RLG00000006363

prohibitin homologues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0007435
Physical Location & Seq
Forward (+)
6511644 .. 6514551
2908 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006363

Sequence Viewer

Length: 1083 bp
ATGGACTCACAGCAGCAGAGACAAACAGCTCCACAGCCTCGCCCTCGGCCTCAGAATCAAGACGGCGGCGGCGGCGATTTCTCGGCCGTTTGCTTCGTTCTCTTCCTGTTCCTTGCCGTCGCCATTTTCACTTTGGTAATCAGCGGTCTACACCAAGTTCCGGAAGGTCATGTTGGGGTGTATTGGAGAGGAGGTGCTCTTCTGAAGACTGTTACAGATCCAGGGTTTCATCTCAAGCTTCCCCTGATAACCAACTTTGAGCCTGTTCAAGTGACCCTTCAGACTGATCAGGTGAAGGATATTCCATGTGGTACAAAGGGGGGTGTCGTGATTAACTTTGAGAAGATAGAGGTTGTTAACCGGCTTCGCAAGGAATTTGTATATGAGACACTTCTCAATTATGGTGTGAAGTATGACCATACATGGATATATGACAAAATTCATCATGAGATCAATCAGTTCTGCAGCTCACATTCACTTCAAGATGTCTACATTGATGTGTTCGATCAGATTGATGAAAAGATGAAAGAAGCTCTTCAGGGTGATTGCACACGTTATGCTCCAGGTATTGAAATTTTCAGTGTCCGTGTCACAAAGCCGACTATCCCAGATAGTGTAAGACATAACTTTGAGCAGATGGAGGAGCAACGTACCAAGGTCCTAATTGCTATTGAGAGACAGAGAGTGGTGGAGAAAGAGGCAGAAACCAAGAAGAAGATAGCTATAAGTGAAGCCGAGAAGAATGCCAATGTGAGTAAGATTCTCATGGAGCAAAAGTTAATGGAGAAGGACAGTTCCAGGAGGCAGCAAGAAATTGAAAATGACATGTATCTTGCTCGGGAAAAGAGTGTAGCAGATGCTGATTTCTACAAGGTCATGAAAGAGGCTGAAGCAAACAGACTGAAGCTTACTCCGCAGTTCCTTGAGCTCAAATTCATCGAGGCTATTGCTGACAATACGAAAGTTTTCTTTGGGGACAAGGTACCAAATATGGTTTTGGATCAGAGGTTGCTGGGGAACTTCTTAAAGGTTTCCAGAGAGTTGTCGGGAGATGTGGCCAGGGAAGGAAATGCAGCATATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7

Protein Analysis

361

Amino Acids

41.13

Weight (kDa)

5.98

Isoelectric Point (pI)

