Rh4DG366700

prohibitin homologues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0007435
Physical Location & Seq
Reverse (-)
58686754 .. 58690435
3682 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG366700.1

Sequence Viewer

Length: 1152 bp
ATGGATCAGCAGCAGAGAGCAGGAGCTCCTCAGTATCGTCCTCCGCCTCCCGGTCAAGGCGGCGGCGGCGGAGAATCCTCCGCCATTCTCGTCGTCCTCGTCGGTTTCCTCGCCATCTTCGCTATGGTGGTGCTTCCATCAATATCAACTATTAGCAATAGCTTTTCCATCCTGCACCAAGTCCCTGAAGGTCATGTTGGTGTATATTGGAGAGGGGGTGCTCTTCTAAAGACTATTACTGATCCAGGGTTTCATCTCAAGTTGCCTCTGATAACACAGTATGAACCTGTTCAAGTGACCCTTCAGACTGATCAAGTGAGGGATATTCCTTGCGGCACAAAAGGGGGTGTCATGATCAACTTTGAAAAGATTGAGGTTGTAAACAGGCTACGTAAGGAATATGTGTATGAGACACTTCTAAACTATGGTGTGCACTATGACAACACATGGATATATGACAAAATTCATCACGAGATCAATCAGTTCTGCAGCTCGAATTCTCTCCAAGATGTCTATATTGATGTGTTTGATCAGATTGATGAGAAGATGAAAGACGCTCTCCAGGTTGACTGTACCAAATATGCCCCAGGTATTGAAATTATCAATGTGCGTGTCACAAAGCCGAAGATCCCTGATAGTATCAGACGGAACTTTGAGCAGATGGAGGAGGAGCGCACCAAGGTCTTAATTGCTATAGAGAGACAGAGGGTGGTGGAGAAAGAAGCAGAAACCAAGAAAAAGATGGCTATCAGTGAAGCCGAGAAGAATGCCAACGTCAGTAAGATTCTCATGGAACAAAAGCTGATGGAGAAGGACAGTTCCAGGAGGCAGGAAGAAATCGAAAATGCCATGTATCTAGCTCGGGAGAAGAGTCTTGCAGATGCTGATTTCTACAAAGTAATGAGAGAGGCCGAAGCAAACAAGTTGAAGCTCACTCCACAGTTCCTTGAGCTTAAGTTTATCGAGGCCATTGCTGATAATACAAAAATCTTCTTTGGGGACAAGGTACCCAATATGGTTCTAGATCAGAGGTTGCTGGGGAACTTTTTGAAGGTTTCCAGAGAGGTGGCCAAAGATATATCCCAAAAAACGTCTGGTGAAGCTATTGCGGACGATGGAGAAGCTGGTAACCCTGAAGTTGAATATGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7

Protein Analysis

383

Amino Acids

43.32

Weight (kDa)

5.42

Isoelectric Point (pI)

