Rw0G016490

prohibitin homologues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00751
OG0007435
Physical Location & Seq
Reverse (-)
340780 .. 343960
3181 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G016490.1

Sequence Viewer

Length: 1155 bp
ATGGATCAGCAGCAGAGAGCAGGAGCTCCTCAGCATCGTCCTCCTCCGCCTCCCGGTCAAGGCGGCGGCGGCGGAGAATCCTCCGCCATTCTTGTCGTCCTCGTCGGTTTCCTCGCCATCTTCGCTATGGTGGTGCTTCCATCAATATCAACTATTAGCAATAGCTTTTCCATCCTGCACCAAGTCCCTGAAGGTCATGTTGGTGTATATTGGAGAGGGGGTGCTCTTCTAAAGACTATTACTGATCCAGGGTTTCATCTCAAGTTGCCTCTGATAACACAGTATGAACCTGTTCAAGTGACCCTTCAGACTGATCAAGTGAGGGATATTCCTTGCGGTACAAAAGGGGGTGTCATGATCACCTTTGAAAAGATTGAGGTTGTAAACAGGCTACGTAAGGAATATGTGTATGAGACACTTCTAAATTATGGTGTGCACTATGACAACACATGGATATATGACAAAATTCATCACGAGATCAATCAGTTCTGCAGCTCGAATTCTCTCCAAGATGTCTATATTGATGTGTTTGATCAGATTGATGAGAAGATGAAAGACGCTCTCCAGGTTGACTGTACCAAATATGCCCCAGGTATCGAAATTATCAATGTGCGTGTCACAAAGCCGAAGATCCCTGATAGTATCAGACGGAACTTTGAGCAGATGGAGGAGGAGCGCACCAAGGTCTTAATTGCTATAGAGAGACAGAGGGTGGTGGAGAAAGAAGCAGAAACCAAGAAAAAGATGGCTATCAGTGAAGCCGAGAAGAATGCCAACGTCAGTAAGATTCTCATGGAACAAAAGCTGATGGAGAAGGACAGTTCCAGGAGGCAGGAAGAAATCGAAAATGCCATGTATCTTGCTCGGGAGAAGAGTCTTGCAGATGCTGATTTCTACAAAGTAATGAGAGAGGCCGAAGCAAACAAGTTGAAGCTCACTCCACAGTTCCTTGAGCTTAAGTTTATCGAGGCCATCGCTGATAATACAAAAATCTTCTTTGGGGACAAGGTACCCAATATGGTTCTAGATCAGAGGTTGCTGGGGAACTTTTTGAAGGTTTCCAGAGAGGTGGCCAAAGATATATCCCACAAAACGTCTGGGGATGCTAATGCGGATGATGGAGAAGCTGGTAACCCTGAAGTTGAATATGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7

Protein Analysis

384

Amino Acids

43.37

Weight (kDa)

5.55

Isoelectric Point (pI)