36.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 52 - 230 1.4e-28 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 982
AccB1I GGYRCC 1 cut(s) 982
AccI GTMKAC 2 cut(s) 148, 489
AccIII TCCGGA 1 cut(s) 160
AciI CCGC 5 cut(s) 66, 69, 72, 144, 914
AclWI GGATC 2 cut(s) 212, 1008
AcoI YGGCCR 2 cut(s) 84, 1056
AcsI RAATTY 4 cut(s) 374, 438, 573, 932
AcuI CTGAAG 5 cut(s) 224, 263, 521, 909, 923
AfaI GTAC 3 cut(s) 313, 652, 984
AfiI CCNNNNNNNGG 1 cut(s) 160
AflIII ACRYGT 2 cut(s) 551, 825
AgsI TTSAA 4 cut(s) 269, 482, 572, 818
AjnI CCWGG 4 cut(s) 220, 562, 797, 1058
AjuI GAANNNNNNNTTGG 2 cut(s) 156, 188
AluBI AGCT 7 cut(s) 29, 238, 468, 533, 722, 907, 928
AluI AGCT 7 cut(s) 29, 238, 468, 533, 722, 907, 928
Alw21I GWGCWC 2 cut(s) 199, 930
Alw26I GTCTC 3 cut(s) 13, 380, 670
AlwI GGATC 2 cut(s) 212, 1008
AlwNI CAGNNNCTG 1 cut(s) 860
Ama87I CYCGRG 1 cut(s) 837
Aor13HI TCCGGA 1 cut(s) 160
AoxI GGCC 3 cut(s) 47, 84, 1056
ApeKI GCWGC 4 cut(s) 13, 465, 805, 1073
ApoI RAATTY 4 cut(s) 374, 438, 573, 932
Asp700I GAANNNNTTC 2 cut(s) 534, 965
Asp718I GGTACC 1 cut(s) 982
AspS9I GGNCC 1 cut(s) 658
AsuHPI GGTGA 2 cut(s) 304, 554
AvaI CYCGRG 1 cut(s) 837
AvaII GGWCC 1 cut(s) 658
BalI TGGCCA 1 cut(s) 1058
BanI GGYRCC 1 cut(s) 982
BanII GRGCYC 1 cut(s) 930
BbsI GAAGAC 1 cut(s) 212
Bbv12I GWGCWC 2 cut(s) 199, 930
BbvI GCAGC 3 cut(s) 25, 477, 817
BccI CCATC 1 cut(s) 631
BceAI ACGGC 3 cut(s) 71, 79, 101
BcgI CGANNNNNNTGC 4 cut(s) 725, 759, 929, 963
BciT130I CCWGG 4 cut(s) 222, 564, 799, 1060
BclI TGATCA 1 cut(s) 286
BcoDI GTCTC 3 cut(s) 13, 380, 670
BfmI CTRYAG 1 cut(s) 463
BisI GCNGC 7 cut(s) 14, 67, 70, 73, 466, 806, 1074
BlsI GCNGC 7 cut(s) 15, 68, 71, 74, 467, 807, 1075
Bme1390I CCNGG 4 cut(s) 222, 564, 799, 1060
Bme18I GGWCC 1 cut(s) 658
BmeT110I CYCGRG 1 cut(s) 837
BmgT120I GGNCC 1 cut(s) 658
BmiI GGNNCC 1 cut(s) 984
BmrFI CCNGG 4 cut(s) 222, 564, 799, 1060
BmsI GCATC 1 cut(s) 847
BpiI GAAGAC 1 cut(s) 212
BpmI CTGGAG 1 cut(s) 546
BpuEI CTTGAG 2 cut(s) 218, 944
BsaJI CCNNGG 4 cut(s) 44, 221, 654, 1059
BsaWI WCCGGW 1 cut(s) 160
BsaXI ACNNNNNCTCC 4 cut(s) 178, 208, 761, 791
Bsc4I CCNNNNNNNGG 1 cut(s) 160
Bse118I RCCGGY 1 cut(s) 360
BseAI TCCGGA 1 cut(s) 160
BseBI CCWGG 4 cut(s) 222, 564, 799, 1060
BseDI CCNNGG 4 cut(s) 44, 221, 654, 1059
BseLI CCNNNNNNNGG 1 cut(s) 160
BseMII CTCAG 1 cut(s) 65
BseRI GAGGAG 2 cut(s) 204, 656
BseX3I CGGCCG 1 cut(s) 84
BseXI GCAGC 3 cut(s) 25, 477, 817
BseYI CCCAGC 1 cut(s) 1012
