RLG00000006365

prohibitin homologues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0007435
Physical Location & Seq
Forward (+)
6518814 .. 6521936
3123 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006365

Sequence Viewer

Length: 1146 bp
ATGTATCAGCCGCAGAGAGCAGAAGCTCCTGGTCCTCCGCCTCCCGGTCAAGGCGGTGGTGGCGGAGAATCCTCCGCCATTCTTGTCGTCCTCGTCGGTTTCCTCGCCATCTTCGCTATGGTGGTGCTTCCATCAATATCAACTATTAGCAATAGCTTTTCCATCCTGCACCAAGTCCCCGAAGGTCATGTTGGTGTATATTGGAGAGGGGGTGCTCTTCTAAAGACTATTACTGATCCAGGGTTTCATCTCAAGTTGCCTCTCATAACACAGTATGAACCTGTTCAAGTGACCCTTCAGACTGATCAAGTGAGGGATATTCCTTGTGGTACAAAAGGGGGTGTCATGATCAACTTTGAAAAGATTGAGGTTGTAAACAGGCTACGTAAGGAATATGTGTATGAGACACTTCTAAATTATGGTGTGCACTATGACAACACATGGATATATGACAAAATTCATCACGAGATCAATCAGTTCTGCAGCTCGAATTCTCTCCAAGATGTCTATATTGATGTGTTTGATCAGATTGATGAGAAGATGAAAGACGCTCTCCAGGTTGACTGTACCAAATATGCCCCAGGTATCGAAATTATCAACGTGCGTGTCACAAAGCCGAAGATCCCTGATAGTATCAGACGGAACTTTGAGCAGATGGAGGAGGAGCGCACCAAGGTCTTAATTGCTATAGAGAGACAGAGGGTGGTGGAGAAAGAAGCAGAAACCAAGAAGAAGATGGCTATCAGTGAAGCTGAGAAGAATGCCAACGTCAGTAAGATTCTCATGGAACAAAAGCTGATGGAGAAGGACAGTTCCAGGAGGCAGGAAGAAATCGAAAATGCCATGTATCTAGCTCGGGAGAAGAGTCTTGCAGATGCTGATTTCTACAAAGTAATGAGAGAGGCCGAAGCAAACAAGTTGAAGCTCACTCCACAGTTCCTTGAGCTTAAGTTTATCGAGGCCATTGCTGATAATACAAAAATCTTCTTTGGGGACAAGGTACCCAATATGGTTCTAGATCAGAGGTTGCTGGGGAACTTTTTGAAGGTTTCCAGAGAGGTGGCCAAAGATATATCCCAACAAATGTCTGGGGAAGCTAAGGCGGACGATGGAGAAGCTGGTAACCCTGAAGTTGAATATGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Band_7

Protein Analysis

382

Amino Acids

43.06

Weight (kDa)

5.34

Isoelectric Point (pI)

