Rw0G006560

prohibitin homologues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00245
OG0007435
Physical Location & Seq
Reverse (-)
213774 .. 216731
2958 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G006560.1

Sequence Viewer

Length: 1080 bp
ATGTACTCACAGCAGCAGAGACAAACAGCTCCACAGCCTCGCCCTCGCCCTCAGAATCAAGACGGCGGCGGCGATTTCTCGGCCGTTTGCTTCGTTCTCTTCCTGTTCCTTGCCGTCGCCATTTTCACTTTGGTAATCAGCGGTCTGCACCAAGTTCCGGAAGGTCATGTTGGGGTATATTGGAGAGGAGGTGCTCTTCTGAAGACTATTACAGATCCAGGGTTTCGTCTCATGATTCCCCTGATAACCGACTTTGAGCCTGTTCAAGTGACCCTTCAGACTGATCAGGTGAAGGATATTCCATGTGGTACAAAGGGGGGTGTCGTGATTAACTTTGAGAAGATAGAGGTTGTTAACCGGCTTCGCAAGGAATTTGTATACGAGACACTTCTCAATTATGGAGTGAAGTATGACCGTACATGGATATATGACAAAATTCATCATGAGATCAATCAGTTCTGCAGCTCACATTCACTTCAAGATGTCTACATTGATGTGTTCGATCAGATTGATGAAAAGATGAAAGAAGCTCTTCAGGGTGATTGCACACGTTATGCTCCAGGTATTGAAATTTTCAGTGTCCGTGTCACAAAGCCGACTATCCCAGATAGTGTAAGACATAACTTTGAGCAGATGGAGGAGCAACGTACCAAGGTTCTAATTGCTATTGAGAGACAGAGAGTGGTGGAGAAAGAGGCAGAAACCGAGAAGAAGATAGCTATAAGTGAAGCCGAGAAGAATGCCAATGTGAGTAAGATTCTCATGGAGCAAAAGTTGATGGAGAAGGACAGTTCCAGGAGGCAGCAAGAAATTGAAAATGACATGTATCTTGCTCGGGAAAAGAGTGTAGCAGATGCTGATTTCTACAAAGTCATGAAAGAGGCTGAAGCAAACAGACTGAAGCTTACTCCGCAGTTCCTTGAGCTCAAATTCATTGAGGCTATTGCTGACAATACGAAAGTTTTCTTTGGGGACAAGGTACCAAATATGGTTTTGGATCAGAGGTTGCTGGGGAACTTCTTAAAGGTTTCCAGAGAGTTGTCGGGAGATGTGGCCAGGGAAGGAAGTGCAGCATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7

Protein Analysis

359

Amino Acids

41.15

Weight (kDa)

5.7

Isoelectric Point (pI)