Bsh1285I CGRYCG 1 cut(s) 87
BshFI GGCC 3 cut(s) 49, 86, 1058
BshNI GGYRCC 1 cut(s) 982
BsiEI CGRYCG 1 cut(s) 87
BsiHKAI GWGCWC 2 cut(s) 199, 930
BsiHKCI CYCGRG 1 cut(s) 837
BsiSI CCGG 2 cut(s) 161, 361
BslFI GGGAC 1 cut(s) 989
BslI CCNNNNNNNGG 1 cut(s) 160
BsmAI GTCTC 3 cut(s) 13, 380, 670
BsmFI GGGAC 1 cut(s) 989
BsmI GAATGC 1 cut(s) 748
BsnI GGCC 3 cut(s) 49, 86, 1058
BsoBI CYCGRG 1 cut(s) 837
Bsp1286I GDGCHC 2 cut(s) 199, 930
Bsp13I TCCGGA 1 cut(s) 160
Bsp143I GATC 5 cut(s) 217, 286, 450, 505, 1000
BspACI CCGC 5 cut(s) 66, 69, 72, 144, 914
BspANI GGCC 3 cut(s) 49, 86, 1058
BspCNI CTCAG 1 cut(s) 64
BspEI TCCGGA 1 cut(s) 160
BspHI TCATGA 2 cut(s) 445, 876
BspLI GGNNCC 1 cut(s) 984
BspMAI CTGCAG 1 cut(s) 467
BspPI GGATC 2 cut(s) 212, 1008
BspQI GCTCTTC 2 cut(s) 204, 540
BspT107I GGYRCC 1 cut(s) 982
BsrFI RCCGGY 1 cut(s) 360
BssAI RCCGGY 1 cut(s) 360
BssECI CCNNGG 4 cut(s) 44, 221, 654, 1059
BssMI GATC 5 cut(s) 217, 286, 450, 505, 1000
BssT1I CCWWGG 1 cut(s) 654
Bst2UI CCWGG 4 cut(s) 222, 564, 799, 1060
Bst4CI ACNGT 2 cut(s) 211, 794
Bst6I CTCTTC 3 cut(s) 107, 204, 540
BstDEI CTNAG 1 cut(s) 51
BstKTI GATC 5 cut(s) 220, 289, 453, 508, 1003
BstMAI GTCTC 3 cut(s) 13, 380, 670
BstMBI GATC 5 cut(s) 217, 286, 450, 505, 1000
BstMCI CGRYCG 1 cut(s) 87
BstMWI GCNNNNNNNGC 2 cut(s) 72, 913
BstNI CCWGG 4 cut(s) 222, 564, 799, 1060
BstNSI RCATGY 1 cut(s) 829
BstSCI CCNGG 4 cut(s) 220, 562, 797, 1058
BstSFI CTRYAG 1 cut(s) 463
BstV1I GCAGC 3 cut(s) 25, 477, 817
BstV2I GAAGAC 1 cut(s) 212
BstX2I RGATCY 1 cut(s) 217
BstYI RGATCY 1 cut(s) 217
BstZI CGGCCG 1 cut(s) 84
BsuRI GGCC 3 cut(s) 49, 86, 1058
BtsIMutI CAGTG 1 cut(s) 586
CaiI CAGNNNCTG 1 cut(s) 860
CciI TCATGA 2 cut(s) 445, 876
Cfr10I RCCGGY 1 cut(s) 360
Cfr13I GGNCC 1 cut(s) 658
Csp6I GTAC 3 cut(s) 312, 651, 983
CviAII CATG 7 cut(s) 170, 306, 423, 446, 766, 826, 877
CviQI GTAC 3 cut(s) 312, 651, 983
DdeI CTNAG 1 cut(s) 51
DpnI GATC 5 cut(s) 219, 288, 452, 507, 1002
DpnII GATC 5 cut(s) 217, 286, 450, 505, 1000
EaeI YGGCCR 2 cut(s) 84, 1056
EagI CGGCCG 1 cut(s) 84
Eam1104I CTCTTC 3 cut(s) 107, 204, 540
EarI CTCTTC 3 cut(s) 107, 204, 540
Ecl136II GAGCTC 1 cut(s) 928
EclXI CGGCCG 1 cut(s) 84
Eco130I CCWWGG 1 cut(s) 654
Eco24I GRGCYC 1 cut(s) 930
Eco47I GGWCC 1 cut(s) 658
Eco52I CGGCCG 1 cut(s) 84
Eco53kI GAGCTC 1 cut(s) 928
Eco57I CTGAAG 5 cut(s) 224, 263, 521, 909, 923
Eco88I CYCGRG 1 cut(s) 837
EcoICRI GAGCTC 1 cut(s) 928