42.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Band_7 PF01145 58 - 239 1.3e-28 SPFH domain / Band 7 family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1000
AccB1I GGYRCC 1 cut(s) 1000
AciI CCGC 6 cut(s) 11, 38, 54, 63, 75, 1103
AclWI GGATC 2 cut(s) 230, 616
AcoI YGGCCR 1 cut(s) 1062
AcsI RAATTY 2 cut(s) 456, 490
AcuI CTGAAG 1 cut(s) 281
AfaI GTAC 3 cut(s) 331, 568, 1002
AfiI CCNNNNNNNGG 2 cut(s) 44, 50
AflII CTTAAG 1 cut(s) 947
AgsI TTSAA 5 cut(s) 287, 359, 922, 1045, 1136
AjnI CCWGG 5 cut(s) 28, 238, 555, 580, 815
AjuI GAANNNNNNNTTGG 2 cut(s) 174, 206
Alw21I GWGCWC 2 cut(s) 217, 429
Alw26I GTCTC 2 cut(s) 398, 688
Alw44I GTGCAC 1 cut(s) 425
AlwI GGATC 2 cut(s) 230, 616
AlwNI CAGNNNCTG 1 cut(s) 878
Ama87I CYCGRG 1 cut(s) 855
AoxI GGCC 3 cut(s) 903, 960, 1062
ApaLI GTGCAC 1 cut(s) 425
ApeKI GCWGC 1 cut(s) 483
ApoI RAATTY 2 cut(s) 456, 490
Asp700I GAANNNNTTC 1 cut(s) 282
Asp718I GGTACC 1 cut(s) 1000
AspLEI GCGC 1 cut(s) 669
AspS9I GGNCC 1 cut(s) 32
AsuC2I CCSGG 1 cut(s) 45
AvaI CYCGRG 1 cut(s) 855
AvaII GGWCC 1 cut(s) 32
BaeGI GKGCMC 1 cut(s) 429
BalI TGGCCA 1 cut(s) 1064
BanI GGYRCC 1 cut(s) 1000
BauI CACGAG 1 cut(s) 464
Bbv12I GWGCWC 2 cut(s) 217, 429
BbvI GCAGC 1 cut(s) 495
BccI CCATC 7 cut(s) 116, 139, 170, 649, 730, 793, 1103
BcgI CGANNNNNNTGC 2 cut(s) 947, 981
BciT130I CCWGG 5 cut(s) 30, 240, 557, 582, 817
BclI TGATCA 3 cut(s) 304, 348, 523
BcnI CCSGG 1 cut(s) 45
BcoDI GTCTC 2 cut(s) 398, 688
BfaI CTAG 2 cut(s) 851, 1016
BfmI CTRYAG 2 cut(s) 481, 687
BfrI CTTAAG 1 cut(s) 947
BisI GCNGC 2 cut(s) 11, 484
BlsI GCNGC 2 cut(s) 12, 485
Bme1390I CCNGG 6 cut(s) 30, 45, 240, 557, 582, 817
Bme18I GGWCC 1 cut(s) 32
BmeT110I CYCGRG 1 cut(s) 855
BmgT120I GGNCC 1 cut(s) 32
BmiI GGNNCC 1 cut(s) 1002
BmrFI CCNGG 6 cut(s) 30, 45, 240, 557, 582, 817
BmsI GCATC 1 cut(s) 865
BpmI CTGGAG 1 cut(s) 539
Bpu10I CCTNAGC 1 cut(s) 1098
BpuEI CTTGAG 2 cut(s) 236, 962
BpuMI CCSGG 1 cut(s) 45
BsaAI YACGTR 1 cut(s) 386
BsaBI GATNNNNATC 1 cut(s) 740
BsaJI CCNNGG 3 cut(s) 239, 580, 672
BsaXI ACNNNNNCTCC 2 cut(s) 196, 226
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 50
Bse3DI GCAATG 1 cut(s) 963
Bse8I GATNNNNATC 1 cut(s) 740
BseBI CCWGG 5 cut(s) 30, 240, 557, 582, 817
BseDI CCNNGG 3 cut(s) 239, 580, 672
BseGI GGATG 1 cut(s) 162
BseJI GATNNNNATC 1 cut(s) 740
BseLI CCNNNNNNNGG 2 cut(s) 44, 50
BseMI GCAATG 1 cut(s) 963
BseMII CTCAG 1 cut(s) 744
BseRI GAGGAG 2 cut(s) 674, 677
