp
ATGGATCCACAGCAGCAGAGACCAGGAGCTCCACATCATCGTCCTCAGCCTCCGGCTCCAGGCGGAGGTGGCGATTCTTCGGCCGTTCTCTTCGTACTCTTCGGTTTCCTAGCCATCTTAGCCTTGACGATGCTTCCATCAACATCATTATCCATTCTTCACCAAGTTCCAGAAGGTCATGTTGGGGTATATTGGAGAGGAGGTGCACTTCTGAAGACTATTACTGATCCAGGTTTTCATCTCAAGCTGCCCTTGGTAACCCAGTTTGAACCTGTTCAAGTCACCCTTCAGACTGATCAGGTGAGGGATATTCCATGTGGTACAAAAGGAGGTGTCATGATCAATTTTGAGAAGATAGAGGTTGTAAACCGGCTTCGTAAAGAATTTGTGTATGAGACACTTCTCAATTATGGTGTGCAATATGACAACACGTGGATATATGACAAAATTCATCATGAGATCAATCAGTTCTGCAGCTCACATTCTCTTCAAGAAGTATACATTGATGTGTTCGATCAGATTGATGAAAAGATGAAGGAAGCTCTTCAGGGTGACTGTACACGTTATGCTCCAGGAATTGAAATTATCAACGTACGTGTTACAAAGCCTGCCATCCCAGAGAGTATAAGACGCAACTTTGAACAAATGGAAGAGGAACGGACTAAGGTCTTAATTGCTATAGAGAGGCAGAGAGTGGTGGAGAAAGAGGCAGAAACCAAGAAGAAGATGGCTATCAGTGAGGCTGAGAAGAATGCCAATGTGAGCAAGATTCTCATGGAACAAAAGTTAACGGAGAAGGACAGTTCCAGGAGGCAGGCGGAAATCGAAAATCAGATGTATACAGCGAGGGAAAAGAGCCTTGCAGATGCTGATTTCTATAAAGTAATGAGAGAAGCTGAAGCAAACAAGTTGAAGCTTACTCCACAATTTCTTGAGCTTAAATTCATCGAGGCCATAGCTGACAATACCAAAATTTTCTTTGGAGACAAGGTACCTAATATGGTTTTGGATCAGAGGTTGCTGGGGAACTTCTTGCAGGTTTCCAAAGAAGTTTCCAAGGAAGTTAACTCAGAATCTGGCTCTGGGGAGGATAATCCTGAAGTTCAATTTGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7

Protein Analysis

372

Amino Acids

42.12

Weight (kDa)

5.55

Isoelectric Point (pI)

44.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1027
Acc65I GGTACC 1 cut(s) 991
AccB1I GGYRCC 1 cut(s) 991
AccI GTMKAC 2 cut(s) 498, 839
AciI CCGC 2 cut(s) 63, 818
AclWI GGATC 3 cut(s) 12, 221, 1017
AcoI YGGCCR 1 cut(s) 81
AcsI RAATTY 4 cut(s) 383, 447, 941, 972
AcuI CTGAAG 4 cut(s) 233, 272, 530, 918
AcvI CACGTG 1 cut(s) 432
AfaI GTAC 5 cut(s) 96, 322, 559, 594, 993
AfiI CCNNNNNNNGG 2 cut(s) 59, 65
AflIII ACRYGT 3 cut(s) 429, 560, 595
AgsI TTSAA 7 cut(s) 269, 278, 491, 581, 641, 913, 1106
AjnI CCWGG 5 cut(s) 22, 58, 229, 571, 806
AjuI GAANNNNNNNTTGG 2 cut(s) 165, 197
AluBI AGCT 8 cut(s) 29, 247, 477, 542, 896, 916, 937, 959
AluI AGCT 8 cut(s) 29, 247, 477, 542, 896, 916, 937, 959
Alw21I GWGCWC 2 cut(s) 31, 208
Alw26I GTCTC 3 cut(s) 13, 389, 978
Alw44I GTGCAC 1 cut(s) 204
AlwI GGATC 3 cut(s) 12, 221, 1017
AlwNI CAGNNNCTG 2 cut(s) 869, 1076
AoxI GGCC 2 cut(s) 81, 951
ApaLI GTGCAC 1 cut(s) 204
ApeKI GCWGC 3 cut(s) 13, 247, 474
ApoI RAATTY 4 cut(s) 383, 447, 941, 972
Asp700I GAANNNNTTC 2 cut(s) 273, 543
Asp718I GGTACC 1 cut(s) 991