40.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 60 - 241 1.3e-28 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1006
AccB1I GGYRCC 1 cut(s) 1006
AciI CCGC 8 cut(s) 44, 60, 63, 66, 69, 81, 333, 1109
AclWI GGATC 3 cut(s) 12, 236, 622
AcoI YGGCCR 1 cut(s) 1068
AcsI RAATTY 2 cut(s) 462, 496
AcuI CTGAAG 2 cut(s) 207, 287
AfaI GTAC 2 cut(s) 574, 1008
AfiI CCNNNNNNNGG 2 cut(s) 50, 56
AflII CTTAAG 1 cut(s) 953
AgsI TTSAA 6 cut(s) 293, 365, 596, 928, 1051, 1142
AjnI CCWGG 4 cut(s) 244, 561, 586, 821
AjuI GAANNNNNNNTTGG 2 cut(s) 180, 212
AluBI AGCT 9 cut(s) 26, 162, 492, 802, 860, 931, 952, 1103, 1124
AluI AGCT 9 cut(s) 26, 162, 492, 802, 860, 931, 952, 1103, 1124
Alw21I GWGCWC 3 cut(s) 28, 223, 435
Alw26I GTCTC 2 cut(s) 404, 694
Alw44I GTGCAC 1 cut(s) 431
AlwI GGATC 3 cut(s) 12, 236, 622
AlwNI CAGNNNCTG 1 cut(s) 884
Ama87I CYCGRG 1 cut(s) 861
AoxI GGCC 3 cut(s) 909, 966, 1068
ApaLI GTGCAC 1 cut(s) 431
ApeKI GCWGC 2 cut(s) 10, 489
ApoI RAATTY 2 cut(s) 462, 496
Asp700I GAANNNNTTC 1 cut(s) 288
Asp718I GGTACC 1 cut(s) 1006
AspLEI GCGC 1 cut(s) 675
AsuC2I CCSGG 1 cut(s) 51
AsuHPI GGTGA 1 cut(s) 1109
AvaI CYCGRG 1 cut(s) 861
BaeGI GKGCMC 1 cut(s) 435
BalI TGGCCA 1 cut(s) 1070
BanI GGYRCC 1 cut(s) 1006
BanII GRGCYC 1 cut(s) 28
BauI CACGAG 1 cut(s) 470
Bbv12I GWGCWC 3 cut(s) 28, 223, 435
BbvI GCAGC 2 cut(s) 22, 501
BccI CCATC 7 cut(s) 122, 145, 176, 655, 736, 799, 1109
BcgI CGANNNNNNTGC 4 cut(s) 749, 783, 953, 987
BciT130I CCWGG 4 cut(s) 246, 563, 588, 823
BclI TGATCA 3 cut(s) 310, 354, 529
BcnI CCSGG 1 cut(s) 51
BcoDI GTCTC 2 cut(s) 404, 694
BfaI CTAG 2 cut(s) 857, 1022
BfmI CTRYAG 2 cut(s) 487, 693
BfrI CTTAAG 1 cut(s) 953
BisI GCNGC 6 cut(s) 11, 61, 64, 67, 334, 490
BlsI GCNGC 6 cut(s) 12, 62, 65, 68, 335, 491
Bme1390I CCNGG 5 cut(s) 51, 246, 563, 588, 823
BmeT110I CYCGRG 1 cut(s) 861
BmiI GGNNCC 1 cut(s) 1008
BmrFI CCNGG 5 cut(s) 51, 246, 563, 588, 823
BmsI GCATC 1 cut(s) 871
BpmI CTGGAG 1 cut(s) 545
BpuEI CTTGAG 2 cut(s) 242, 968
BpuMI CCSGG 1 cut(s) 51
BsaAI YACGTR 1 cut(s) 392
BsaBI GATNNNNATC 1 cut(s) 746
BsaJI CCNNGG 3 cut(s) 245, 586, 678
BsaXI ACNNNNNCTCC 2 cut(s) 202, 232
Bsc4I CCNNNNNNNGG 2 cut(s) 50, 56
Bse3DI GCAATG 1 cut(s) 969
Bse8I GATNNNNATC 1 cut(s) 746
BseBI CCWGG 4 cut(s) 246, 563, 588, 823
BseDI CCNNGG 3 cut(s) 245, 586, 678
BseGI GGATG 1 cut(s) 168
BseJI GATNNNNATC 1 cut(s) 746
BseLI CCNNNNNNNGG 2 cut(s) 50, 56
BseMI GCAATG 1 cut(s) 969
BseMII CTCAG 1 cut(s) 44
BseRI GAGGAG 3 cut(s) 18, 680, 683
BseSI GKGCMC 1 cut(s) 435