BseSI GKGCMC 1 cut(s) 429
BseXI GCAGC 1 cut(s) 495
BseYI CCCAGC 1 cut(s) 1030
BsgI GTGCAG 1 cut(s) 152
BshFI GGCC 3 cut(s) 905, 962, 1064
BshNI GGYRCC 1 cut(s) 1000
BsiHKAI GWGCWC 2 cut(s) 217, 429
BsiHKCI CYCGRG 1 cut(s) 855
BsiSI CCGG 1 cut(s) 45
BslFI GGGAC 2 cut(s) 161, 1007
BslI CCNNNNNNNGG 2 cut(s) 44, 50
BsmAI GTCTC 2 cut(s) 398, 688
BsmFI GGGAC 2 cut(s) 161, 1007
BsmI GAATGC 1 cut(s) 766
BsnI GGCC 3 cut(s) 905, 962, 1064
BsoBI CYCGRG 1 cut(s) 855
Bsp1286I GDGCHC 2 cut(s) 217, 429
Bsp143I GATC 7 cut(s) 235, 304, 348, 468, 523, 621, 1018
BspACI CCGC 6 cut(s) 11, 38, 54, 63, 75, 1103
BspANI GGCC 3 cut(s) 905, 962, 1064
BspCNI CTCAG 1 cut(s) 745
BspHI TCATGA 1 cut(s) 345
BspLI GGNNCC 1 cut(s) 1002
BspMAI CTGCAG 1 cut(s) 485
BspPI GGATC 2 cut(s) 230, 616
BspQI GCTCTTC 1 cut(s) 222
BspT107I GGYRCC 1 cut(s) 1000
BspTI CTTAAG 1 cut(s) 947
BsrDI GCAATG 1 cut(s) 963
BssECI CCNNGG 3 cut(s) 239, 580, 672
BssMI GATC 7 cut(s) 235, 304, 348, 468, 523, 621, 1018
BssSI CACGAG 1 cut(s) 464
BssT1I CCWWGG 1 cut(s) 672
Bst2BI CACGAG 1 cut(s) 464
Bst2UI CCWGG 5 cut(s) 30, 240, 557, 582, 817
Bst4CI ACNGT 4 cut(s) 273, 566, 812, 936
Bst6I CTCTTC 2 cut(s) 222, 857
BstAFI CTTAAG 1 cut(s) 947
BstBAI YACGTR 1 cut(s) 386
BstDEI CTNAG 2 cut(s) 753, 1098
BstEII GGTNACC 1 cut(s) 1121
BstF5I GGATG 1 cut(s) 162
BstHHI GCGC 1 cut(s) 669
BstKTI GATC 7 cut(s) 238, 307, 351, 471, 526, 624, 1021
BstMAI GTCTC 2 cut(s) 398, 688
BstMBI GATC 7 cut(s) 235, 304, 348, 468, 523, 621, 1018
BstMWI GCNNNNNNNGC 2 cut(s) 60, 113
BstNI CCWGG 5 cut(s) 30, 240, 557, 582, 817
BstPI GGTNACC 1 cut(s) 1121
BstSCI CCNGG 6 cut(s) 28, 43, 238, 555, 580, 815
BstSFI CTRYAG 2 cut(s) 481, 687
BstSLI GKGCMC 1 cut(s) 429
BstSNI TACGTA 1 cut(s) 386
BstV1I GCAGC 1 cut(s) 495
BstX2I RGATCY 1 cut(s) 621
BstXI CCANNNNNNTGG 1 cut(s) 1060
BstYI RGATCY 1 cut(s) 621
BsuRI GGCC 3 cut(s) 905, 962, 1064
BtsCI GGATG 1 cut(s) 162
BtsIMutI CAGTG 1 cut(s) 751
CaiI CAGNNNCTG 1 cut(s) 878
CciI TCATGA 1 cut(s) 345
CfoI GCGC 1 cut(s) 669
Cfr13I GGNCC 1 cut(s) 32
CseI GACGC 1 cut(s) 557
Csp6I GTAC 3 cut(s) 330, 567, 1001
CviAII CATG 5 cut(s) 188, 346, 441, 784, 844
CviQI GTAC 3 cut(s) 330, 567, 1001
DdeI CTNAG 2 cut(s) 753, 1098
DpnI GATC 7 cut(s) 237, 306, 350, 470, 525, 623, 1020
DpnII GATC 7 cut(s) 235, 304, 348, 468, 523, 621, 1018
EaeI YGGCCR 1 cut(s) 1062
Eam1104I CTCTTC 2 cut(s) 222, 857
EarI CTCTTC 2 cut(s) 222, 857