AsuHPI GGTGA 4 cut(s) 152, 274, 313, 563
BaeGI GKGCMC 1 cut(s) 208
BamHI GGATCC 1 cut(s) 4
BanI GGYRCC 1 cut(s) 991
BanII GRGCYC 1 cut(s) 31
BarI GAAGNNNNNNTAC 2 cut(s) 357, 389
BbrPI CACGTG 1 cut(s) 432
BbsI GAAGAC 1 cut(s) 221
Bbv12I GWGCWC 2 cut(s) 31, 208
BbvCI CCTCAGC 1 cut(s) 45
BbvI GCAGC 3 cut(s) 25, 234, 486
BccI CCATC 4 cut(s) 122, 145, 620, 721
BceAI ACGGC 1 cut(s) 68
BciT130I CCWGG 5 cut(s) 24, 60, 231, 573, 808
BclI TGATCA 2 cut(s) 295, 339
BcoDI GTCTC 3 cut(s) 13, 389, 978
BfaI CTAG 1 cut(s) 110
BfmI CTRYAG 2 cut(s) 472, 678
BfuAI ACCTGC 1 cut(s) 1027
BisI GCNGC 3 cut(s) 14, 248, 475
BlsI GCNGC 3 cut(s) 15, 249, 476
Bme1390I CCNGG 5 cut(s) 24, 60, 231, 573, 808
BmiI GGNNCC 3 cut(s) 6, 57, 993
BmrFI CCNGG 5 cut(s) 24, 60, 231, 573, 808
BmrI ACTGGG 1 cut(s) 256
BmsI GCATC 2 cut(s) 120, 856
BmuI ACTGGG 1 cut(s) 256
BoxI GACNNNNGTC 1 cut(s) 665
BpiI GAAGAC 1 cut(s) 221
BpmI CTGGAG 2 cut(s) 42, 555
Bpu10I CCTNAGC 1 cut(s) 45
BpuEI CTTGAG 2 cut(s) 227, 953
BsaAI YACGTR 2 cut(s) 432, 596
BsaBI GATNNNNATC 1 cut(s) 731
BsaI GGTCTC 1 cut(s) 13
BsaJI CCNNGG 2 cut(s) 252, 1056
BsaXI ACNNNNNCTCC 4 cut(s) 187, 217, 975, 1005
Bsc4I CCNNNNNNNGG 2 cut(s) 59, 65
Bse118I RCCGGY 1 cut(s) 369
Bse1I ACTGG 1 cut(s) 262
Bse8I GATNNNNATC 1 cut(s) 731
BseBI CCWGG 5 cut(s) 24, 60, 231, 573, 808
BseDI CCNNGG 2 cut(s) 252, 1056
BseGI GGATG 1 cut(s) 612
BseJI GATNNNNATC 1 cut(s) 731
BseLI CCNNNNNNNGG 2 cut(s) 59, 65
BseMII CTCAG 3 cut(s) 59, 735, 1083
BseNI ACTGG 1 cut(s) 262
BseRI GAGGAG 1 cut(s) 213
BseSI GKGCMC 1 cut(s) 208
BseX3I CGGCCG 1 cut(s) 81
BseXI GCAGC 3 cut(s) 25, 234, 486
BseYI CCCAGC 1 cut(s) 1021
Bsh1285I CGRYCG 1 cut(s) 84
BshFI GGCC 2 cut(s) 83, 953
BshNI GGYRCC 1 cut(s) 991
BsiEI CGRYCG 1 cut(s) 84
BsiHKAI GWGCWC 2 cut(s) 31, 208
BsiSI CCGG 2 cut(s) 53, 370
BsiWI CGTACG 1 cut(s) 592
BslI CCNNNNNNNGG 2 cut(s) 59, 65
BsmAI GTCTC 3 cut(s) 13, 389, 978
BsmI GAATGC 1 cut(s) 757
BsnI GGCC 2 cut(s) 83, 953
Bso31I GGTCTC 1 cut(s) 13
Bsp1286I GDGCHC 2 cut(s) 31, 208
Bsp1407I TGTACA 1 cut(s) 557
Bsp143I GATC 7 cut(s) 4, 226, 295, 339, 459, 514, 1009
BspACI CCGC 2 cut(s) 63, 818
BspANI GGCC 2 cut(s) 83, 953
BspCNI CTCAG 3 cut(s) 58, 736, 1082
BspHI TCATGA 2 cut(s) 336, 454
BspLI GGNNCC 3 cut(s) 6, 57, 993
BspMAI CTGCAG 1 cut(s) 476
BspMI ACCTGC 1 cut(s) 1027