BseXI GCAGC 2 cut(s) 22, 501
BseYI CCCAGC 1 cut(s) 1036
BsgI GTGCAG 1 cut(s) 158
BshFI GGCC 3 cut(s) 911, 968, 1070
BshNI GGYRCC 1 cut(s) 1006
BsiHKAI GWGCWC 3 cut(s) 28, 223, 435
BsiHKCI CYCGRG 1 cut(s) 861
BsiSI CCGG 1 cut(s) 51
BslFI GGGAC 2 cut(s) 167, 1013
BslI CCNNNNNNNGG 2 cut(s) 50, 56
BsmAI GTCTC 2 cut(s) 404, 694
BsmFI GGGAC 2 cut(s) 167, 1013
BsmI GAATGC 1 cut(s) 772
BsnI GGCC 3 cut(s) 911, 968, 1070
BsoBI CYCGRG 1 cut(s) 861
Bsp1286I GDGCHC 3 cut(s) 28, 223, 435
Bsp143I GATC 8 cut(s) 4, 241, 310, 354, 474, 529, 627, 1024
BspACI CCGC 8 cut(s) 44, 60, 63, 66, 69, 81, 333, 1109
BspANI GGCC 3 cut(s) 911, 968, 1070
BspCNI CTCAG 1 cut(s) 43
BspHI TCATGA 1 cut(s) 351
BspLI GGNNCC 1 cut(s) 1008
BspMAI CTGCAG 1 cut(s) 491
BspPI GGATC 3 cut(s) 12, 236, 622
BspQI GCTCTTC 1 cut(s) 228
BspT107I GGYRCC 1 cut(s) 1006
BspTI CTTAAG 1 cut(s) 953
BsrDI GCAATG 1 cut(s) 969
BssECI CCNNGG 3 cut(s) 245, 586, 678
BssMI GATC 8 cut(s) 4, 241, 310, 354, 474, 529, 627, 1024
BssSI CACGAG 1 cut(s) 470
BssT1I CCWWGG 1 cut(s) 678
Bst2BI CACGAG 1 cut(s) 470
Bst2UI CCWGG 4 cut(s) 246, 563, 588, 823
Bst4CI ACNGT 4 cut(s) 279, 572, 818, 942
Bst6I CTCTTC 2 cut(s) 228, 863
BstAFI CTTAAG 1 cut(s) 953
BstBAI YACGTR 1 cut(s) 392
BstDEI CTNAG 1 cut(s) 30
BstEII GGTNACC 1 cut(s) 1127
BstF5I GGATG 1 cut(s) 168
BstHHI GCGC 1 cut(s) 675
BstKTI GATC 8 cut(s) 7, 244, 313, 357, 477, 532, 630, 1027
BstMAI GTCTC 2 cut(s) 404, 694
BstMBI GATC 8 cut(s) 4, 241, 310, 354, 474, 529, 627, 1024
BstMWI GCNNNNNNNGC 2 cut(s) 66, 119
BstNI CCWGG 4 cut(s) 246, 563, 588, 823
BstPI GGTNACC 1 cut(s) 1127
BstSCI CCNGG 5 cut(s) 49, 244, 561, 586, 821
BstSFI CTRYAG 2 cut(s) 487, 693
BstSLI GKGCMC 1 cut(s) 435
BstSNI TACGTA 1 cut(s) 392
BstV1I GCAGC 2 cut(s) 22, 501
BstX2I RGATCY 1 cut(s) 627
BstXI CCANNNNNNTGG 1 cut(s) 1066
BstYI RGATCY 1 cut(s) 627
BsuRI GGCC 3 cut(s) 911, 968, 1070
BtsCI GGATG 1 cut(s) 168
BtsIMutI CAGTG 1 cut(s) 757
CaiI CAGNNNCTG 1 cut(s) 884
CciI TCATGA 1 cut(s) 351
CfoI GCGC 1 cut(s) 675
CseI GACGC 1 cut(s) 563
Csp6I GTAC 2 cut(s) 573, 1007
CviAII CATG 5 cut(s) 194, 352, 447, 790, 850
CviQI GTAC 2 cut(s) 573, 1007
DdeI CTNAG 1 cut(s) 30
DpnI GATC 8 cut(s) 6, 243, 312, 356, 476, 531, 629, 1026
DpnII GATC 8 cut(s) 4, 241, 310, 354, 474, 529, 627, 1024
EaeI YGGCCR 1 cut(s) 1068
Eam1104I CTCTTC 2 cut(s) 228, 863
EarI CTCTTC 2 cut(s) 228, 863
EciI GGCGGA 3 cut(s) 33, 70, 84
Ecl136II GAGCTC 1 cut(s) 26
Eco105I TACGTA 1 cut(s) 392
Eco130I CCWWGG 1 cut(s) 678
Eco24I GRGCYC 1 cut(s) 28
Eco53kI GAGCTC 1 cut(s) 26