37.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 51 - 232 1.4e-27 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 979
AccB1I GGYRCC 1 cut(s) 979
AccI GTMKAC 2 cut(s) 378, 486
AccIII TCCGGA 1 cut(s) 157
AciI CCGC 4 cut(s) 66, 69, 141, 911
AclWI GGATC 2 cut(s) 209, 1005
AcoI YGGCCR 2 cut(s) 81, 1053
AcsI RAATTY 4 cut(s) 371, 435, 570, 929
AcuI CTGAAG 5 cut(s) 221, 260, 518, 906, 920
AfaI GTAC 5 cut(s) 5, 310, 418, 649, 981
AfiI CCNNNNNNNGG 1 cut(s) 157
AflIII ACRYGT 2 cut(s) 548, 822
AgsI TTSAA 4 cut(s) 266, 479, 569, 815
AjnI CCWGG 4 cut(s) 217, 559, 794, 1055
AjuI GAANNNNNNNTTGG 2 cut(s) 153, 185
AluBI AGCT 6 cut(s) 29, 465, 530, 719, 904, 925
AluI AGCT 6 cut(s) 29, 465, 530, 719, 904, 925
Alw21I GWGCWC 2 cut(s) 196, 927
Alw26I GTCTC 4 cut(s) 13, 233, 377, 667
AlwI GGATC 2 cut(s) 209, 1005
AlwNI CAGNNNCTG 1 cut(s) 857
Ama87I CYCGRG 1 cut(s) 834
Aor13HI TCCGGA 1 cut(s) 157
AoxI GGCC 2 cut(s) 81, 1053
ApeKI GCWGC 4 cut(s) 13, 462, 802, 1070
ApoI RAATTY 4 cut(s) 371, 435, 570, 929
Asp700I GAANNNNTTC 2 cut(s) 531, 962
Asp718I GGTACC 1 cut(s) 979
AsuHPI GGTGA 2 cut(s) 301, 551
AvaI CYCGRG 1 cut(s) 834
BalI TGGCCA 1 cut(s) 1055
BanI GGYRCC 1 cut(s) 979
BanII GRGCYC 1 cut(s) 927
BbsI GAAGAC 1 cut(s) 209
Bbv12I GWGCWC 2 cut(s) 196, 927
BbvI GCAGC 3 cut(s) 25, 474, 814
BccI CCATC 2 cut(s) 628, 772
BceAI ACGGC 3 cut(s) 68, 79, 98
BcgI CGANNNNNNTGC 2 cut(s) 722, 756
BciT130I CCWGG 4 cut(s) 219, 561, 796, 1057
BclI TGATCA 1 cut(s) 283
BcoDI GTCTC 4 cut(s) 13, 233, 377, 667
BfmI CTRYAG 1 cut(s) 460
BisI GCNGC 6 cut(s) 14, 67, 70, 463, 803, 1071
BlsI GCNGC 6 cut(s) 15, 68, 71, 464, 804, 1072
Bme1390I CCNGG 4 cut(s) 219, 561, 796, 1057
BmeT110I CYCGRG 1 cut(s) 834
BmiI GGNNCC 1 cut(s) 981
BmrFI CCNGG 4 cut(s) 219, 561, 796, 1057
BmsI GCATC 1 cut(s) 844
BpiI GAAGAC 1 cut(s) 209
BpmI CTGGAG 1 cut(s) 543
BpuEI CTTGAG 1 cut(s) 941
BsaJI CCNNGG 3 cut(s) 218, 651, 1056
BsaWI WCCGGW 1 cut(s) 157
BsaXI ACNNNNNCTCC 4 cut(s) 175, 205, 758, 788
Bsc4I CCNNNNNNNGG 1 cut(s) 157
Bse118I RCCGGY 1 cut(s) 357
BseAI TCCGGA 1 cut(s) 157
BseBI CCWGG 4 cut(s) 219, 561, 796, 1057
BseDI CCNNGG 3 cut(s) 218, 651, 1056
BseLI CCNNNNNNNGG 1 cut(s) 157
BseMII CTCAG 1 cut(s) 65
BseRI GAGGAG 2 cut(s) 201, 653
BseX3I CGGCCG 1 cut(s) 81
BseXI GCAGC 3 cut(s) 25, 474, 814
BseYI CCCAGC 1 cut(s) 1009
BsgI GTGCAG 1 cut(s) 131
Bsh1285I CGRYCG 1 cut(s) 84