EciI GGCGGA 4 cut(s) 27, 64, 78, 1118
Eco105I TACGTA 1 cut(s) 386
Eco130I CCWWGG 1 cut(s) 672
Eco47I GGWCC 1 cut(s) 32
Eco57I CTGAAG 1 cut(s) 281
Eco88I CYCGRG 1 cut(s) 855
Eco91I GGTNACC 1 cut(s) 1121
EcoO65I GGTNACC 1 cut(s) 1121
EcoRI GAATTC 1 cut(s) 490
EcoRII CCWGG 5 cut(s) 28, 238, 555, 580, 815
EcoT14I CCWWGG 1 cut(s) 672
ErhI CCWWGG 1 cut(s) 672
FaeI CATG 5 cut(s) 191, 349, 444, 787, 847
FalI AAGNNNNNCTT 2 cut(s) 279, 311
FaqI GGGAC 2 cut(s) 161, 1007
FatI CATG 5 cut(s) 187, 345, 440, 783, 843
FbaI TGATCA 3 cut(s) 304, 348, 523
Fnu4HI GCNGC 2 cut(s) 11, 484
FokI GGATG 1 cut(s) 149
Fsp4HI GCNGC 2 cut(s) 11, 484
FspBI CTAG 2 cut(s) 851, 1016
GlaI GCGC 1 cut(s) 668
GluI GCNGC 2 cut(s) 11, 484
GsaI CCCAGC 1 cut(s) 1034
GsuI CTGGAG 1 cut(s) 539
HaeIII GGCC 3 cut(s) 905, 962, 1064
HapII CCGG 1 cut(s) 45
HgaI GACGC 1 cut(s) 557
HhaI GCGC 1 cut(s) 669
Hin1II CATG 5 cut(s) 191, 349, 444, 787, 847
Hin6I GCGC 1 cut(s) 667
HinP1I GCGC 1 cut(s) 667
HincII GTYRAC 1 cut(s) 562
HindII GTYRAC 1 cut(s) 562
HinfI GANTC 3 cut(s) 68, 778, 865
HpaII CCGG 1 cut(s) 45
Hpy166II GTNNAC 3 cut(s) 376, 427, 562
Hpy188I TCNGA 4 cut(s) 300, 528, 638, 1023
Hpy188III TCNNGA 5 cut(s) 346, 464, 857, 1016, 1053
Hpy8I GTNNAC 3 cut(s) 376, 427, 562
Hpy99I CGWCG 1 cut(s) 98
HpyAV CCTTC 4 cut(s) 176, 305, 799, 1039
HpyCH4III ACNGT 4 cut(s) 273, 566, 812, 936
HpyCH4IV ACGT 3 cut(s) 385, 600, 768
HpyCH4V TGCA 4 cut(s) 169, 427, 483, 872
HpyF10VI GCNNNNNNNGC 2 cut(s) 60, 113
HpyF3I CTNAG 2 cut(s) 753, 1098
HpySE526I ACGT 3 cut(s) 385, 600, 768
Hsp92II CATG 5 cut(s) 191, 349, 444, 787, 847
HspAI GCGC 1 cut(s) 667
KpnI GGTACC 1 cut(s) 1004
Ksp22I TGATCA 3 cut(s) 304, 348, 523
Kzo9I GATC 7 cut(s) 235, 304, 348, 468, 523, 621, 1018
LguI GCTCTTC 1 cut(s) 222
LmnI GCTCC 2 cut(s) 31, 664
Lsp1109I GCAGC 1 cut(s) 495
LweI GCATC 1 cut(s) 865
MaeI CTAG 2 cut(s) 851, 1016
MaeII ACGT 3 cut(s) 385, 600, 768
MaeIII GTNAC 3 cut(s) 289, 607, 1121
MalI GATC 7 cut(s) 237, 306, 350, 470, 525, 623, 1020
MboI GATC 7 cut(s) 235, 304, 348, 468, 523, 621, 1018
MflI RGATCY 1 cut(s) 621
MhlI GDGCHC 2 cut(s) 217, 429
MlsI TGGCCA 1 cut(s) 1064
MluCI AATT 5 cut(s) 415, 456, 490, 591, 681
MluNI TGGCCA 1 cut(s) 1064
MlyI GAGTC 1 cut(s) 874
Mox20I TGGCCA 1 cut(s) 1064
MroXI GAANNNNTTC 1 cut(s) 282
MscI TGGCCA 1 cut(s) 1064
MseI TTAA 2 cut(s) 680, 948
MslI CAYNNNNRTG 1 cut(s) 192
Msp20I TGGCCA 1 cut(s) 1064
MspCI CTTAAG 1 cut(s) 947