Eco57I CTGAAG 2 cut(s) 207, 287
Eco88I CYCGRG 1 cut(s) 861
Eco91I GGTNACC 1 cut(s) 1127
EcoICRI GAGCTC 1 cut(s) 26
EcoO65I GGTNACC 1 cut(s) 1127
EcoRI GAATTC 1 cut(s) 496
EcoRII CCWGG 4 cut(s) 244, 561, 586, 821
EcoT14I CCWWGG 1 cut(s) 678
EcoT38I GRGCYC 1 cut(s) 28
ErhI CCWWGG 1 cut(s) 678
FaeI CATG 5 cut(s) 197, 355, 450, 793, 853
FalI AAGNNNNNCTT 2 cut(s) 285, 317
FaqI GGGAC 2 cut(s) 167, 1013
FatI CATG 5 cut(s) 193, 351, 446, 789, 849
FbaI TGATCA 3 cut(s) 310, 354, 529
Fnu4HI GCNGC 6 cut(s) 11, 61, 64, 67, 334, 490
FokI GGATG 1 cut(s) 155
FriOI GRGCYC 1 cut(s) 28
Fsp4HI GCNGC 6 cut(s) 11, 61, 64, 67, 334, 490
FspBI CTAG 2 cut(s) 857, 1022
GlaI GCGC 1 cut(s) 674
GluI GCNGC 6 cut(s) 11, 61, 64, 67, 334, 490
GsaI CCCAGC 1 cut(s) 1040
GsuI CTGGAG 1 cut(s) 545
HaeIII GGCC 3 cut(s) 911, 968, 1070
HapII CCGG 1 cut(s) 51
HgaI GACGC 1 cut(s) 563
HhaI GCGC 1 cut(s) 675
Hin1II CATG 5 cut(s) 197, 355, 450, 793, 853
Hin6I GCGC 1 cut(s) 673
HinP1I GCGC 1 cut(s) 673
HincII GTYRAC 1 cut(s) 568
HindII GTYRAC 1 cut(s) 568
HinfI GANTC 3 cut(s) 74, 784, 871
HpaII CCGG 1 cut(s) 51
HphI GGTGA 1 cut(s) 1109
Hpy166II GTNNAC 3 cut(s) 382, 433, 568
Hpy188I TCNGA 5 cut(s) 270, 306, 534, 644, 1029
Hpy188III TCNNGA 5 cut(s) 352, 470, 863, 1022, 1059
Hpy8I GTNNAC 3 cut(s) 382, 433, 568
Hpy99I CGWCG 2 cut(s) 95, 104
HpyAV CCTTC 4 cut(s) 182, 311, 805, 1045
HpyCH4III ACNGT 4 cut(s) 279, 572, 818, 942
HpyCH4IV ACGT 3 cut(s) 391, 774, 1091
HpyCH4V TGCA 4 cut(s) 175, 433, 489, 878
HpyF10VI GCNNNNNNNGC 2 cut(s) 66, 119
HpyF3I CTNAG 1 cut(s) 30
HpySE526I ACGT 3 cut(s) 391, 774, 1091
Hsp92II CATG 5 cut(s) 197, 355, 450, 793, 853
HspAI GCGC 1 cut(s) 673
KpnI GGTACC 1 cut(s) 1010
Ksp22I TGATCA 3 cut(s) 310, 354, 529
Kzo9I GATC 8 cut(s) 4, 241, 310, 354, 474, 529, 627, 1024
LguI GCTCTTC 1 cut(s) 228
LmnI GCTCC 3 cut(s) 23, 31, 670
Lsp1109I GCAGC 2 cut(s) 22, 501
LweI GCATC 1 cut(s) 871
MaeI CTAG 2 cut(s) 857, 1022
MaeII ACGT 3 cut(s) 391, 774, 1091
MaeIII GTNAC 3 cut(s) 295, 613, 1127
MalI GATC 8 cut(s) 6, 243, 312, 356, 476, 531, 629, 1026
MboI GATC 8 cut(s) 4, 241, 310, 354, 474, 529, 627, 1024
MboII GAAGA 8 cut(s) 109, 215, 556, 637, 775, 845, 880, 982
MflI RGATCY 1 cut(s) 627
MhlI GDGCHC 3 cut(s) 28, 223, 435
MlsI TGGCCA 1 cut(s) 1070
MluCI AATT 4 cut(s) 462, 496, 597, 687
MluNI TGGCCA 1 cut(s) 1070
MlyI GAGTC 1 cut(s) 880
Mox20I TGGCCA 1 cut(s) 1070
MroXI GAANNNNTTC 1 cut(s) 288
MscI TGGCCA 1 cut(s) 1070
MseI TTAA 2 cut(s) 686, 954
MslI CAYNNNNRTG 1 cut(s) 198
Msp20I TGGCCA 1 cut(s) 1070