42.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 61 - 242 1.5e-28 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1009
AccB1I GGYRCC 1 cut(s) 1009
AciI CCGC 8 cut(s) 47, 63, 66, 69, 72, 84, 336, 1112
AclWI GGATC 3 cut(s) 12, 239, 625
AcoI YGGCCR 1 cut(s) 1071
AcsI RAATTY 2 cut(s) 465, 499
AcuI CTGAAG 2 cut(s) 210, 290
AfaI GTAC 3 cut(s) 340, 577, 1011
AfiI CCNNNNNNNGG 2 cut(s) 53, 59
AflII CTTAAG 1 cut(s) 956
AgsI TTSAA 5 cut(s) 296, 368, 931, 1054, 1145
AjnI CCWGG 4 cut(s) 247, 564, 589, 824
AjuI GAANNNNNNNTTGG 2 cut(s) 183, 215
AluBI AGCT 7 cut(s) 26, 165, 495, 805, 934, 955, 1127
AluI AGCT 7 cut(s) 26, 165, 495, 805, 934, 955, 1127
Alw21I GWGCWC 3 cut(s) 28, 226, 438
Alw26I GTCTC 2 cut(s) 407, 697
Alw44I GTGCAC 1 cut(s) 434
AlwI GGATC 3 cut(s) 12, 239, 625
AlwNI CAGNNNCTG 1 cut(s) 887
Ama87I CYCGRG 1 cut(s) 864
AoxI GGCC 3 cut(s) 912, 969, 1071
ApaLI GTGCAC 1 cut(s) 434
ApeKI GCWGC 2 cut(s) 10, 492
ApoI RAATTY 2 cut(s) 465, 499
Asp700I GAANNNNTTC 1 cut(s) 291
Asp718I GGTACC 1 cut(s) 1009
AspLEI GCGC 1 cut(s) 678
AsuC2I CCSGG 1 cut(s) 54
AsuHPI GGTGA 1 cut(s) 352
AvaI CYCGRG 1 cut(s) 864
BaeGI GKGCMC 1 cut(s) 438
BalI TGGCCA 1 cut(s) 1073
BanI GGYRCC 1 cut(s) 1009
BanII GRGCYC 1 cut(s) 28
BauI CACGAG 1 cut(s) 473
Bbv12I GWGCWC 3 cut(s) 28, 226, 438
BbvCI CCTCAGC 1 cut(s) 30
BbvI GCAGC 2 cut(s) 22, 504
BccI CCATC 8 cut(s) 125, 148, 179, 658, 739, 802, 980, 1112
BcgI CGANNNNNNTGC 2 cut(s) 752, 786
BciT130I CCWGG 4 cut(s) 249, 566, 591, 826
BclI TGATCA 3 cut(s) 313, 357, 532
BcnI CCSGG 1 cut(s) 54
BcoDI GTCTC 2 cut(s) 407, 697
BfaI CTAG 1 cut(s) 1025
BfmI CTRYAG 2 cut(s) 490, 696
BfrI CTTAAG 1 cut(s) 956
BisI GCNGC 5 cut(s) 11, 64, 67, 70, 493
BlsI GCNGC 5 cut(s) 12, 65, 68, 71, 494
Bme1390I CCNGG 5 cut(s) 54, 249, 566, 591, 826
BmeT110I CYCGRG 1 cut(s) 864
BmiI GGNNCC 1 cut(s) 1011
BmrFI CCNGG 5 cut(s) 54, 249, 566, 591, 826
BmsI GCATC 3 cut(s) 43, 874, 1093
BpmI CTGGAG 1 cut(s) 548
Bpu10I CCTNAGC 1 cut(s) 30
BpuEI CTTGAG 2 cut(s) 245, 971
BpuMI CCSGG 1 cut(s) 54
BsaAI YACGTR 1 cut(s) 395
BsaBI GATNNNNATC 1 cut(s) 749
BsaJI CCNNGG 3 cut(s) 248, 589, 681
BsaXI ACNNNNNCTCC 2 cut(s) 205, 235
Bsc4I CCNNNNNNNGG 2 cut(s) 53, 59
Bse8I GATNNNNATC 1 cut(s) 749
BseBI CCWGG 4 cut(s) 249, 566, 591, 826
BseDI CCNNGG 3 cut(s) 248, 589, 681
BseGI GGATG 3 cut(s) 171, 1108, 1120
BseJI GATNNNNATC 1 cut(s) 749
BseLI CCNNNNNNNGG 2 cut(s) 53, 59
BseMII CTCAG 1 cut(s) 44
BseRI GAGGAG 4 cut(s) 18, 33, 683, 686
BseSI GKGCMC 1 cut(s) 438
BseXI GCAGC 2 cut(s) 22, 504