MspI CCGG 1 cut(s) 45
MspR9I CCNGG 6 cut(s) 30, 45, 240, 557, 582, 817
Mva1269I GAATGC 1 cut(s) 766
MvaI CCWGG 5 cut(s) 30, 240, 557, 582, 817
MwoI GCNNNNNNNGC 2 cut(s) 60, 113
NciI CCSGG 1 cut(s) 45
NdeII GATC 7 cut(s) 235, 304, 348, 468, 523, 621, 1018
NlaIII CATG 5 cut(s) 191, 349, 444, 787, 847
NlaIV GGNNCC 1 cut(s) 1002
NmuCI GTSAC 2 cut(s) 289, 607
PagI TCATGA 1 cut(s) 345
PciSI GCTCTTC 1 cut(s) 222
PctI GAATGC 1 cut(s) 766
PdmI GAANNNNTTC 1 cut(s) 282
PfeI GAWTC 2 cut(s) 68, 778
PfoI TCCNGGA 1 cut(s) 815
PkrI GCNGC 2 cut(s) 12, 485
PleI GAGTC 1 cut(s) 873
PpsI GAGTC 1 cut(s) 873
Ppu21I YACGTR 1 cut(s) 386
Psp6I CCWGG 5 cut(s) 28, 238, 555, 580, 815
PspEI GGTNACC 1 cut(s) 1121
PspFI CCCAGC 1 cut(s) 1030
PspGI CCWGG 5 cut(s) 28, 238, 555, 580, 815
PspN4I GGNNCC 1 cut(s) 1002
PspPI GGNCC 1 cut(s) 32
PstI CTGCAG 1 cut(s) 485
PstNI CAGNNNCTG 1 cut(s) 878
PsuI RGATCY 1 cut(s) 621
RsaI GTAC 3 cut(s) 331, 568, 1002
RsaNI GTAC 3 cut(s) 330, 567, 1001
RseI CAYNNNNRTG 1 cut(s) 192
SapI GCTCTTC 1 cut(s) 222
SaqAI TTAA 2 cut(s) 680, 948
SatI GCNGC 2 cut(s) 11, 484
Sau3AI GATC 7 cut(s) 235, 304, 348, 468, 523, 621, 1018
Sau96I GGNCC 1 cut(s) 32
SchI GAGTC 1 cut(s) 874
ScrFI CCNGG 6 cut(s) 30, 45, 240, 557, 582, 817
SduI GDGCHC 2 cut(s) 217, 429
SfaNI GCATC 1 cut(s) 865
SfcI CTRYAG 2 cut(s) 481, 687
SinI GGWCC 1 cut(s) 32
SmiMI CAYNNNNRTG 1 cut(s) 192
SmlI CTYRAG 3 cut(s) 251, 941, 947
SmoI CTYRAG 3 cut(s) 251, 941, 947
SnaBI TACGTA 1 cut(s) 386
Sse9I AATT 5 cut(s) 415, 456, 490, 591, 681
SsiI CCGC 6 cut(s) 11, 38, 54, 63, 75, 1103
SspMI CTAG 2 cut(s) 851, 1016
StyD4I CCNGG 6 cut(s) 28, 43, 238, 555, 580, 815
StyI CCWWGG 1 cut(s) 672
TaaI ACNGT 4 cut(s) 273, 566, 812, 936
TaiI ACGT 3 cut(s) 388, 603, 771
TaqI TCGA 4 cut(s) 488, 588, 834, 957
TasI AATT 5 cut(s) 415, 456, 490, 591, 681
TauI GCSGC 1 cut(s) 13
TfiI GAWTC 2 cut(s) 68, 778
Tru1I TTAA 2 cut(s) 680, 948
Tru9I TTAA 2 cut(s) 680, 948
TscAI CASTG 1 cut(s) 751
TseFI GTSAC 2 cut(s) 289, 607
TseI GCWGC 1 cut(s) 483
Tsp45I GTSAC 2 cut(s) 289, 607
TspDTI ATGAA 4 cut(s) 236, 291, 449, 557
TspGWI ACGGA 1 cut(s) 655
TspRI CASTG 1 cut(s) 751
Vha464I CTTAAG 1 cut(s) 947
VneI GTGCAC 1 cut(s) 425
VpaK11BI GGWCC 1 cut(s) 32
XapI RAATTY 2 cut(s) 456, 490
XbaI TCTAGA 1 cut(s) 1015
XcmI CCANNNNNNNNNTGG 3 cut(s) 115, 733, 1085
XmnI GAANNNNTTC 1 cut(s) 282
XspI CTAG 2 cut(s) 851, 1016
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.