MspCI CTTAAG 1 cut(s) 953
MspI CCGG 1 cut(s) 51
MspR9I CCNGG 5 cut(s) 51, 246, 563, 588, 823
Mva1269I GAATGC 1 cut(s) 772
MvaI CCWGG 4 cut(s) 246, 563, 588, 823
MwoI GCNNNNNNNGC 2 cut(s) 66, 119
NciI CCSGG 1 cut(s) 51
NdeII GATC 8 cut(s) 4, 241, 310, 354, 474, 529, 627, 1024
NlaIII CATG 5 cut(s) 197, 355, 450, 793, 853
NlaIV GGNNCC 1 cut(s) 1008
NmeAIII GCCGAG 1 cut(s) 784
NmuCI GTSAC 2 cut(s) 295, 613
PagI TCATGA 1 cut(s) 351
PciSI GCTCTTC 1 cut(s) 228
PcsI WCGNNNNNNNCGW 1 cut(s) 96
PctI GAATGC 1 cut(s) 772
PdmI GAANNNNTTC 1 cut(s) 288
PfeI GAWTC 2 cut(s) 74, 784
PfoI TCCNGGA 1 cut(s) 821
PkrI GCNGC 6 cut(s) 12, 62, 65, 68, 335, 491
PleI GAGTC 1 cut(s) 879
PpsI GAGTC 1 cut(s) 879
Ppu21I YACGTR 1 cut(s) 392
Psp124BI GAGCTC 1 cut(s) 28
Psp6I CCWGG 4 cut(s) 244, 561, 586, 821
PspEI GGTNACC 1 cut(s) 1127
PspFI CCCAGC 1 cut(s) 1036
PspGI CCWGG 4 cut(s) 244, 561, 586, 821
PspN4I GGNNCC 1 cut(s) 1008
PstI CTGCAG 1 cut(s) 491
PstNI CAGNNNCTG 1 cut(s) 884
PsuI RGATCY 1 cut(s) 627
RsaI GTAC 2 cut(s) 574, 1008
RsaNI GTAC 2 cut(s) 573, 1007
RseI CAYNNNNRTG 1 cut(s) 198
SacI GAGCTC 1 cut(s) 28
SapI GCTCTTC 1 cut(s) 228
SaqAI TTAA 2 cut(s) 686, 954
SatI GCNGC 6 cut(s) 11, 61, 64, 67, 334, 490
Sau3AI GATC 8 cut(s) 4, 241, 310, 354, 474, 529, 627, 1024
SchI GAGTC 1 cut(s) 880
ScrFI CCNGG 5 cut(s) 51, 246, 563, 588, 823
SduI GDGCHC 3 cut(s) 28, 223, 435
SfaNI GCATC 1 cut(s) 871
SfcI CTRYAG 2 cut(s) 487, 693
SmiMI CAYNNNNRTG 1 cut(s) 198
SmlI CTYRAG 3 cut(s) 257, 947, 953
SmoI CTYRAG 3 cut(s) 257, 947, 953
SnaBI TACGTA 1 cut(s) 392
Sse9I AATT 4 cut(s) 462, 496, 597, 687
SsiI CCGC 8 cut(s) 44, 60, 63, 66, 69, 81, 333, 1109
SspMI CTAG 2 cut(s) 857, 1022
SstI GAGCTC 1 cut(s) 28
StyD4I CCNGG 5 cut(s) 49, 244, 561, 586, 821
StyI CCWWGG 1 cut(s) 678
TaaI ACNGT 4 cut(s) 279, 572, 818, 942
TaiI ACGT 3 cut(s) 394, 777, 1094
TaqI TCGA 3 cut(s) 494, 840, 963
TasI AATT 4 cut(s) 462, 496, 597, 687
TauI GCSGC 4 cut(s) 63, 66, 69, 336
TfiI GAWTC 2 cut(s) 74, 784
Tru1I TTAA 2 cut(s) 686, 954
Tru9I TTAA 2 cut(s) 686, 954
TscAI CASTG 1 cut(s) 757
TseFI GTSAC 2 cut(s) 295, 613
TseI GCWGC 2 cut(s) 10, 489
Tsp45I GTSAC 2 cut(s) 295, 613
TspDTI ATGAA 4 cut(s) 242, 297, 455, 563
TspGWI ACGGA 1 cut(s) 661
TspRI CASTG 1 cut(s) 757
Vha464I CTTAAG 1 cut(s) 953
VneI GTGCAC 1 cut(s) 431
XapI RAATTY 2 cut(s) 462, 496
XbaI TCTAGA 1 cut(s) 1021
XcmI CCANNNNNNNNNTGG 3 cut(s) 121, 739, 1091
XmnI GAANNNNTTC 1 cut(s) 288
XspI CTAG 2 cut(s) 857, 1022
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.