EcoO109I RGGNCCY 1 cut(s) 658
EcoRII CCWGG 4 cut(s) 220, 562, 797, 1058
EcoT14I CCWWGG 1 cut(s) 654
EcoT38I GRGCYC 1 cut(s) 930
ErhI CCWWGG 1 cut(s) 654
FaeI CATG 7 cut(s) 173, 309, 426, 449, 769, 829, 880
FalI AAGNNNNNCTT 4 cut(s) 261, 293, 519, 551
FaqI GGGAC 1 cut(s) 989
FatI CATG 7 cut(s) 169, 305, 422, 445, 765, 825, 876
FbaI TGATCA 1 cut(s) 286
FblI GTMKAC 2 cut(s) 148, 489
Fnu4HI GCNGC 7 cut(s) 14, 67, 70, 73, 466, 806, 1074
FriOI GRGCYC 1 cut(s) 930
Fsp4HI GCNGC 7 cut(s) 14, 67, 70, 73, 466, 806, 1074
GluI GCNGC 7 cut(s) 14, 67, 70, 73, 466, 806, 1074
GsaI CCCAGC 1 cut(s) 1016
GsuI CTGGAG 1 cut(s) 546
HaeIII GGCC 3 cut(s) 49, 86, 1058
HapII CCGG 2 cut(s) 161, 361
Hin1II CATG 7 cut(s) 173, 309, 426, 449, 769, 829, 880
HincII GTYRAC 1 cut(s) 358
HindII GTYRAC 1 cut(s) 358
HindIII AAGCTT 2 cut(s) 236, 905
HinfI GANTC 3 cut(s) 5, 55, 760
HpaI GTTAAC 1 cut(s) 358
HpaII CCGG 2 cut(s) 161, 361
HphI GGTGA 2 cut(s) 304, 554
Hpy166II GTNNAC 3 cut(s) 149, 358, 490
Hpy188I TCNGA 5 cut(s) 54, 204, 282, 510, 1005
Hpy188III TCNNGA 9 cut(s) 59, 161, 328, 446, 482, 839, 877, 1035, 1047
Hpy8I GTNNAC 3 cut(s) 149, 358, 490
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 5 cut(s) 158, 287, 289, 781, 1058
HpyCH4III ACNGT 2 cut(s) 211, 794
HpyCH4IV ACGT 2 cut(s) 553, 649
HpyCH4V TGCA 3 cut(s) 465, 549, 1073
HpyF10VI GCNNNNNNNGC 2 cut(s) 72, 913
HpyF3I CTNAG 1 cut(s) 51
HpySE526I ACGT 2 cut(s) 553, 649
Hsp92II CATG 7 cut(s) 173, 309, 426, 449, 769, 829, 880
Kpn2I TCCGGA 1 cut(s) 160
KpnI GGTACC 1 cut(s) 986
Ksp22I TGATCA 1 cut(s) 286
KspAI GTTAAC 1 cut(s) 358
Kzo9I GATC 5 cut(s) 217, 286, 450, 505, 1000
LguI GCTCTTC 2 cut(s) 204, 540
LmnI GCTCC 4 cut(s) 34, 565, 643, 769
Lsp1109I GCAGC 3 cut(s) 25, 477, 817
LweI GCATC 1 cut(s) 847
MaeII ACGT 2 cut(s) 553, 649
MaeIII GTNAC 3 cut(s) 211, 271, 589
MalI GATC 5 cut(s) 219, 288, 452, 507, 1002
MboI GATC 5 cut(s) 217, 286, 450, 505, 1000
MboII GAAGA 8 cut(s) 94, 191, 217, 355, 527, 724, 727, 751
MflI RGATCY 1 cut(s) 217
MhlI GDGCHC 2 cut(s) 199, 930
MlsI TGGCCA 1 cut(s) 1058
MluCI AATT 7 cut(s) 374, 397, 438, 573, 663, 813, 932
MluNI TGGCCA 1 cut(s) 1058
Mox20I TGGCCA 1 cut(s) 1058
MroI TCCGGA 1 cut(s) 160
MroXI GAANNNNTTC 2 cut(s) 534, 965
MscI TGGCCA 1 cut(s) 1058
MseI TTAA 4 cut(s) 333, 357, 779, 1025
MslI CAYNNNNRTG 1 cut(s) 497
Msp20I TGGCCA 1 cut(s) 1058
MspA1I CMGCKG 1 cut(s) 144
MspI CCGG 2 cut(s) 161, 361
MspR9I CCNGG 4 cut(s) 222, 564, 799, 1060