BseYI CCCAGC 1 cut(s) 1039
BsgI GTGCAG 1 cut(s) 161
BshFI GGCC 3 cut(s) 914, 971, 1073
BshNI GGYRCC 1 cut(s) 1009
BsiHKAI GWGCWC 3 cut(s) 28, 226, 438
BsiHKCI CYCGRG 1 cut(s) 864
BsiSI CCGG 1 cut(s) 54
BslFI GGGAC 2 cut(s) 170, 1016
BslI CCNNNNNNNGG 2 cut(s) 53, 59
BsmAI GTCTC 2 cut(s) 407, 697
BsmFI GGGAC 2 cut(s) 170, 1016
BsmI GAATGC 1 cut(s) 775
BsnI GGCC 3 cut(s) 914, 971, 1073
BsoBI CYCGRG 1 cut(s) 864
Bsp1286I GDGCHC 3 cut(s) 28, 226, 438
Bsp143I GATC 8 cut(s) 4, 244, 313, 357, 477, 532, 630, 1027
BspACI CCGC 8 cut(s) 47, 63, 66, 69, 72, 84, 336, 1112
BspANI GGCC 3 cut(s) 914, 971, 1073
BspCNI CTCAG 1 cut(s) 43
BspHI TCATGA 1 cut(s) 354
BspLI GGNNCC 1 cut(s) 1011
BspMAI CTGCAG 1 cut(s) 494
BspPI GGATC 3 cut(s) 12, 239, 625
BspQI GCTCTTC 1 cut(s) 231
BspT107I GGYRCC 1 cut(s) 1009
BspTI CTTAAG 1 cut(s) 956
BssECI CCNNGG 3 cut(s) 248, 589, 681
BssMI GATC 8 cut(s) 4, 244, 313, 357, 477, 532, 630, 1027
BssSI CACGAG 1 cut(s) 473
BssT1I CCWWGG 1 cut(s) 681
Bst2BI CACGAG 1 cut(s) 473
Bst2UI CCWGG 4 cut(s) 249, 566, 591, 826
Bst4CI ACNGT 4 cut(s) 282, 575, 821, 945
Bst6I CTCTTC 2 cut(s) 231, 866
BstAFI CTTAAG 1 cut(s) 956
BstBAI YACGTR 1 cut(s) 395
BstDEI CTNAG 1 cut(s) 30
BstEII GGTNACC 1 cut(s) 1130
BstF5I GGATG 3 cut(s) 171, 1108, 1120
BstHHI GCGC 1 cut(s) 678
BstKTI GATC 8 cut(s) 7, 247, 316, 360, 480, 535, 633, 1030
BstMAI GTCTC 2 cut(s) 407, 697
BstMBI GATC 8 cut(s) 4, 244, 313, 357, 477, 532, 630, 1027
BstMWI GCNNNNNNNGC 2 cut(s) 69, 122
BstNI CCWGG 4 cut(s) 249, 566, 591, 826
BstPI GGTNACC 1 cut(s) 1130
BstSCI CCNGG 5 cut(s) 52, 247, 564, 589, 824
BstSFI CTRYAG 2 cut(s) 490, 696
BstSLI GKGCMC 1 cut(s) 438
BstSNI TACGTA 1 cut(s) 395
BstV1I GCAGC 2 cut(s) 22, 504
BstX2I RGATCY 1 cut(s) 630
BstXI CCANNNNNNTGG 1 cut(s) 1069
BstYI RGATCY 1 cut(s) 630
BsuRI GGCC 3 cut(s) 914, 971, 1073
BtgZI GCGATG 1 cut(s) 958
BtsCI GGATG 3 cut(s) 171, 1108, 1120
BtsIMutI CAGTG 1 cut(s) 760
CaiI CAGNNNCTG 1 cut(s) 887
CciI TCATGA 1 cut(s) 354
CfoI GCGC 1 cut(s) 678
CseI GACGC 1 cut(s) 566
Csp6I GTAC 3 cut(s) 339, 576, 1010
CviAII CATG 5 cut(s) 197, 355, 450, 793, 853
CviQI GTAC 3 cut(s) 339, 576, 1010
DdeI CTNAG 1 cut(s) 30
DpnI GATC 8 cut(s) 6, 246, 315, 359, 479, 534, 632, 1029
DpnII GATC 8 cut(s) 4, 244, 313, 357, 477, 532, 630, 1027
EaeI YGGCCR 1 cut(s) 1071
Eam1104I CTCTTC 2 cut(s) 231, 866
EarI CTCTTC 2 cut(s) 231, 866
EciI GGCGGA 3 cut(s) 36, 73, 87
Ecl136II GAGCTC 1 cut(s) 26
Eco105I TACGTA 1 cut(s) 395
Eco130I CCWWGG 1 cut(s) 681
Eco24I GRGCYC 1 cut(s) 28