BshFI GGCC 2 cut(s) 83, 1055
BshNI GGYRCC 1 cut(s) 979
BsiEI CGRYCG 1 cut(s) 84
BsiHKAI GWGCWC 2 cut(s) 196, 927
BsiHKCI CYCGRG 1 cut(s) 834
BsiSI CCGG 2 cut(s) 158, 358
BslFI GGGAC 1 cut(s) 986
BslI CCNNNNNNNGG 1 cut(s) 157
BsmAI GTCTC 4 cut(s) 13, 233, 377, 667
BsmBI CGTCTC 1 cut(s) 233
BsmFI GGGAC 1 cut(s) 986
BsmI GAATGC 1 cut(s) 745
BsnI GGCC 2 cut(s) 83, 1055
BsoBI CYCGRG 1 cut(s) 834
Bsp1286I GDGCHC 2 cut(s) 196, 927
Bsp13I TCCGGA 1 cut(s) 157
Bsp143I GATC 5 cut(s) 214, 283, 447, 502, 997
BspACI CCGC 4 cut(s) 66, 69, 141, 911
BspANI GGCC 2 cut(s) 83, 1055
BspCNI CTCAG 1 cut(s) 64
BspEI TCCGGA 1 cut(s) 157
BspHI TCATGA 3 cut(s) 231, 442, 873
BspLI GGNNCC 1 cut(s) 981
BspMAI CTGCAG 1 cut(s) 464
BspPI GGATC 2 cut(s) 209, 1005
BspQI GCTCTTC 2 cut(s) 201, 537
BspT107I GGYRCC 1 cut(s) 979
BsrFI RCCGGY 1 cut(s) 357
BssAI RCCGGY 1 cut(s) 357
BssECI CCNNGG 3 cut(s) 218, 651, 1056
BssMI GATC 5 cut(s) 214, 283, 447, 502, 997
BssNAI GTATAC 1 cut(s) 379
BssT1I CCWWGG 1 cut(s) 651
Bst1107I GTATAC 1 cut(s) 379
Bst2UI CCWGG 4 cut(s) 219, 561, 796, 1057
Bst4CI ACNGT 2 cut(s) 416, 791
Bst6I CTCTTC 3 cut(s) 104, 201, 537
BstDEI CTNAG 1 cut(s) 51
BstKTI GATC 5 cut(s) 217, 286, 450, 505, 1000
BstMAI GTCTC 4 cut(s) 13, 233, 377, 667
BstMBI GATC 5 cut(s) 214, 283, 447, 502, 997
BstMCI CGRYCG 1 cut(s) 84
BstMWI GCNNNNNNNGC 1 cut(s) 910
BstNI CCWGG 4 cut(s) 219, 561, 796, 1057
BstNSI RCATGY 1 cut(s) 826
BstSCI CCNGG 4 cut(s) 217, 559, 794, 1055
BstSFI CTRYAG 1 cut(s) 460
BstV1I GCAGC 3 cut(s) 25, 474, 814
BstV2I GAAGAC 1 cut(s) 209
BstX2I RGATCY 1 cut(s) 214
BstYI RGATCY 1 cut(s) 214
BstZ17I GTATAC 1 cut(s) 379
BstZI CGGCCG 1 cut(s) 81
BsuRI GGCC 2 cut(s) 83, 1055
BtsIMutI CAGTG 1 cut(s) 583
CaiI CAGNNNCTG 1 cut(s) 857
CciI TCATGA 3 cut(s) 231, 442, 873
Cfr10I RCCGGY 1 cut(s) 357
Csp6I GTAC 5 cut(s) 4, 309, 417, 648, 980
CviAII CATG 8 cut(s) 167, 232, 303, 420, 443, 763, 823, 874
CviQI GTAC 5 cut(s) 4, 309, 417, 648, 980
DdeI CTNAG 1 cut(s) 51
DpnI GATC 5 cut(s) 216, 285, 449, 504, 999
DpnII GATC 5 cut(s) 214, 283, 447, 502, 997
EaeI YGGCCR 2 cut(s) 81, 1053
EagI CGGCCG 1 cut(s) 81
Eam1104I CTCTTC 3 cut(s) 104, 201, 537
EarI CTCTTC 3 cut(s) 104, 201, 537
Ecl136II GAGCTC 1 cut(s) 925
EclXI CGGCCG 1 cut(s) 81
Eco130I CCWWGG 1 cut(s) 651
Eco24I GRGCYC 1 cut(s) 927
Eco52I CGGCCG 1 cut(s) 81
Eco53kI GAGCTC 1 cut(s) 925