BspPI GGATC 3 cut(s) 12, 221, 1017
BspQI GCTCTTC 1 cut(s) 549
BspT107I GGYRCC 1 cut(s) 991
BspTNI GGTCTC 1 cut(s) 13
BsrFI RCCGGY 1 cut(s) 369
BsrGI TGTACA 1 cut(s) 557
BsrI ACTGG 1 cut(s) 262
BssAI RCCGGY 1 cut(s) 369
BssECI CCNNGG 2 cut(s) 252, 1056
BssMI GATC 7 cut(s) 4, 226, 295, 339, 459, 514, 1009
BssNAI GTATAC 2 cut(s) 499, 840
BssT1I CCWWGG 2 cut(s) 252, 1056
Bst1107I GTATAC 2 cut(s) 499, 840
Bst2UI CCWGG 5 cut(s) 24, 60, 231, 573, 808
Bst4CI ACNGT 2 cut(s) 557, 803
Bst6I CTCTTC 5 cut(s) 95, 104, 492, 549, 645
BstAUI TGTACA 1 cut(s) 557
BstBAI YACGTR 2 cut(s) 432, 596
BstC8I GCNNGC 2 cut(s) 609, 816
BstDEI CTNAG 5 cut(s) 45, 118, 663, 744, 1069
BstEII GGTNACC 1 cut(s) 256
BstF5I GGATG 1 cut(s) 612
BstKTI GATC 7 cut(s) 7, 229, 298, 342, 462, 517, 1012
BstMAI GTCTC 3 cut(s) 13, 389, 978
BstMBI GATC 7 cut(s) 4, 226, 295, 339, 459, 514, 1009
BstMCI CGRYCG 1 cut(s) 84
BstMWI GCNNNNNNNGC 2 cut(s) 69, 119
BstNI CCWGG 5 cut(s) 24, 60, 231, 573, 808
BstPAI GACNNNNGTC 1 cut(s) 665
BstPI GGTNACC 1 cut(s) 256
BstSCI CCNGG 5 cut(s) 22, 58, 229, 571, 806
BstSFI CTRYAG 2 cut(s) 472, 678
BstSLI GKGCMC 1 cut(s) 208
BstV1I GCAGC 3 cut(s) 25, 234, 486
BstV2I GAAGAC 1 cut(s) 221
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BstZ17I GTATAC 2 cut(s) 499, 840
BstZI CGGCCG 1 cut(s) 81
BsuRI GGCC 2 cut(s) 83, 953
BtsCI GGATG 1 cut(s) 612
BtsIMutI CAGTG 1 cut(s) 742
BveI ACCTGC 1 cut(s) 1027
Cac8I GCNNGC 2 cut(s) 609, 816
CaiI CAGNNNCTG 2 cut(s) 869, 1076
CciI TCATGA 2 cut(s) 336, 454
Cfr10I RCCGGY 1 cut(s) 369
CseI GACGC 1 cut(s) 639
Csp6I GTAC 5 cut(s) 95, 321, 558, 593, 992
CviAII CATG 5 cut(s) 179, 315, 337, 455, 775
CviQI GTAC 5 cut(s) 95, 321, 558, 593, 992
DdeI CTNAG 5 cut(s) 45, 118, 663, 744, 1069
DpnI GATC 7 cut(s) 6, 228, 297, 341, 461, 516, 1011
DpnII GATC 7 cut(s) 4, 226, 295, 339, 459, 514, 1009
EaeI YGGCCR 1 cut(s) 81
EagI CGGCCG 1 cut(s) 81
Eam1104I CTCTTC 5 cut(s) 95, 104, 492, 549, 645
EarI CTCTTC 5 cut(s) 95, 104, 492, 549, 645
EciI GGCGGA 2 cut(s) 78, 833
Ecl136II GAGCTC 1 cut(s) 29
EclXI CGGCCG 1 cut(s) 81
Eco130I CCWWGG 2 cut(s) 252, 1056
Eco24I GRGCYC 1 cut(s) 31
Eco31I GGTCTC 1 cut(s) 13
Eco52I CGGCCG 1 cut(s) 81
Eco53kI GAGCTC 1 cut(s) 29
Eco57I CTGAAG 4 cut(s) 233, 272, 530, 918
Eco72I CACGTG 1 cut(s) 432
Eco91I GGTNACC 1 cut(s) 256