Eco53kI GAGCTC 1 cut(s) 26
Eco57I CTGAAG 2 cut(s) 210, 290
Eco88I CYCGRG 1 cut(s) 864
Eco91I GGTNACC 1 cut(s) 1130
EcoICRI GAGCTC 1 cut(s) 26
EcoO65I GGTNACC 1 cut(s) 1130
EcoRI GAATTC 1 cut(s) 499
EcoRII CCWGG 4 cut(s) 247, 564, 589, 824
EcoT14I CCWWGG 1 cut(s) 681
EcoT38I GRGCYC 1 cut(s) 28
ErhI CCWWGG 1 cut(s) 681
FaeI CATG 5 cut(s) 200, 358, 453, 796, 856
FalI AAGNNNNNCTT 2 cut(s) 288, 320
FaqI GGGAC 2 cut(s) 170, 1016
FatI CATG 5 cut(s) 196, 354, 449, 792, 852
FbaI TGATCA 3 cut(s) 313, 357, 532
Fnu4HI GCNGC 5 cut(s) 11, 64, 67, 70, 493
FokI GGATG 3 cut(s) 158, 1115, 1127
FriOI GRGCYC 1 cut(s) 28
Fsp4HI GCNGC 5 cut(s) 11, 64, 67, 70, 493
FspBI CTAG 1 cut(s) 1025
GlaI GCGC 1 cut(s) 677
GluI GCNGC 5 cut(s) 11, 64, 67, 70, 493
GsaI CCCAGC 1 cut(s) 1043
GsuI CTGGAG 1 cut(s) 548
HaeIII GGCC 3 cut(s) 914, 971, 1073
HapII CCGG 1 cut(s) 54
HgaI GACGC 1 cut(s) 566
HhaI GCGC 1 cut(s) 678
Hin1II CATG 5 cut(s) 200, 358, 453, 796, 856
Hin6I GCGC 1 cut(s) 676
HinP1I GCGC 1 cut(s) 676
HincII GTYRAC 1 cut(s) 571
HindII GTYRAC 1 cut(s) 571
HinfI GANTC 3 cut(s) 77, 787, 874
HpaII CCGG 1 cut(s) 54
HphI GGTGA 1 cut(s) 352
Hpy166II GTNNAC 3 cut(s) 385, 436, 571
Hpy188I TCNGA 5 cut(s) 273, 309, 537, 647, 1032
Hpy188III TCNNGA 5 cut(s) 355, 473, 866, 1025, 1062
Hpy8I GTNNAC 3 cut(s) 385, 436, 571
Hpy99I CGWCG 1 cut(s) 107
HpyAV CCTTC 4 cut(s) 185, 314, 808, 1048
HpyCH4III ACNGT 4 cut(s) 282, 575, 821, 945
HpyCH4IV ACGT 3 cut(s) 394, 777, 1094
HpyCH4V TGCA 4 cut(s) 178, 436, 492, 881
HpyF10VI GCNNNNNNNGC 2 cut(s) 69, 122
HpyF3I CTNAG 1 cut(s) 30
HpySE526I ACGT 3 cut(s) 394, 777, 1094
Hsp92II CATG 5 cut(s) 200, 358, 453, 796, 856
HspAI GCGC 1 cut(s) 676
KpnI GGTACC 1 cut(s) 1013
Ksp22I TGATCA 3 cut(s) 313, 357, 532
Kzo9I GATC 8 cut(s) 4, 244, 313, 357, 477, 532, 630, 1027
LguI GCTCTTC 1 cut(s) 231
LmnI GCTCC 3 cut(s) 23, 31, 673
Lsp1109I GCAGC 2 cut(s) 22, 504
LweI GCATC 3 cut(s) 43, 874, 1093
MaeI CTAG 1 cut(s) 1025
MaeII ACGT 3 cut(s) 394, 777, 1094
MaeIII GTNAC 3 cut(s) 298, 616, 1130
MalI GATC 8 cut(s) 6, 246, 315, 359, 479, 534, 632, 1029
MboI GATC 8 cut(s) 4, 244, 313, 357, 477, 532, 630, 1027
MboII GAAGA 8 cut(s) 112, 218, 559, 640, 778, 848, 883, 985
MflI RGATCY 1 cut(s) 630
MhlI GDGCHC 3 cut(s) 28, 226, 438
MlsI TGGCCA 1 cut(s) 1073
MluCI AATT 5 cut(s) 424, 465, 499, 600, 690
MluNI TGGCCA 1 cut(s) 1073
MlyI GAGTC 1 cut(s) 883
Mox20I TGGCCA 1 cut(s) 1073
MroXI GAANNNNTTC 1 cut(s) 291
MscI TGGCCA 1 cut(s) 1073
MseI TTAA 2 cut(s) 689, 957
MslI CAYNNNNRTG 1 cut(s) 201