Mva1269I GAATGC 1 cut(s) 748
MvaI CCWGG 4 cut(s) 222, 564, 799, 1060
MwoI GCNNNNNNNGC 2 cut(s) 72, 913
NdeII GATC 5 cut(s) 217, 286, 450, 505, 1000
NlaIII CATG 7 cut(s) 173, 309, 426, 449, 769, 829, 880
NlaIV GGNNCC 1 cut(s) 984
NmeAIII GCCGAG 3 cut(s) 25, 62, 760
NmuCI GTSAC 2 cut(s) 271, 589
NspI RCATGY 1 cut(s) 829
PagI TCATGA 2 cut(s) 445, 876
PciI ACATGT 1 cut(s) 825
PciSI GCTCTTC 2 cut(s) 204, 540
PctI GAATGC 1 cut(s) 748
PdmI GAANNNNTTC 2 cut(s) 534, 965
PfeI GAWTC 2 cut(s) 55, 760
PfoI TCCNGGA 1 cut(s) 797
PkrI GCNGC 7 cut(s) 15, 68, 71, 74, 467, 807, 1075
PpuMI RGGWCCY 1 cut(s) 658
PscI ACATGT 1 cut(s) 825
Psp124BI GAGCTC 1 cut(s) 930
Psp5II RGGWCCY 1 cut(s) 658
Psp6I CCWGG 4 cut(s) 220, 562, 797, 1058
PspFI CCCAGC 1 cut(s) 1012
PspGI CCWGG 4 cut(s) 220, 562, 797, 1058
PspN4I GGNNCC 1 cut(s) 984
PspPI GGNCC 1 cut(s) 658
PspPPI RGGWCCY 1 cut(s) 658
PstI CTGCAG 1 cut(s) 467
PstNI CAGNNNCTG 1 cut(s) 860
PsuI RGATCY 1 cut(s) 217
RsaI GTAC 3 cut(s) 313, 652, 984
RsaNI GTAC 3 cut(s) 312, 651, 983
RseI CAYNNNNRTG 1 cut(s) 497
SacI GAGCTC 1 cut(s) 930
SapI GCTCTTC 2 cut(s) 204, 540
SaqAI TTAA 4 cut(s) 333, 357, 779, 1025
SatI GCNGC 7 cut(s) 14, 67, 70, 73, 466, 806, 1074
Sau3AI GATC 5 cut(s) 217, 286, 450, 505, 1000
Sau96I GGNCC 1 cut(s) 658
ScrFI CCNGG 4 cut(s) 222, 564, 799, 1060
SduI GDGCHC 2 cut(s) 199, 930
SfaNI GCATC 1 cut(s) 847
SfcI CTRYAG 1 cut(s) 463
SinI GGWCC 1 cut(s) 658
SmiMI CAYNNNNRTG 1 cut(s) 497
SmlI CTYRAG 2 cut(s) 233, 923
SmoI CTYRAG 2 cut(s) 233, 923
Sse9I AATT 7 cut(s) 374, 397, 438, 573, 663, 813, 932
SsiI CCGC 5 cut(s) 66, 69, 72, 144, 914
SstI GAGCTC 1 cut(s) 930
StyD4I CCNGG 4 cut(s) 220, 562, 797, 1058
StyI CCWWGG 1 cut(s) 654
TaaI ACNGT 2 cut(s) 211, 794
TaiI ACGT 2 cut(s) 556, 652
TaqI TCGA 2 cut(s) 504, 939
TasI AATT 7 cut(s) 374, 397, 438, 573, 663, 813, 932
TauI GCSGC 3 cut(s) 69, 72, 75
TfiI GAWTC 2 cut(s) 55, 760
Tru1I TTAA 4 cut(s) 333, 357, 779, 1025
Tru9I TTAA 4 cut(s) 333, 357, 779, 1025
TscAI CASTG 1 cut(s) 586
TseFI GTSAC 2 cut(s) 271, 589
TseI GCWGC 4 cut(s) 13, 465, 805, 1073
Tsp45I GTSAC 2 cut(s) 271, 589
TspDTI ATGAA 6 cut(s) 218, 431, 531, 539, 893, 925
TspGWI ACGGA 1 cut(s) 575
TspRI CASTG 1 cut(s) 586
VpaK11BI GGWCC 1 cut(s) 658
XapI RAATTY 4 cut(s) 374, 438, 573, 932
XceI RCATGY 1 cut(s) 829
XcmI CCANNNNNNNNNTGG 1 cut(s) 130
XmiI GTMKAC 2 cut(s) 148, 489
XmnI GAANNNNTTC 2 cut(s) 534, 965
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.