EcoICRI GAGCTC 1 cut(s) 29
EcoO65I GGTNACC 1 cut(s) 256
EcoRII CCWGG 5 cut(s) 22, 58, 229, 571, 806
EcoT14I CCWWGG 2 cut(s) 252, 1056
EcoT38I GRGCYC 1 cut(s) 31
ErhI CCWWGG 2 cut(s) 252, 1056
FaeI CATG 5 cut(s) 182, 318, 340, 458, 778
FalI AAGNNNNNCTT 4 cut(s) 236, 268, 270, 302
FatI CATG 5 cut(s) 178, 314, 336, 454, 774
FbaI TGATCA 2 cut(s) 295, 339
FblI GTMKAC 2 cut(s) 498, 839
Fnu4HI GCNGC 3 cut(s) 14, 248, 475
FokI GGATG 1 cut(s) 599
FriOI GRGCYC 1 cut(s) 31
Fsp4HI GCNGC 3 cut(s) 14, 248, 475
FspBI CTAG 1 cut(s) 110
GluI GCNGC 3 cut(s) 14, 248, 475
GsaI CCCAGC 1 cut(s) 1025
GsuI CTGGAG 2 cut(s) 42, 555
HaeIII GGCC 2 cut(s) 83, 953
HapII CCGG 2 cut(s) 53, 370
HgaI GACGC 1 cut(s) 639
Hin1II CATG 5 cut(s) 182, 318, 340, 458, 778
HincII GTYRAC 2 cut(s) 789, 1066
HindII GTYRAC 2 cut(s) 789, 1066
HindIII AAGCTT 1 cut(s) 914
HinfI GANTC 3 cut(s) 74, 769, 1073
HpaI GTTAAC 2 cut(s) 789, 1066
HpaII CCGG 2 cut(s) 53, 370
HphI GGTGA 4 cut(s) 152, 274, 313, 563
Hpy166II GTNNAC 7 cut(s) 206, 367, 499, 560, 789, 840, 1066
Hpy188I TCNGA 7 cut(s) 213, 291, 519, 834, 1014, 1072, 1115
Hpy188III TCNNGA 6 cut(s) 170, 337, 455, 491, 932, 1097
Hpy8I GTNNAC 7 cut(s) 206, 367, 499, 560, 789, 840, 1066
HpyAV CCTTC 4 cut(s) 167, 296, 529, 790
HpyCH4III ACNGT 2 cut(s) 557, 803
HpyCH4IV ACGT 4 cut(s) 431, 562, 591, 595
HpyCH4V TGCA 5 cut(s) 206, 418, 474, 863, 1036
HpyF10VI GCNNNNNNNGC 2 cut(s) 69, 119
HpyF3I CTNAG 5 cut(s) 45, 118, 663, 744, 1069
HpySE526I ACGT 4 cut(s) 431, 562, 591, 595
Hsp92II CATG 5 cut(s) 182, 318, 340, 458, 778
KpnI GGTACC 1 cut(s) 995
Ksp22I TGATCA 2 cut(s) 295, 339
KspAI GTTAAC 2 cut(s) 789, 1066
Kzo9I GATC 7 cut(s) 4, 226, 295, 339, 459, 514, 1009
LguI GCTCTTC 1 cut(s) 549
LmnI GCTCC 4 cut(s) 26, 34, 61, 574
Lsp1109I GCAGC 3 cut(s) 25, 234, 486
LweI GCATC 2 cut(s) 120, 856
MaeI CTAG 1 cut(s) 110
MaeII ACGT 4 cut(s) 431, 562, 591, 595
MaeIII GTNAC 4 cut(s) 256, 280, 551, 598
MalI GATC 7 cut(s) 6, 228, 297, 341, 461, 516, 1011
MboI GATC 7 cut(s) 4, 226, 295, 339, 459, 514, 1009
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 2 cut(s) 31, 208
MroXI GAANNNNTTC 2 cut(s) 273, 543
MseI TTAA 4 cut(s) 671, 788, 939, 1065
MslI CAYNNNNRTG 1 cut(s) 506
MspI CCGG 2 cut(s) 53, 370
MspR9I CCNGG 5 cut(s) 24, 60, 231, 573, 808
Mva1269I GAATGC 1 cut(s) 757