Msp20I TGGCCA 1 cut(s) 1073
MspCI CTTAAG 1 cut(s) 956
MspI CCGG 1 cut(s) 54
MspR9I CCNGG 5 cut(s) 54, 249, 566, 591, 826
Mva1269I GAATGC 1 cut(s) 775
MvaI CCWGG 4 cut(s) 249, 566, 591, 826
MwoI GCNNNNNNNGC 2 cut(s) 69, 122
NciI CCSGG 1 cut(s) 54
NdeII GATC 8 cut(s) 4, 244, 313, 357, 477, 532, 630, 1027
NlaIII CATG 5 cut(s) 200, 358, 453, 796, 856
NlaIV GGNNCC 1 cut(s) 1011
NmeAIII GCCGAG 1 cut(s) 787
NmuCI GTSAC 2 cut(s) 298, 616
PagI TCATGA 1 cut(s) 354
PciSI GCTCTTC 1 cut(s) 231
PctI GAATGC 1 cut(s) 775
PdmI GAANNNNTTC 1 cut(s) 291
PfeI GAWTC 2 cut(s) 77, 787
PfoI TCCNGGA 1 cut(s) 824
PkrI GCNGC 5 cut(s) 12, 65, 68, 71, 494
PleI GAGTC 1 cut(s) 882
PpsI GAGTC 1 cut(s) 882
Ppu21I YACGTR 1 cut(s) 395
Psp124BI GAGCTC 1 cut(s) 28
Psp6I CCWGG 4 cut(s) 247, 564, 589, 824
PspEI GGTNACC 1 cut(s) 1130
PspFI CCCAGC 1 cut(s) 1039
PspGI CCWGG 4 cut(s) 247, 564, 589, 824
PspN4I GGNNCC 1 cut(s) 1011
PstI CTGCAG 1 cut(s) 494
PstNI CAGNNNCTG 1 cut(s) 887
PsuI RGATCY 1 cut(s) 630
RsaI GTAC 3 cut(s) 340, 577, 1011
RsaNI GTAC 3 cut(s) 339, 576, 1010
RseI CAYNNNNRTG 1 cut(s) 201
SacI GAGCTC 1 cut(s) 28
SapI GCTCTTC 1 cut(s) 231
SaqAI TTAA 2 cut(s) 689, 957
SatI GCNGC 5 cut(s) 11, 64, 67, 70, 493
Sau3AI GATC 8 cut(s) 4, 244, 313, 357, 477, 532, 630, 1027
SchI GAGTC 1 cut(s) 883
ScrFI CCNGG 5 cut(s) 54, 249, 566, 591, 826
SduI GDGCHC 3 cut(s) 28, 226, 438
SfaNI GCATC 3 cut(s) 43, 874, 1093
SfcI CTRYAG 2 cut(s) 490, 696
SmiMI CAYNNNNRTG 1 cut(s) 201
SmlI CTYRAG 3 cut(s) 260, 950, 956
SmoI CTYRAG 3 cut(s) 260, 950, 956
SnaBI TACGTA 1 cut(s) 395
Sse9I AATT 5 cut(s) 424, 465, 499, 600, 690
SsiI CCGC 8 cut(s) 47, 63, 66, 69, 72, 84, 336, 1112
SspMI CTAG 1 cut(s) 1025
SstI GAGCTC 1 cut(s) 28
StyD4I CCNGG 5 cut(s) 52, 247, 564, 589, 824
StyI CCWWGG 1 cut(s) 681
TaaI ACNGT 4 cut(s) 282, 575, 821, 945
TaiI ACGT 3 cut(s) 397, 780, 1097
TaqI TCGA 4 cut(s) 497, 597, 843, 966
TasI AATT 5 cut(s) 424, 465, 499, 600, 690
TauI GCSGC 3 cut(s) 66, 69, 72
TfiI GAWTC 2 cut(s) 77, 787
Tru1I TTAA 2 cut(s) 689, 957
Tru9I TTAA 2 cut(s) 689, 957
TscAI CASTG 1 cut(s) 760
TseFI GTSAC 2 cut(s) 298, 616
TseI GCWGC 2 cut(s) 10, 492
Tsp45I GTSAC 2 cut(s) 298, 616
TspDTI ATGAA 4 cut(s) 245, 300, 458, 566
TspGWI ACGGA 1 cut(s) 664
TspRI CASTG 1 cut(s) 760
Vha464I CTTAAG 1 cut(s) 956
VneI GTGCAC 1 cut(s) 434
XapI RAATTY 2 cut(s) 465, 499
XbaI TCTAGA 1 cut(s) 1024
XcmI CCANNNNNNNNNTGG 3 cut(s) 124, 742, 1094
XmnI GAANNNNTTC 1 cut(s) 291
XspI CTAG 1 cut(s) 1025
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.