Eco57I CTGAAG 5 cut(s) 221, 260, 518, 906, 920
Eco88I CYCGRG 1 cut(s) 834
EcoICRI GAGCTC 1 cut(s) 925
EcoRII CCWGG 4 cut(s) 217, 559, 794, 1055
EcoT14I CCWWGG 1 cut(s) 651
EcoT38I GRGCYC 1 cut(s) 927
ErhI CCWWGG 1 cut(s) 651
Esp3I CGTCTC 1 cut(s) 233
FaeI CATG 8 cut(s) 170, 235, 306, 423, 446, 766, 826, 877
FalI AAGNNNNNCTT 4 cut(s) 258, 290, 516, 548
FaqI GGGAC 1 cut(s) 986
FatI CATG 8 cut(s) 166, 231, 302, 419, 442, 762, 822, 873
FbaI TGATCA 1 cut(s) 283
FblI GTMKAC 2 cut(s) 378, 486
Fnu4HI GCNGC 6 cut(s) 14, 67, 70, 463, 803, 1071
FriOI GRGCYC 1 cut(s) 927
Fsp4HI GCNGC 6 cut(s) 14, 67, 70, 463, 803, 1071
GluI GCNGC 6 cut(s) 14, 67, 70, 463, 803, 1071
GsaI CCCAGC 1 cut(s) 1013
GsuI CTGGAG 1 cut(s) 543
HaeIII GGCC 2 cut(s) 83, 1055
HapII CCGG 2 cut(s) 158, 358
Hin1II CATG 8 cut(s) 170, 235, 306, 423, 446, 766, 826, 877
HincII GTYRAC 1 cut(s) 355
HindII GTYRAC 1 cut(s) 355
HindIII AAGCTT 1 cut(s) 902
HinfI GANTC 3 cut(s) 55, 235, 757
HpaI GTTAAC 1 cut(s) 355
HpaII CCGG 2 cut(s) 158, 358
HphI GGTGA 2 cut(s) 301, 551
Hpy166II GTNNAC 3 cut(s) 355, 379, 487
Hpy188I TCNGA 5 cut(s) 54, 201, 279, 507, 1002
Hpy8I GTNNAC 3 cut(s) 355, 379, 487
Hpy99I CGWCG 1 cut(s) 119
HpyAV CCTTC 5 cut(s) 155, 284, 286, 778, 1055
HpyCH4III ACNGT 2 cut(s) 416, 791
HpyCH4IV ACGT 2 cut(s) 550, 646
HpyCH4V TGCA 4 cut(s) 148, 462, 546, 1070
HpyF10VI GCNNNNNNNGC 1 cut(s) 910
HpyF3I CTNAG 1 cut(s) 51
HpySE526I ACGT 2 cut(s) 550, 646
Hsp92II CATG 8 cut(s) 170, 235, 306, 423, 446, 766, 826, 877
Kpn2I TCCGGA 1 cut(s) 157
KpnI GGTACC 1 cut(s) 983
Ksp22I TGATCA 1 cut(s) 283
KspAI GTTAAC 1 cut(s) 355
Kzo9I GATC 5 cut(s) 214, 283, 447, 502, 997
LguI GCTCTTC 2 cut(s) 201, 537
LmnI GCTCC 4 cut(s) 34, 562, 640, 766
Lsp1109I GCAGC 3 cut(s) 25, 474, 814
LweI GCATC 1 cut(s) 844
MaeII ACGT 2 cut(s) 550, 646
MaeIII GTNAC 2 cut(s) 268, 586
MalI GATC 5 cut(s) 216, 285, 449, 504, 999
MboI GATC 5 cut(s) 214, 283, 447, 502, 997
MboII GAAGA 8 cut(s) 91, 188, 214, 352, 524, 721, 724, 748
MflI RGATCY 1 cut(s) 214
MhlI GDGCHC 2 cut(s) 196, 927
MlsI TGGCCA 1 cut(s) 1055
MluCI AATT 7 cut(s) 371, 394, 435, 570, 660, 810, 929
MluNI TGGCCA 1 cut(s) 1055
Mox20I TGGCCA 1 cut(s) 1055
MroI TCCGGA 1 cut(s) 157
MroXI GAANNNNTTC 2 cut(s) 531, 962
MscI TGGCCA 1 cut(s) 1055
MseI TTAA 3 cut(s) 330, 354, 1022
MslI CAYNNNNRTG 1 cut(s) 494
Msp20I TGGCCA 1 cut(s) 1055
MspA1I CMGCKG 1 cut(s) 141