MvaI CCWGG 5 cut(s) 24, 60, 231, 573, 808
MwoI GCNNNNNNNGC 2 cut(s) 69, 119
NdeII GATC 7 cut(s) 4, 226, 295, 339, 459, 514, 1009
NlaIII CATG 5 cut(s) 182, 318, 340, 458, 778
NlaIV GGNNCC 3 cut(s) 6, 57, 993
NmuCI GTSAC 2 cut(s) 280, 551
PagI TCATGA 2 cut(s) 336, 454
PciSI GCTCTTC 1 cut(s) 549
PctI GAATGC 1 cut(s) 757
PdmI GAANNNNTTC 2 cut(s) 273, 543
PfeI GAWTC 3 cut(s) 74, 769, 1073
Pfl23II CGTACG 1 cut(s) 592
PfoI TCCNGGA 2 cut(s) 571, 806
PkrI GCNGC 3 cut(s) 15, 249, 476
PmaCI CACGTG 1 cut(s) 432
PmlI CACGTG 1 cut(s) 432
Ppu21I YACGTR 2 cut(s) 432, 596
PshAI GACNNNNGTC 1 cut(s) 665
Psp124BI GAGCTC 1 cut(s) 31
Psp6I CCWGG 5 cut(s) 22, 58, 229, 571, 806
PspCI CACGTG 1 cut(s) 432
PspEI GGTNACC 1 cut(s) 256
PspFI CCCAGC 1 cut(s) 1021
PspGI CCWGG 5 cut(s) 22, 58, 229, 571, 806
PspLI CGTACG 1 cut(s) 592
PspN4I GGNNCC 3 cut(s) 6, 57, 993
PstI CTGCAG 1 cut(s) 476
PstNI CAGNNNCTG 2 cut(s) 869, 1076
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 5 cut(s) 96, 322, 559, 594, 993
RsaNI GTAC 5 cut(s) 95, 321, 558, 593, 992
RseI CAYNNNNRTG 1 cut(s) 506
SacI GAGCTC 1 cut(s) 31
SapI GCTCTTC 1 cut(s) 549
SaqAI TTAA 4 cut(s) 671, 788, 939, 1065
SatI GCNGC 3 cut(s) 14, 248, 475
Sau3AI GATC 7 cut(s) 4, 226, 295, 339, 459, 514, 1009
ScrFI CCNGG 5 cut(s) 24, 60, 231, 573, 808
SduI GDGCHC 2 cut(s) 31, 208
SfaNI GCATC 2 cut(s) 120, 856
SfcI CTRYAG 2 cut(s) 472, 678
SmiMI CAYNNNNRTG 1 cut(s) 506
SmlI CTYRAG 2 cut(s) 242, 932
SmoI CTYRAG 2 cut(s) 242, 932
SsiI CCGC 2 cut(s) 63, 818
SspMI CTAG 1 cut(s) 110
SstI GAGCTC 1 cut(s) 31
StyD4I CCNGG 5 cut(s) 22, 58, 229, 571, 806
StyI CCWWGG 2 cut(s) 252, 1056
TaaI ACNGT 2 cut(s) 557, 803
TaiI ACGT 4 cut(s) 434, 565, 594, 598
TaqI TCGA 3 cut(s) 513, 825, 948
TatI WGTACW 1 cut(s) 557
TfiI GAWTC 3 cut(s) 74, 769, 1073
Tru1I TTAA 4 cut(s) 671, 788, 939, 1065
Tru9I TTAA 4 cut(s) 671, 788, 939, 1065
TscAI CASTG 1 cut(s) 742
TseFI GTSAC 2 cut(s) 280, 551
TseI GCWGC 3 cut(s) 13, 247, 474
Tsp45I GTSAC 2 cut(s) 280, 551
TspDTI ATGAA 5 cut(s) 227, 440, 540, 548, 934
TspGWI ACGGA 2 cut(s) 673, 806
TspRI CASTG 1 cut(s) 742
VneI GTGCAC 1 cut(s) 204
XapI RAATTY 4 cut(s) 383, 447, 941, 972
XcmI CCANNNNNNNNNTGG 1 cut(s) 724
XmiI GTMKAC 2 cut(s) 498, 839
XmnI GAANNNNTTC 2 cut(s) 273, 543
XspI CTAG 1 cut(s) 110
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.