MspI CCGG 2 cut(s) 158, 358
MspR9I CCNGG 4 cut(s) 219, 561, 796, 1057
Mva1269I GAATGC 1 cut(s) 745
MvaI CCWGG 4 cut(s) 219, 561, 796, 1057
MwoI GCNNNNNNNGC 1 cut(s) 910
NdeII GATC 5 cut(s) 214, 283, 447, 502, 997
NlaIII CATG 8 cut(s) 170, 235, 306, 423, 446, 766, 826, 877
NlaIV GGNNCC 1 cut(s) 981
NmeAIII GCCGAG 2 cut(s) 59, 757
NmuCI GTSAC 2 cut(s) 268, 586
NspI RCATGY 1 cut(s) 826
PagI TCATGA 3 cut(s) 231, 442, 873
PciI ACATGT 1 cut(s) 822
PciSI GCTCTTC 2 cut(s) 201, 537
PcsI WCGNNNNNNNCGW 1 cut(s) 69
PctI GAATGC 1 cut(s) 745
PdmI GAANNNNTTC 2 cut(s) 531, 962
PfeI GAWTC 3 cut(s) 55, 235, 757
PfoI TCCNGGA 1 cut(s) 794
PkrI GCNGC 6 cut(s) 15, 68, 71, 464, 804, 1072
PscI ACATGT 1 cut(s) 822
Psp124BI GAGCTC 1 cut(s) 927
Psp6I CCWGG 4 cut(s) 217, 559, 794, 1055
PspFI CCCAGC 1 cut(s) 1009
PspGI CCWGG 4 cut(s) 217, 559, 794, 1055
PspN4I GGNNCC 1 cut(s) 981
PstI CTGCAG 1 cut(s) 464
PstNI CAGNNNCTG 1 cut(s) 857
PsuI RGATCY 1 cut(s) 214
RsaI GTAC 5 cut(s) 5, 310, 418, 649, 981
RsaNI GTAC 5 cut(s) 4, 309, 417, 648, 980
RseI CAYNNNNRTG 1 cut(s) 494
SacI GAGCTC 1 cut(s) 927
SapI GCTCTTC 2 cut(s) 201, 537
SaqAI TTAA 3 cut(s) 330, 354, 1022
SatI GCNGC 6 cut(s) 14, 67, 70, 463, 803, 1071
Sau3AI GATC 5 cut(s) 214, 283, 447, 502, 997
ScrFI CCNGG 4 cut(s) 219, 561, 796, 1057
SduI GDGCHC 2 cut(s) 196, 927
SfaNI GCATC 1 cut(s) 844
SfcI CTRYAG 1 cut(s) 460
SmiMI CAYNNNNRTG 1 cut(s) 494
SmlI CTYRAG 1 cut(s) 920
SmoI CTYRAG 1 cut(s) 920
Sse9I AATT 7 cut(s) 371, 394, 435, 570, 660, 810, 929
SsiI CCGC 4 cut(s) 66, 69, 141, 911
SstI GAGCTC 1 cut(s) 927
StyD4I CCNGG 4 cut(s) 217, 559, 794, 1055
StyI CCWWGG 1 cut(s) 651
TaaI ACNGT 2 cut(s) 416, 791
TaiI ACGT 2 cut(s) 553, 649
TaqI TCGA 1 cut(s) 501
TasI AATT 7 cut(s) 371, 394, 435, 570, 660, 810, 929
TatI WGTACW 1 cut(s) 3
TauI GCSGC 2 cut(s) 69, 72
TfiI GAWTC 3 cut(s) 55, 235, 757
Tru1I TTAA 3 cut(s) 330, 354, 1022
Tru9I TTAA 3 cut(s) 330, 354, 1022
TscAI CASTG 1 cut(s) 583
TseFI GTSAC 2 cut(s) 268, 586
TseI GCWGC 4 cut(s) 13, 462, 802, 1070
Tsp45I GTSAC 2 cut(s) 268, 586
TspDTI ATGAA 5 cut(s) 428, 528, 536, 890, 922
TspGWI ACGGA 1 cut(s) 572
TspRI CASTG 1 cut(s) 583
XapI RAATTY 4 cut(s) 371, 435, 570, 929
XceI RCATGY 1 cut(s) 826
XcmI CCANNNNNNNNNTGG 1 cut(s) 127
XmiI GTMKAC 2 cut(s) 378, 486
XmnI GAANNNNTTC 2 cut(s) 531, 962
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.